Wall clock time and date at job start Tue Mar 31 2020 12:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38395 * 120.85507 * 2 1 4 4 C 1.38310 * 119.30176 * 179.97438 * 3 2 1 5 5 N 1.31957 * 121.08493 * 0.02562 * 4 3 2 6 6 C 1.31666 * 121.87667 * 359.67793 * 5 4 3 7 7 C 1.39565 * 120.56663 * 0.59010 * 6 5 4 8 8 C 1.47832 * 120.56168 * 179.72813 * 7 6 5 9 9 O 1.21556 * 119.99959 * 126.81992 * 8 7 6 10 10 N 1.34771 * 120.00054 * 306.82859 * 8 7 6 11 11 C 1.44961 * 117.33850 * 4.67206 * 10 8 7 12 12 C 1.51961 * 111.94071 * 203.73257 * 11 10 8 13 13 O 1.41323 * 111.61094 * 319.70071 * 12 11 10 14 14 C 1.40856 * 118.30317 * 56.89281 * 13 12 11 15 15 H 1.09011 * 109.53608 * 187.74414 * 14 13 12 16 16 C 1.53925 * 110.46219 * 68.19515 * 14 13 12 17 17 N 1.46768 * 107.61688 * 221.66879 * 16 14 13 18 18 C 1.36935 * 125.36219 * 178.66129 * 17 16 14 19 19 H 1.07999 * 120.00326 * 172.48717 * 18 17 16 20 20 C 1.38817 * 120.00163 * 352.47926 * 18 17 16 21 21 N 1.31619 * 120.00488 * 212.89332 * 20 18 17 22 22 Si 1.86800 * 119.99384 * 32.89279 * 20 18 17 23 23 H 1.48503 * 109.47172 * 174.00340 * 22 20 18 24 24 H 1.48501 * 109.47368 * 294.00416 * 22 20 18 25 25 H 1.48503 * 109.47231 * 54.00280 * 22 20 18 26 26 C 1.46869 * 109.27792 * 358.39993 * 17 16 14 27 27 C 1.44547 * 117.34100 * 184.65994 * 10 8 7 28 28 H 1.09008 * 109.64053 * 285.98796 * 27 10 8 29 29 H 1.09005 * 109.46968 * 274.67910 * 1 2 3 30 30 H 1.08998 * 109.47490 * 34.67964 * 1 2 3 31 31 H 1.09000 * 109.47251 * 154.68327 * 1 2 3 32 32 H 1.07994 * 120.34842 * 359.96039 * 3 2 1 33 33 H 1.08005 * 119.45616 * 179.97438 * 4 3 2 34 34 H 1.08005 * 119.71741 * 180.31709 * 6 5 4 35 35 H 1.08997 * 108.98796 * 324.36935 * 11 10 8 36 36 H 1.08996 * 108.98555 * 83.18961 * 11 10 8 37 37 H 1.09007 * 109.05413 * 80.24700 * 12 11 10 38 38 H 1.08999 * 109.05344 * 199.21897 * 12 11 10 39 39 H 1.08997 * 109.95319 * 102.08012 * 16 14 13 40 40 H 1.09000 * 109.70015 * 341.12284 * 16 14 13 41 41 H 0.96999 * 119.99615 * 354.98827 * 21 20 18 42 42 H 1.09008 * 110.07136 * 137.29059 * 26 17 16 43 43 H 1.09001 * 110.07057 * 258.81544 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5993 1.1506 0.0005 5 7 4.2498 0.0025 0.0005 6 6 3.6197 -1.1536 0.0063 7 6 2.2249 -1.2018 0.0003 8 6 1.5175 -2.4999 0.0008 9 8 0.6691 -2.7294 0.8404 10 7 1.8136 -3.4289 -0.9296 11 6 2.9050 -3.1373 -1.8379 12 6 2.7848 -3.9145 -3.1381 13 8 2.3495 -5.2402 -2.9138 14 6 1.1313 -5.4372 -2.2348 15 1 1.0016 -6.4979 -2.0189 16 6 -0.0502 -4.9652 -3.1012 17 7 -0.9879 -4.2541 -2.2243 18 6 -2.1543 -3.6602 -2.6267 19 1 -2.8405 -3.2650 -1.8923 20 6 -2.4548 -3.5661 -3.9787 21 7 -3.1313 -2.5322 -4.4322 22 14 -1.8988 -4.9070 -5.1544 23 1 -2.4640 -4.6484 -6.5031 24 1 -0.4158 -4.9137 -5.2321 25 1 -2.3746 -6.2250 -4.6628 26 6 -0.4814 -4.2850 -0.8460 27 6 1.0170 -4.6351 -0.9403 28 1 1.2989 -5.2679 -0.0987 29 1 -0.3633 0.0838 1.0243 30 1 -0.3634 0.8451 -0.5847 31 1 -0.3634 -0.9290 -0.4394 32 1 1.6965 2.1345 -0.0006 33 1 4.1558 2.0763 0.0001 34 1 4.1871 -2.0726 0.0113 35 1 2.9052 -2.0704 -2.0611 36 1 3.8470 -3.3987 -1.3558 37 1 2.0701 -3.4108 -3.7891 38 1 3.7575 -3.9388 -3.6295 39 1 -0.5460 -5.8239 -3.5537 40 1 0.3106 -4.2928 -3.8795 41 1 -3.4827 -1.8733 -3.8131 42 1 -0.6086 -3.3085 -0.3787 43 1 -1.0080 -5.0467 -0.2710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083033612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:22 Heat of formation + Delta-G solvation = 22.684075 kcal Electronic energy + Delta-G solvation = -28380.619734 eV Core-core repulsion = 24621.143326 eV Total energy + Delta-G solvation = -3759.476408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40106 -40.07148 -38.42239 -36.24572 -35.14081 -33.96375 -32.70380 -31.55229 -30.44350 -28.46519 -28.20549 -27.59775 -24.84588 -23.98127 -23.67958 -22.34988 -21.02774 -20.41337 -19.01488 -17.84073 -17.41793 -17.21878 -16.59753 -16.48351 -15.97262 -15.88656 -15.08485 -14.83314 -14.51084 -14.37864 -14.16171 -13.94004 -13.54749 -13.24122 -12.99898 -12.88660 -12.78331 -12.64802 -12.38953 -12.11731 -11.80345 -11.77172 -11.41468 -11.29889 -11.01252 -10.66926 -10.31925 -10.01325 -9.86491 -9.64905 -9.60766 -9.42715 -9.15032 -9.04011 -8.43240 -8.32428 -7.07427 -6.42325 -3.15482 0.64922 1.03673 2.59538 2.89716 3.38732 3.49921 3.58257 3.66858 3.80758 4.11581 4.33081 4.54656 4.56936 4.58195 4.64476 4.83913 4.88742 4.89644 5.01786 5.14197 5.17307 5.24625 5.40360 5.42095 5.44128 5.51918 5.58831 5.65696 5.67678 5.73173 5.77552 5.92087 6.06118 6.19070 6.26914 6.43498 6.43762 6.59884 6.63725 6.92242 7.25127 7.46681 7.68233 7.72905 8.14225 8.31281 9.01521 9.58697 10.23880 11.08906 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.005432 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.828510 B = 5153.408407 C = 5879.887972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.014 3.986 3 C -0.179 4.179 4 C 0.114 3.886 5 N -0.492 5.492 6 C 0.131 3.869 7 C -0.180 4.180 8 C 0.563 3.437 9 O -0.513 6.513 10 N -0.580 5.580 11 C 0.076 3.924 12 C 0.056 3.944 13 O -0.367 6.367 14 C 0.086 3.914 15 H 0.120 0.880 16 C 0.087 3.913 17 N -0.604 5.604 18 C -0.338 4.338 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.907 5.907 22 Si 1.045 2.955 23 H -0.298 1.298 24 H -0.277 1.277 25 H -0.296 1.296 26 C 0.121 3.879 27 C 0.111 3.889 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.109 0.891 39 H 0.034 0.966 40 H 0.053 0.947 41 H 0.263 0.737 42 H 0.080 0.920 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.413 3.434 7.205 17.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.005 3.995 3 C -0.198 4.198 4 C -0.042 4.042 5 N -0.200 5.200 6 C -0.027 4.027 7 C -0.185 4.185 8 C 0.350 3.650 9 O -0.390 6.390 10 N -0.313 5.313 11 C -0.048 4.048 12 C -0.022 4.022 13 O -0.284 6.284 14 C 0.027 3.973 15 H 0.138 0.862 16 C -0.038 4.038 17 N -0.333 5.333 18 C -0.465 4.465 19 H 0.096 0.904 20 C -0.216 4.216 21 N -0.547 5.547 22 Si 0.877 3.123 23 H -0.226 1.226 24 H -0.204 1.204 25 H -0.224 1.224 26 C -0.006 4.006 27 C 0.007 3.993 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.159 0.841 33 H 0.177 0.823 34 H 0.177 0.823 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 15.916 2.740 5.926 17.203 hybrid contribution -1.213 0.548 1.648 2.118 sum 14.702 3.288 7.574 16.862 Atomic orbital electron populations 1.20956 0.89058 1.04630 1.03410 1.20443 0.97426 0.91308 0.90276 1.22034 0.95547 0.98654 1.03599 1.22902 0.91715 0.96368 0.93197 1.67703 1.40656 0.98220 1.13468 1.23001 0.90096 0.96677 0.92968 1.20891 0.95574 0.94361 1.07685 1.18098 0.82312 0.83117 0.81517 1.90757 1.31748 1.79209 1.37248 1.46553 1.33585 1.18695 1.32435 1.21814 0.89513 1.01251 0.92193 1.22317 1.01140 0.83692 0.95017 1.86906 1.38572 1.26186 1.76702 1.22582 0.84550 1.00076 0.90046 0.86246 1.22492 0.90753 0.95811 0.94784 1.44609 1.22380 1.64378 1.01960 1.19890 0.97791 1.35185 0.93585 0.90354 1.25613 1.00758 1.00097 0.95131 1.70954 1.39924 1.07952 1.35891 0.84251 0.76104 0.76153 0.75770 1.22575 1.20426 1.22443 1.21908 0.88474 1.02062 0.88112 1.21701 0.93381 0.85553 0.98652 0.90076 0.89702 0.90613 0.89876 0.84083 0.82338 0.82274 0.89788 0.91219 0.92155 0.87287 0.94856 0.92955 0.92661 0.90200 0.95159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 9.34 36.00 0.34 -1.44 16 2 C 0.01 0.19 5.95 -103.91 -0.62 -0.43 16 3 C -0.18 -1.90 9.82 -39.50 -0.39 -2.29 16 4 C 0.11 1.16 11.17 -17.47 -0.20 0.96 16 5 N -0.49 -5.88 10.35 -12.91 -0.13 -6.01 16 6 C 0.13 1.59 8.99 -17.13 -0.15 1.44 16 7 C -0.18 -2.56 4.60 -104.82 -0.48 -3.04 16 8 C 0.56 9.37 5.54 -12.34 -0.07 9.30 16 9 O -0.51 -9.93 13.25 5.32 0.07 -9.86 16 10 N -0.58 -9.26 3.09 -169.95 -0.52 -9.79 16 11 C 0.08 0.97 5.03 -5.39 -0.03 0.95 16 12 C 0.06 0.76 6.72 36.63 0.25 1.00 16 13 O -0.37 -5.81 10.25 -34.46 -0.35 -6.17 16 14 C 0.09 1.49 3.81 -26.40 -0.10 1.39 16 15 H 0.12 1.80 8.14 -51.92 -0.42 1.38 16 16 C 0.09 1.90 4.24 -3.41 -0.01 1.89 16 17 N -0.60 -14.89 3.38 -171.44 -0.58 -15.47 16 18 C -0.34 -9.67 10.39 -15.06 -0.16 -9.82 16 19 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 20 C -0.01 -0.42 5.45 -17.43 -0.09 -0.51 16 21 N -0.91 -28.06 13.70 55.49 0.76 -27.30 16 22 Si 1.04 26.19 24.90 -169.99 -4.23 21.96 16 23 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 24 H -0.28 -6.38 5.03 56.52 0.28 -6.10 16 25 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 26 C 0.12 2.57 6.29 -3.23 -0.02 2.55 16 27 C 0.11 1.94 3.35 -68.51 -0.23 1.71 16 28 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.08 0.95 8.13 -51.93 -0.42 0.52 16 31 H 0.08 1.50 6.66 -51.93 -0.35 1.16 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.16 1.62 6.50 -52.48 -0.34 1.28 16 35 H 0.08 1.06 6.11 -51.93 -0.32 0.74 16 36 H 0.07 0.71 6.93 -51.93 -0.36 0.35 16 37 H 0.06 0.96 6.84 -51.93 -0.35 0.60 16 38 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.03 0.76 5.15 -51.93 -0.27 0.49 16 40 H 0.05 1.23 4.61 -51.93 -0.24 0.99 16 41 H 0.26 8.06 8.73 -40.82 -0.36 7.71 16 42 H 0.08 1.84 5.05 -51.92 -0.26 1.58 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -34.05 328.43 -7.57 -41.63 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.56 Total: 2.41 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -1.97 Total: 3.66 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.48 Total: -58.57 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.28 Total: -16.02 kcal Atomic # 14 Polarization: 26.19 SS G_CDS: -4.23 Total: 21.96 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.05 -7.57 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083033612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.309 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds