Wall clock time and date at job start Tue Mar 31 2020 11:50:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.38356 * 120.34681 * 2 1
4 4 N 1.31929 * 121.07676 * 180.02562 * 3 2 1
5 5 C 1.31699 * 121.87856 * 359.67744 * 4 3 2
6 6 C 1.39524 * 120.56553 * 0.59154 * 5 4 3
7 7 C 1.47841 * 120.55749 * 179.72618 * 6 5 4
8 8 O 1.21545 * 120.00146 * 150.07126 * 7 6 5
9 9 N 1.34780 * 119.99778 * 330.06818 * 7 6 5
10 10 C 1.44959 * 117.33919 * 7.05257 * 9 7 6
11 11 C 1.51960 * 111.93981 * 203.77794 * 10 9 7
12 12 O 1.41330 * 111.60554 * 319.69907 * 11 10 9
13 13 C 1.40850 * 118.30819 * 56.89592 * 12 11 10
14 14 H 1.08992 * 109.53998 * 187.73886 * 13 12 11
15 15 C 1.53926 * 110.45859 * 68.18864 * 13 12 11
16 16 N 1.46772 * 107.61841 * 221.67103 * 15 13 12
17 17 C 1.36939 * 125.36396 * 178.66576 * 16 15 13
18 18 H 1.07997 * 120.00377 * 176.68440 * 17 16 15
19 19 C 1.38812 * 119.99781 * 356.68138 * 17 16 15
20 20 N 1.31617 * 119.99997 * 210.47140 * 19 17 16
21 21 Si 1.86805 * 119.99806 * 30.47187 * 19 17 16
22 22 H 1.48502 * 109.46782 * 173.64974 * 21 19 17
23 23 H 1.48494 * 109.47181 * 293.64643 * 21 19 17
24 24 H 1.48496 * 109.47157 * 53.65085 * 21 19 17
25 25 C 1.46872 * 109.27826 * 358.40443 * 16 15 13
26 26 C 1.44548 * 117.33742 * 187.07437 * 9 7 6
27 27 H 1.08993 * 109.64242 * 285.94827 * 26 9 7
28 28 C 1.38355 * 120.34498 * 179.97438 * 2 1 3
29 29 H 1.08997 * 109.46602 * 270.01877 * 1 2 3
30 30 H 1.09001 * 109.46957 * 30.01278 * 1 2 3
31 31 H 1.08999 * 109.47136 * 150.01913 * 1 2 3
32 32 H 1.07998 * 119.46316 * 359.97438 * 3 2 1
33 33 H 1.08003 * 119.71658 * 180.28777 * 5 4 3
34 34 H 1.08998 * 108.98999 * 324.41117 * 10 9 7
35 35 H 1.09002 * 108.98854 * 83.14609 * 10 9 7
36 36 H 1.09002 * 109.05667 * 80.24606 * 11 10 9
37 37 H 1.08998 * 109.05509 * 199.21921 * 11 10 9
38 38 H 1.09007 * 109.95061 * 102.08540 * 15 13 12
39 39 H 1.08999 * 109.70676 * 341.12638 * 15 13 12
40 40 H 0.97001 * 120.00427 * 354.97029 * 20 19 17
41 41 H 1.08995 * 110.07139 * 137.28657 * 25 16 15
42 42 H 1.08993 * 110.07022 * 258.81951 * 25 16 15
43 43 H 1.07991 * 120.85830 * 0.04097 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.2061 1.1940 0.0000
4 7 3.5253 1.2108 -0.0005
5 6 4.2350 0.1014 0.0053
6 6 3.6054 -1.1437 -0.0002
7 6 4.4023 -2.3889 0.0002
8 8 3.9594 -3.3938 0.5212
9 7 5.6200 -2.4099 -0.5773
10 6 6.1584 -1.1466 -1.0416
11 6 7.1914 -1.3389 -2.1394
12 8 8.0322 -2.4437 -1.8751
13 6 7.4366 -3.7056 -1.6833
14 1 8.1925 -4.4195 -1.3564
15 6 6.8179 -4.2139 -2.9979
16 7 5.5203 -4.8182 -2.6737
17 6 4.6507 -5.3623 -3.5808
18 1 3.7402 -5.8332 -3.2407
19 6 4.9394 -5.3087 -4.9375
20 7 3.9616 -5.2497 -5.8166
21 14 6.7157 -5.3202 -5.5155
22 1 6.7535 -5.4108 -6.9973
23 1 7.3864 -4.0693 -5.0789
24 1 7.4193 -6.4895 -4.9300
25 6 5.3041 -4.7531 -1.2224
26 6 6.2823 -3.6903 -0.6835
27 1 6.6505 -3.9947 0.2961
28 6 2.2060 -1.1940 0.0005
29 1 -0.3632 0.0003 1.0277
30 1 -0.3633 0.8899 -0.5140
31 1 -0.3633 -0.8901 -0.5135
32 1 1.6630 2.1275 -0.0004
33 1 5.3136 0.1559 0.0093
34 1 5.3432 -0.5332 -1.4253
35 1 6.6245 -0.6299 -0.2026
36 1 6.6777 -1.5014 -3.0870
37 1 7.8014 -0.4389 -2.2156
38 1 7.4701 -4.9601 -3.4518
39 1 6.6758 -3.3790 -3.6842
40 1 3.0399 -5.3172 -5.5221
41 1 4.2767 -4.4575 -1.0102
42 1 5.5166 -5.7211 -0.7688
43 1 1.6858 -2.1404 0.0003
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001083034661.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:50:32
Heat of formation + Delta-G solvation = 14.554433 kcal
Electronic energy + Delta-G solvation = -27943.852457 eV
Core-core repulsion = 24184.023521 eV
Total energy + Delta-G solvation = -3759.828936 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.153 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.70297 -41.18274 -39.73287 -37.95310 -36.58587 -34.86438 -34.54165 -33.28044
-32.04419 -29.86849 -29.62590 -28.38563 -26.49189 -25.56068 -24.86512 -23.67751
-22.69274 -21.71968 -20.53502 -19.61108 -18.73854 -18.65333 -18.13705 -17.54988
-17.30474 -17.09133 -16.31749 -16.21684 -15.90350 -15.73281 -15.34086 -15.25626
-14.88889 -14.72951 -14.50983 -14.22521 -14.04273 -13.75005 -13.65026 -13.51711
-13.23627 -13.03010 -12.95821 -12.77112 -12.43686 -12.17257 -11.99790 -11.81116
-11.44459 -11.13296 -10.92318 -10.75931 -10.51055 -10.46594 -9.94883 -9.75374
-9.20972 -8.78237 -5.46405 -0.42959 0.06358 1.36718 1.42422 1.47050
1.67121 1.70978 2.47439 2.54861 2.68394 2.92344 3.02882 3.27000
3.35541 3.44324 3.49955 3.66716 3.72736 3.73947 3.84691 3.92682
3.99633 4.10569 4.13512 4.23527 4.32888 4.47626 4.52094 4.60416
4.68056 4.76463 4.77062 4.82673 4.83545 4.89774 4.97033 5.08969
5.17372 5.39743 5.49948 5.53176 5.98756 5.99673 6.22027 6.73066
6.75507 6.86967 7.39606 8.02659 8.74103
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.014640 B = 0.004932 C = 0.004352
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1912.070894 B = 5675.811964 C = 6432.281122
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.140 4.140
3 C 0.120 3.880
4 N -0.493 5.493
5 C 0.106 3.894
6 C -0.198 4.198
7 C 0.554 3.446
8 O -0.560 6.560
9 N -0.584 5.584
10 C 0.055 3.945
11 C 0.046 3.954
12 O -0.360 6.360
13 C 0.101 3.899
14 H 0.152 0.848
15 C 0.081 3.919
16 N -0.622 5.622
17 C -0.331 4.331
18 H 0.038 0.962
19 C -0.070 4.070
20 N -0.943 5.943
21 Si 1.093 2.907
22 H -0.306 1.306
23 H -0.243 1.243
24 H -0.282 1.282
25 C 0.118 3.882
26 C 0.121 3.879
27 H 0.108 0.892
28 C -0.042 4.042
29 H 0.090 0.910
30 H 0.096 0.904
31 H 0.063 0.937
32 H 0.196 0.804
33 H 0.204 0.796
34 H 0.102 0.898
35 H 0.119 0.881
36 H 0.033 0.967
37 H 0.159 0.841
38 H 0.037 0.963
39 H 0.036 0.964
40 H 0.246 0.754
41 H 0.048 0.952
42 H 0.033 0.967
43 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.199 16.946 14.148 22.306
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.142 4.142
3 C -0.036 4.036
4 N -0.200 5.200
5 C -0.051 4.051
6 C -0.203 4.203
7 C 0.343 3.657
8 O -0.440 6.440
9 N -0.316 5.316
10 C -0.067 4.067
11 C -0.030 4.030
12 O -0.276 6.276
13 C 0.042 3.958
14 H 0.170 0.830
15 C -0.044 4.044
16 N -0.350 5.350
17 C -0.459 4.459
18 H 0.056 0.944
19 C -0.264 4.264
20 N -0.586 5.586
21 Si 0.919 3.081
22 H -0.234 1.234
23 H -0.167 1.167
24 H -0.209 1.209
25 C -0.008 4.008
26 C 0.016 3.984
27 H 0.125 0.875
28 C -0.069 4.069
29 H 0.108 0.892
30 H 0.115 0.885
31 H 0.082 0.918
32 H 0.213 0.787
33 H 0.220 0.780
34 H 0.119 0.881
35 H 0.137 0.863
36 H 0.052 0.948
37 H 0.176 0.824
38 H 0.054 0.946
39 H 0.054 0.946
40 H 0.056 0.944
41 H 0.066 0.934
42 H 0.050 0.950
43 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 4.558 17.320 13.034 22.150
hybrid contribution -2.603 -2.095 0.914 3.464
sum 1.954 15.225 13.948 20.741
Atomic orbital electron populations
1.20823 0.87440 1.04341 1.03979 1.21223 0.99578 0.92760 1.00651
1.23531 0.89830 0.98738 0.91538 1.67893 1.08800 1.30337 1.13005
1.24345 1.02794 0.85723 0.92232 1.20908 0.95332 0.94863 1.09241
1.18580 0.81063 0.88013 0.78034 1.90716 1.71183 1.36084 1.46048
1.46655 1.18019 1.08227 1.58661 1.22855 0.98972 0.84922 0.99920
1.22706 0.93659 0.90941 0.95703 1.86945 1.34818 1.14989 1.90887
1.22526 0.94955 0.86683 0.91614 0.83033 1.22634 0.87060 0.96472
0.98238 1.44587 1.18405 1.69373 1.02665 1.19790 1.00018 1.37163
0.88955 0.94388 1.27032 1.09021 0.98806 0.91574 1.71069 0.99780
1.50624 1.37140 0.83654 0.71551 0.78930 0.73935 1.23429 1.16738
1.20855 1.21919 0.99422 0.96086 0.83348 1.21562 0.93395 0.82962
1.00477 0.87482 1.21706 0.92554 0.99741 0.92877 0.89178 0.88510
0.91770 0.78678 0.78045 0.88077 0.86311 0.94836 0.82363 0.94595
0.94577 0.94422 0.93395 0.94971 0.85540
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.49 10.03 71.24 0.71 -0.77 16
2 C -0.14 -2.83 5.89 -19.81 -0.12 -2.95 16
3 C 0.12 2.17 10.85 84.71 0.92 3.09 16
4 N -0.49 -10.52 10.35 -194.74 -2.01 -12.53 16
5 C 0.11 2.35 8.63 85.02 0.73 3.08 16
6 C -0.20 -5.67 5.48 -19.99 -0.11 -5.78 16
7 C 0.55 19.04 6.72 86.78 0.58 19.62 16
8 O -0.56 -23.25 14.16 -3.86 -0.05 -23.30 16
9 N -0.58 -17.98 3.09 -809.85 -2.50 -20.48 16
10 C 0.05 1.19 4.65 86.33 0.40 1.59 16
11 C 0.05 1.06 6.72 71.64 0.48 1.54 16
12 O -0.36 -9.78 10.24 -146.19 -1.50 -11.28 16
13 C 0.10 3.21 3.82 30.81 0.12 3.32 16
14 H 0.15 3.90 8.14 -2.39 -0.02 3.88 16
15 C 0.08 3.44 4.23 86.64 0.37 3.81 16
16 N -0.62 -31.74 3.37 -696.29 -2.35 -34.09 16
17 C -0.33 -20.24 10.41 84.03 0.87 -19.37 16
18 H 0.04 2.56 8.06 -2.91 -0.02 2.53 16
19 C -0.07 -4.26 5.45 84.86 0.46 -3.80 16
20 N -0.94 -61.89 13.70 21.65 0.30 -61.60 16
21 Si 1.09 53.69 24.83 68.60 1.70 55.39 16
22 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16
23 H -0.24 -10.48 5.10 99.48 0.51 -9.97 16
24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16
25 C 0.12 5.24 6.29 86.71 0.55 5.78 16
26 C 0.12 4.05 3.33 45.66 0.15 4.20 16
27 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16
28 C -0.04 -1.17 9.41 22.73 0.21 -0.95 16
29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
30 H 0.10 0.88 8.09 -2.39 -0.02 0.86 16
31 H 0.06 1.00 8.09 -2.39 -0.02 0.99 16
32 H 0.20 1.97 8.06 -2.91 -0.02 1.94 16
33 H 0.20 3.32 4.08 -2.91 -0.01 3.31 16
34 H 0.10 2.18 4.93 -2.39 -0.01 2.16 16
35 H 0.12 1.65 6.81 -2.39 -0.02 1.64 16
36 H 0.03 0.97 6.84 -2.39 -0.02 0.95 16
37 H 0.16 2.13 8.14 -2.39 -0.02 2.11 16
38 H 0.04 1.55 4.82 -2.38 -0.01 1.54 16
39 H 0.04 1.66 4.88 -2.39 -0.01 1.65 16
40 H 0.25 16.39 8.73 -92.71 -0.81 15.58 16
41 H 0.05 2.42 5.15 -2.39 -0.01 2.41 16
42 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16
43 H 0.13 3.80 7.98 -2.92 -0.02 3.78 16
Total: -1.00 -82.36 328.21 0.74 -81.62
By element:
Atomic # 1 Polarization: 13.03 SS G_CDS: 0.81 Total: 13.84 kcal
Atomic # 6 Polarization: 6.08 SS G_CDS: 6.34 Total: 12.42 kcal
Atomic # 7 Polarization: -122.14 SS G_CDS: -6.56 Total: -128.70 kcal
Atomic # 8 Polarization: -33.03 SS G_CDS: -1.55 Total: -34.58 kcal
Atomic # 14 Polarization: 53.69 SS G_CDS: 1.70 Total: 55.39 kcal
Total: -82.36 0.74 -81.62 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001083034661.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.174 kcal
(2) G-P(sol) polarization free energy of solvation -82.360 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.814 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.620 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.554 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds