Wall clock time and date at job start Tue Mar 31 2020 12:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38395 * 120.85507 * 2 1 4 4 C 1.38310 * 119.30176 * 179.97438 * 3 2 1 5 5 N 1.31957 * 121.08493 * 0.02562 * 4 3 2 6 6 C 1.31666 * 121.87667 * 359.67793 * 5 4 3 7 7 C 1.39565 * 120.56663 * 0.59010 * 6 5 4 8 8 C 1.47832 * 120.56168 * 179.72813 * 7 6 5 9 9 O 1.21556 * 119.99959 * 126.81992 * 8 7 6 10 10 N 1.34771 * 120.00054 * 306.82859 * 8 7 6 11 11 C 1.44961 * 117.33850 * 4.67206 * 10 8 7 12 12 C 1.51961 * 111.94071 * 203.73257 * 11 10 8 13 13 O 1.41323 * 111.61094 * 319.70071 * 12 11 10 14 14 C 1.40856 * 118.30317 * 56.89281 * 13 12 11 15 15 H 1.09011 * 109.53608 * 187.74414 * 14 13 12 16 16 C 1.53925 * 110.46219 * 68.19515 * 14 13 12 17 17 N 1.46768 * 107.61688 * 221.66879 * 16 14 13 18 18 C 1.36935 * 125.36219 * 178.66129 * 17 16 14 19 19 H 1.07999 * 120.00326 * 172.48717 * 18 17 16 20 20 C 1.38817 * 120.00163 * 352.47926 * 18 17 16 21 21 N 1.31619 * 120.00488 * 212.89332 * 20 18 17 22 22 Si 1.86800 * 119.99384 * 32.89279 * 20 18 17 23 23 H 1.48503 * 109.47172 * 174.00340 * 22 20 18 24 24 H 1.48501 * 109.47368 * 294.00416 * 22 20 18 25 25 H 1.48503 * 109.47231 * 54.00280 * 22 20 18 26 26 C 1.46869 * 109.27792 * 358.39993 * 17 16 14 27 27 C 1.44547 * 117.34100 * 184.65994 * 10 8 7 28 28 H 1.09008 * 109.64053 * 285.98796 * 27 10 8 29 29 H 1.09005 * 109.46968 * 274.67910 * 1 2 3 30 30 H 1.08998 * 109.47490 * 34.67964 * 1 2 3 31 31 H 1.09000 * 109.47251 * 154.68327 * 1 2 3 32 32 H 1.07994 * 120.34842 * 359.96039 * 3 2 1 33 33 H 1.08005 * 119.45616 * 179.97438 * 4 3 2 34 34 H 1.08005 * 119.71741 * 180.31709 * 6 5 4 35 35 H 1.08997 * 108.98796 * 324.36935 * 11 10 8 36 36 H 1.08996 * 108.98555 * 83.18961 * 11 10 8 37 37 H 1.09007 * 109.05413 * 80.24700 * 12 11 10 38 38 H 1.08999 * 109.05344 * 199.21897 * 12 11 10 39 39 H 1.08997 * 109.95319 * 102.08012 * 16 14 13 40 40 H 1.09000 * 109.70015 * 341.12284 * 16 14 13 41 41 H 0.96999 * 119.99615 * 354.98827 * 21 20 18 42 42 H 1.09008 * 110.07136 * 137.29059 * 26 17 16 43 43 H 1.09001 * 110.07057 * 258.81544 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5993 1.1506 0.0005 5 7 4.2498 0.0025 0.0005 6 6 3.6197 -1.1536 0.0063 7 6 2.2249 -1.2018 0.0003 8 6 1.5175 -2.4999 0.0008 9 8 0.6691 -2.7294 0.8404 10 7 1.8136 -3.4289 -0.9296 11 6 2.9050 -3.1373 -1.8379 12 6 2.7848 -3.9145 -3.1381 13 8 2.3495 -5.2402 -2.9138 14 6 1.1313 -5.4372 -2.2348 15 1 1.0016 -6.4979 -2.0189 16 6 -0.0502 -4.9652 -3.1012 17 7 -0.9879 -4.2541 -2.2243 18 6 -2.1543 -3.6602 -2.6267 19 1 -2.8405 -3.2650 -1.8923 20 6 -2.4548 -3.5661 -3.9787 21 7 -3.1313 -2.5322 -4.4322 22 14 -1.8988 -4.9070 -5.1544 23 1 -2.4640 -4.6484 -6.5031 24 1 -0.4158 -4.9137 -5.2321 25 1 -2.3746 -6.2250 -4.6628 26 6 -0.4814 -4.2850 -0.8460 27 6 1.0170 -4.6351 -0.9403 28 1 1.2989 -5.2679 -0.0987 29 1 -0.3633 0.0838 1.0243 30 1 -0.3634 0.8451 -0.5847 31 1 -0.3634 -0.9290 -0.4394 32 1 1.6965 2.1345 -0.0006 33 1 4.1558 2.0763 0.0001 34 1 4.1871 -2.0726 0.0113 35 1 2.9052 -2.0704 -2.0611 36 1 3.8470 -3.3987 -1.3558 37 1 2.0701 -3.4108 -3.7891 38 1 3.7575 -3.9388 -3.6295 39 1 -0.5460 -5.8239 -3.5537 40 1 0.3106 -4.2928 -3.8795 41 1 -3.4827 -1.8733 -3.8131 42 1 -0.6086 -3.3085 -0.3787 43 1 -1.0080 -5.0467 -0.2710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083033612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:22 Heat of formation + Delta-G solvation = -3.274529 kcal Electronic energy + Delta-G solvation = -28381.745384 eV Core-core repulsion = 24621.143326 eV Total energy + Delta-G solvation = -3760.602058 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.61206 -41.16085 -39.66826 -37.87967 -36.38933 -34.99103 -34.64514 -32.74819 -31.91726 -29.83281 -29.68572 -28.84051 -26.36405 -25.23855 -25.04232 -23.46646 -22.54378 -21.90159 -20.39223 -19.50572 -18.85530 -18.62424 -17.64890 -17.45795 -17.37899 -17.17842 -16.31812 -16.20478 -15.88265 -15.72476 -15.33480 -15.25310 -15.06352 -14.80898 -14.65908 -14.14606 -13.96099 -13.78344 -13.64592 -13.57902 -13.36560 -12.99444 -12.93886 -12.86278 -12.57065 -12.15896 -11.97951 -11.79897 -11.45384 -11.09100 -10.76484 -10.63456 -10.46243 -10.44596 -10.15010 -9.71956 -9.16012 -8.77826 -5.42565 -0.28949 0.10245 1.36467 1.37077 1.47026 1.66568 1.73140 2.47757 2.57964 2.68404 2.91256 3.07066 3.34312 3.39890 3.44833 3.51198 3.57491 3.69571 3.74180 3.93879 3.97233 4.06210 4.15470 4.27338 4.29996 4.35752 4.40292 4.50737 4.56013 4.62403 4.66909 4.76055 4.78053 4.85760 4.88658 4.96805 5.04959 5.18220 5.44160 5.54233 5.56515 6.01964 6.02641 6.22940 6.77368 6.79685 6.91128 7.42733 8.06972 8.74808 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.005432 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.828510 B = 5153.408407 C = 5879.887972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.009 4.009 3 C -0.171 4.171 4 C 0.123 3.877 5 N -0.500 5.500 6 C 0.139 3.861 7 C -0.201 4.201 8 C 0.559 3.441 9 O -0.553 6.553 10 N -0.585 5.585 11 C 0.072 3.928 12 C 0.050 3.950 13 O -0.361 6.361 14 C 0.100 3.900 15 H 0.151 0.849 16 C 0.080 3.920 17 N -0.620 5.620 18 C -0.333 4.333 19 H 0.040 0.960 20 C -0.066 4.066 21 N -0.938 5.938 22 Si 1.087 2.913 23 H -0.306 1.306 24 H -0.243 1.243 25 H -0.283 1.283 26 C 0.117 3.883 27 C 0.120 3.880 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.034 0.966 32 H 0.170 0.830 33 H 0.199 0.801 34 H 0.180 0.820 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.031 0.969 38 H 0.154 0.846 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.248 0.752 42 H 0.056 0.944 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.568 3.054 7.030 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.017 4.017 3 C -0.191 4.191 4 C -0.033 4.033 5 N -0.209 5.209 6 C -0.019 4.019 7 C -0.206 4.206 8 C 0.347 3.653 9 O -0.432 6.432 10 N -0.317 5.317 11 C -0.050 4.050 12 C -0.027 4.027 13 O -0.277 6.277 14 C 0.041 3.959 15 H 0.168 0.832 16 C -0.045 4.045 17 N -0.349 5.349 18 C -0.461 4.461 19 H 0.058 0.942 20 C -0.261 4.261 21 N -0.581 5.581 22 Si 0.913 3.087 23 H -0.234 1.234 24 H -0.167 1.167 25 H -0.210 1.210 26 C -0.009 4.009 27 C 0.016 3.984 28 H 0.123 0.877 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.187 0.813 33 H 0.216 0.784 34 H 0.197 0.803 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.049 0.951 38 H 0.172 0.828 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 20.127 2.353 5.770 21.070 hybrid contribution -2.533 0.828 1.796 3.213 sum 17.594 3.181 7.566 19.414 Atomic orbital electron populations 1.20811 0.90627 1.02500 1.03338 1.20533 0.96676 0.92660 0.91852 1.22321 0.95977 0.98521 1.02242 1.23564 0.91657 0.97252 0.90794 1.67820 1.40724 0.98598 1.13737 1.23221 0.88977 0.97750 0.91925 1.20806 0.96600 0.93108 1.10101 1.18553 0.81803 0.83951 0.80973 1.90723 1.33528 1.79979 1.38975 1.46699 1.34053 1.18189 1.32759 1.22081 0.89838 1.01415 0.91666 1.22611 1.02412 0.82552 0.95119 1.86939 1.37139 1.27353 1.76309 1.22527 0.83394 1.01355 0.88605 0.83206 1.22625 0.91841 0.94981 0.95036 1.44570 1.21548 1.64788 1.03976 1.19714 0.98691 1.34658 0.92991 0.94224 1.26917 1.00990 1.01083 0.97142 1.71072 1.42206 1.09108 1.35696 0.83748 0.77963 0.73703 0.73283 1.23423 1.16738 1.21032 1.21963 0.91815 1.00843 0.86281 1.21555 0.90502 0.86520 0.99867 0.87655 0.89515 0.89238 0.94715 0.81275 0.78444 0.80269 0.89655 0.87320 0.95052 0.82836 0.94740 0.94581 0.94260 0.92653 0.95300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.53 9.34 71.23 0.67 -2.87 16 2 C -0.01 -0.24 5.95 -19.40 -0.12 -0.35 16 3 C -0.17 -3.21 9.82 22.32 0.22 -2.99 16 4 C 0.12 2.03 11.17 84.69 0.95 2.98 16 5 N -0.50 -10.22 10.35 -194.74 -2.01 -12.24 16 6 C 0.14 3.02 8.99 85.04 0.76 3.78 16 7 C -0.20 -5.57 4.60 -19.99 -0.09 -5.66 16 8 C 0.56 18.77 5.54 86.78 0.48 19.25 16 9 O -0.55 -22.40 13.25 -3.89 -0.05 -22.45 16 10 N -0.58 -17.99 3.09 -809.87 -2.50 -20.49 16 11 C 0.07 1.64 5.03 86.33 0.43 2.08 16 12 C 0.05 1.19 6.72 71.64 0.48 1.67 16 13 O -0.36 -10.07 10.25 -146.21 -1.50 -11.56 16 14 C 0.10 3.20 3.81 30.81 0.12 3.32 16 15 H 0.15 3.92 8.14 -2.38 -0.02 3.90 16 16 C 0.08 3.41 4.24 86.64 0.37 3.78 16 17 N -0.62 -31.35 3.38 -696.31 -2.35 -33.70 16 18 C -0.33 -20.03 10.39 84.03 0.87 -19.16 16 19 H 0.04 2.62 8.06 -2.91 -0.02 2.60 16 20 C -0.07 -3.98 5.45 84.86 0.46 -3.52 16 21 N -0.94 -60.73 13.70 21.65 0.30 -60.43 16 22 Si 1.09 53.34 24.90 68.60 1.71 55.04 16 23 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 24 H -0.24 -10.54 5.03 99.48 0.50 -10.04 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 26 C 0.12 5.12 6.29 86.70 0.54 5.67 16 27 C 0.12 4.03 3.35 45.65 0.15 4.18 16 28 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 29 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.09 2.34 8.13 -2.39 -0.02 2.32 16 31 H 0.03 1.37 6.66 -2.39 -0.02 1.36 16 32 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.18 2.99 6.50 -2.91 -0.02 2.97 16 35 H 0.09 1.95 6.11 -2.39 -0.01 1.94 16 36 H 0.11 1.69 6.93 -2.39 -0.02 1.67 16 37 H 0.03 0.94 6.84 -2.38 -0.02 0.92 16 38 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.04 1.50 5.15 -2.39 -0.01 1.48 16 40 H 0.04 1.67 4.61 -2.39 -0.01 1.65 16 41 H 0.25 16.22 8.73 -92.71 -0.81 15.41 16 42 H 0.06 2.74 5.05 -2.38 -0.01 2.73 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -79.75 328.43 0.69 -79.06 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.80 Total: 14.61 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 6.30 Total: 12.16 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -6.57 Total: -126.87 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.55 Total: -34.01 kcal Atomic # 14 Polarization: 53.34 SS G_CDS: 1.71 Total: 55.04 kcal Total: -79.75 0.69 -79.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083033612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.787 kcal (2) G-P(sol) polarization free energy of solvation -79.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds