Wall clock time and date at job start Tue Mar 31 2020 11:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38356 * 120.34681 * 2 1 4 4 N 1.31929 * 121.07676 * 180.02562 * 3 2 1 5 5 C 1.31699 * 121.87856 * 359.67744 * 4 3 2 6 6 C 1.39524 * 120.56553 * 0.59154 * 5 4 3 7 7 C 1.47841 * 120.55749 * 179.72618 * 6 5 4 8 8 O 1.21545 * 120.00146 * 150.07126 * 7 6 5 9 9 N 1.34780 * 119.99778 * 330.06818 * 7 6 5 10 10 C 1.44959 * 117.33919 * 7.05257 * 9 7 6 11 11 C 1.51960 * 111.93981 * 203.77794 * 10 9 7 12 12 O 1.41330 * 111.60554 * 319.69907 * 11 10 9 13 13 C 1.40850 * 118.30819 * 56.89592 * 12 11 10 14 14 H 1.08992 * 109.53998 * 187.73886 * 13 12 11 15 15 C 1.53926 * 110.45859 * 68.18864 * 13 12 11 16 16 N 1.46772 * 107.61841 * 221.67103 * 15 13 12 17 17 C 1.36939 * 125.36396 * 178.66576 * 16 15 13 18 18 H 1.07997 * 120.00377 * 176.68440 * 17 16 15 19 19 C 1.38812 * 119.99781 * 356.68138 * 17 16 15 20 20 N 1.31617 * 119.99997 * 210.47140 * 19 17 16 21 21 Si 1.86805 * 119.99806 * 30.47187 * 19 17 16 22 22 H 1.48502 * 109.46782 * 173.64974 * 21 19 17 23 23 H 1.48494 * 109.47181 * 293.64643 * 21 19 17 24 24 H 1.48496 * 109.47157 * 53.65085 * 21 19 17 25 25 C 1.46872 * 109.27826 * 358.40443 * 16 15 13 26 26 C 1.44548 * 117.33742 * 187.07437 * 9 7 6 27 27 H 1.08993 * 109.64242 * 285.94827 * 26 9 7 28 28 C 1.38355 * 120.34498 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46602 * 270.01877 * 1 2 3 30 30 H 1.09001 * 109.46957 * 30.01278 * 1 2 3 31 31 H 1.08999 * 109.47136 * 150.01913 * 1 2 3 32 32 H 1.07998 * 119.46316 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.71658 * 180.28777 * 5 4 3 34 34 H 1.08998 * 108.98999 * 324.41117 * 10 9 7 35 35 H 1.09002 * 108.98854 * 83.14609 * 10 9 7 36 36 H 1.09002 * 109.05667 * 80.24606 * 11 10 9 37 37 H 1.08998 * 109.05509 * 199.21921 * 11 10 9 38 38 H 1.09007 * 109.95061 * 102.08540 * 15 13 12 39 39 H 1.08999 * 109.70676 * 341.12638 * 15 13 12 40 40 H 0.97001 * 120.00427 * 354.97029 * 20 19 17 41 41 H 1.08995 * 110.07139 * 137.28657 * 25 16 15 42 42 H 1.08993 * 110.07022 * 258.81951 * 25 16 15 43 43 H 1.07991 * 120.85830 * 0.04097 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5253 1.2108 -0.0005 5 6 4.2350 0.1014 0.0053 6 6 3.6054 -1.1437 -0.0002 7 6 4.4023 -2.3889 0.0002 8 8 3.9594 -3.3938 0.5212 9 7 5.6200 -2.4099 -0.5773 10 6 6.1584 -1.1466 -1.0416 11 6 7.1914 -1.3389 -2.1394 12 8 8.0322 -2.4437 -1.8751 13 6 7.4366 -3.7056 -1.6833 14 1 8.1925 -4.4195 -1.3564 15 6 6.8179 -4.2139 -2.9979 16 7 5.5203 -4.8182 -2.6737 17 6 4.6507 -5.3623 -3.5808 18 1 3.7402 -5.8332 -3.2407 19 6 4.9394 -5.3087 -4.9375 20 7 3.9616 -5.2497 -5.8166 21 14 6.7157 -5.3202 -5.5155 22 1 6.7535 -5.4108 -6.9973 23 1 7.3864 -4.0693 -5.0789 24 1 7.4193 -6.4895 -4.9300 25 6 5.3041 -4.7531 -1.2224 26 6 6.2823 -3.6903 -0.6835 27 1 6.6505 -3.9947 0.2961 28 6 2.2060 -1.1940 0.0005 29 1 -0.3632 0.0003 1.0277 30 1 -0.3633 0.8899 -0.5140 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6630 2.1275 -0.0004 33 1 5.3136 0.1559 0.0093 34 1 5.3432 -0.5332 -1.4253 35 1 6.6245 -0.6299 -0.2026 36 1 6.6777 -1.5014 -3.0870 37 1 7.8014 -0.4389 -2.2156 38 1 7.4701 -4.9601 -3.4518 39 1 6.6758 -3.3790 -3.6842 40 1 3.0399 -5.3172 -5.5221 41 1 4.2767 -4.4575 -1.0102 42 1 5.5166 -5.7211 -0.7688 43 1 1.6858 -2.1404 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083034661.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:33 Heat of formation + Delta-G solvation = 41.747010 kcal Electronic energy + Delta-G solvation = -27942.673298 eV Core-core repulsion = 24184.023521 eV Total energy + Delta-G solvation = -3758.649777 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49912 -40.09831 -38.46212 -36.33423 -35.35900 -33.78629 -32.87505 -31.97139 -30.52404 -28.31896 -28.19299 -27.54189 -24.94054 -24.35226 -23.43970 -22.66280 -21.04655 -20.29800 -19.21173 -17.82879 -17.45929 -17.19890 -17.07869 -16.47098 -15.90048 -15.80513 -15.05796 -14.86880 -14.56162 -14.38749 -14.20429 -13.61305 -13.53204 -13.26926 -13.23654 -12.99598 -12.92094 -12.75499 -12.47539 -12.14665 -12.09896 -11.53855 -11.44138 -11.29560 -10.98763 -10.71840 -10.36184 -10.04056 -9.91669 -9.82364 -9.60094 -9.34127 -9.10251 -8.99390 -8.46478 -8.36662 -7.09219 -6.39169 -3.15673 0.54394 1.00770 2.65847 2.87079 3.39518 3.50037 3.58092 3.67858 3.80249 4.06970 4.27890 4.53103 4.58626 4.59896 4.64503 4.75525 4.77231 4.86029 4.91247 4.99287 5.09473 5.14950 5.30177 5.33552 5.41306 5.43371 5.45857 5.56568 5.62170 5.71863 5.75561 5.85123 5.89686 5.98387 6.19467 6.37279 6.41675 6.57799 6.61664 6.89162 7.21870 7.44386 7.64900 7.70439 8.12119 8.32044 9.02636 9.58535 10.22561 11.11938 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014640 B = 0.004932 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.070894 B = 5675.811964 C = 6432.281122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.144 4.144 3 C 0.114 3.886 4 N -0.484 5.484 5 C 0.098 3.902 6 C -0.175 4.175 7 C 0.560 3.440 8 O -0.518 6.518 9 N -0.579 5.579 10 C 0.061 3.939 11 C 0.053 3.947 12 O -0.366 6.366 13 C 0.086 3.914 14 H 0.121 0.879 15 C 0.089 3.911 16 N -0.605 5.605 17 C -0.334 4.334 18 H 0.079 0.921 19 C -0.017 4.017 20 N -0.912 5.912 21 Si 1.050 2.950 22 H -0.298 1.298 23 H -0.279 1.279 24 H -0.296 1.296 25 C 0.122 3.878 26 C 0.112 3.888 27 H 0.083 0.917 28 C -0.018 4.018 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.035 0.965 39 H 0.052 0.948 40 H 0.262 0.738 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.748 13.765 12.905 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.146 4.146 3 C -0.043 4.043 4 N -0.192 5.192 5 C -0.059 4.059 6 C -0.180 4.180 7 C 0.348 3.652 8 O -0.395 6.395 9 N -0.312 5.312 10 C -0.062 4.062 11 C -0.024 4.024 12 O -0.283 6.283 13 C 0.027 3.973 14 H 0.139 0.861 15 C -0.037 4.037 16 N -0.334 5.334 17 C -0.461 4.461 18 H 0.097 0.903 19 C -0.218 4.218 20 N -0.553 5.553 21 Si 0.883 3.117 22 H -0.226 1.226 23 H -0.206 1.206 24 H -0.225 1.225 25 C -0.004 4.004 26 C 0.008 3.992 27 H 0.101 0.899 28 C -0.044 4.044 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.176 0.824 33 H 0.197 0.803 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.129 0.871 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.050 0.950 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.085 14.097 11.751 18.471 hybrid contribution -1.647 -1.150 1.253 2.368 sum 0.438 12.948 13.004 18.356 Atomic orbital electron populations 1.20739 0.89604 1.03586 1.02783 1.20919 0.98035 0.93693 1.01970 1.22891 0.90102 0.97576 0.93704 1.67785 1.07989 1.30777 1.12658 1.24093 1.01786 0.86754 0.93253 1.20980 0.95222 0.95087 1.06733 1.18097 0.80808 0.87576 0.78707 1.90751 1.70326 1.34391 1.44027 1.46509 1.18140 1.07517 1.59041 1.22512 0.98843 0.86313 0.98522 1.22385 0.92983 0.90100 0.96961 1.86909 1.34800 1.15407 1.91200 1.22589 0.94780 0.85098 0.94789 0.86136 1.22472 0.88516 0.97275 0.95391 1.44622 1.17341 1.69617 1.01819 1.19958 1.00500 1.37942 0.87698 0.90339 1.25660 1.05814 0.99076 0.91295 1.70945 1.00148 1.47657 1.36509 0.84156 0.75874 0.76839 0.74816 1.22600 1.20606 1.22452 1.21868 0.99365 0.94325 0.84890 1.21705 0.94665 0.83365 0.99508 0.89918 1.21609 0.92296 0.99107 0.91435 0.90702 0.90911 0.90880 0.82406 0.80267 0.88431 0.90560 0.91980 0.87092 0.94791 0.93053 0.92726 0.90571 0.94959 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.03 36.01 0.36 -0.48 16 2 C -0.14 -1.55 5.89 -104.53 -0.62 -2.16 16 3 C 0.11 1.19 10.85 -17.47 -0.19 1.00 16 4 N -0.48 -5.87 10.35 -12.91 -0.13 -6.00 16 5 C 0.10 1.20 8.63 -17.13 -0.15 1.05 16 6 C -0.18 -2.51 5.48 -104.82 -0.57 -3.08 16 7 C 0.56 9.50 6.72 -12.33 -0.08 9.42 16 8 O -0.52 -10.22 14.16 5.33 0.08 -10.15 16 9 N -0.58 -9.31 3.09 -169.94 -0.52 -9.84 16 10 C 0.06 0.76 4.65 -5.40 -0.03 0.74 16 11 C 0.05 0.70 6.72 36.63 0.25 0.95 16 12 O -0.37 -5.75 10.24 -34.45 -0.35 -6.10 16 13 C 0.09 1.49 3.82 -26.40 -0.10 1.39 16 14 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 15 C 0.09 1.96 4.23 -3.41 -0.01 1.94 16 16 N -0.61 -15.16 3.37 -171.43 -0.58 -15.74 16 17 C -0.33 -9.75 10.41 -15.06 -0.16 -9.91 16 18 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 19 C -0.02 -0.52 5.45 -17.43 -0.09 -0.61 16 20 N -0.91 -28.70 13.70 55.49 0.76 -27.94 16 21 Si 1.05 26.54 24.83 -169.99 -4.22 22.31 16 22 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 23 H -0.28 -6.46 5.10 56.52 0.29 -6.17 16 24 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 25 C 0.12 2.64 6.29 -3.23 -0.02 2.62 16 26 C 0.11 1.96 3.33 -68.51 -0.23 1.73 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 C -0.02 -0.24 9.41 -38.87 -0.37 -0.61 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.18 1.80 4.08 -52.48 -0.21 1.59 16 34 H 0.10 1.18 4.93 -51.93 -0.26 0.92 16 35 H 0.08 0.73 6.81 -51.93 -0.35 0.38 16 36 H 0.06 0.97 6.84 -51.93 -0.35 0.61 16 37 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.03 0.78 4.82 -51.93 -0.25 0.53 16 39 H 0.05 1.21 4.88 -51.93 -0.25 0.96 16 40 H 0.26 8.20 8.73 -40.82 -0.36 7.85 16 41 H 0.08 1.81 5.15 -51.93 -0.27 1.54 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.14 1.95 7.98 -52.49 -0.42 1.54 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -35.28 328.21 -7.47 -42.75 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.43 Total: 1.77 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -2.01 Total: 3.99 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.48 Total: -59.52 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.28 Total: -16.25 kcal Atomic # 14 Polarization: 26.54 SS G_CDS: -4.22 Total: 22.31 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.28 -7.47 -42.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083034661.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.497 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds