Wall clock time and date at job start Tue Mar 31 2020 11:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38356 * 120.34681 * 2 1 4 4 N 1.31929 * 121.07676 * 180.02562 * 3 2 1 5 5 C 1.31699 * 121.87856 * 359.67744 * 4 3 2 6 6 C 1.39524 * 120.56553 * 0.59154 * 5 4 3 7 7 C 1.47841 * 120.55749 * 179.72618 * 6 5 4 8 8 O 1.21545 * 120.00146 * 150.07126 * 7 6 5 9 9 N 1.34780 * 119.99778 * 330.06818 * 7 6 5 10 10 C 1.44959 * 117.33919 * 7.05257 * 9 7 6 11 11 C 1.51960 * 111.93981 * 203.77794 * 10 9 7 12 12 O 1.41330 * 111.60554 * 319.69907 * 11 10 9 13 13 C 1.40850 * 118.30819 * 56.89592 * 12 11 10 14 14 H 1.08992 * 109.53998 * 187.73886 * 13 12 11 15 15 C 1.53926 * 110.45859 * 68.18864 * 13 12 11 16 16 N 1.46772 * 107.61841 * 221.67103 * 15 13 12 17 17 C 1.36939 * 125.36396 * 178.66576 * 16 15 13 18 18 H 1.07997 * 120.00377 * 176.68440 * 17 16 15 19 19 C 1.38812 * 119.99781 * 356.68138 * 17 16 15 20 20 N 1.31617 * 119.99997 * 210.47140 * 19 17 16 21 21 Si 1.86805 * 119.99806 * 30.47187 * 19 17 16 22 22 H 1.48502 * 109.46782 * 173.64974 * 21 19 17 23 23 H 1.48494 * 109.47181 * 293.64643 * 21 19 17 24 24 H 1.48496 * 109.47157 * 53.65085 * 21 19 17 25 25 C 1.46872 * 109.27826 * 358.40443 * 16 15 13 26 26 C 1.44548 * 117.33742 * 187.07437 * 9 7 6 27 27 H 1.08993 * 109.64242 * 285.94827 * 26 9 7 28 28 C 1.38355 * 120.34498 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46602 * 270.01877 * 1 2 3 30 30 H 1.09001 * 109.46957 * 30.01278 * 1 2 3 31 31 H 1.08999 * 109.47136 * 150.01913 * 1 2 3 32 32 H 1.07998 * 119.46316 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.71658 * 180.28777 * 5 4 3 34 34 H 1.08998 * 108.98999 * 324.41117 * 10 9 7 35 35 H 1.09002 * 108.98854 * 83.14609 * 10 9 7 36 36 H 1.09002 * 109.05667 * 80.24606 * 11 10 9 37 37 H 1.08998 * 109.05509 * 199.21921 * 11 10 9 38 38 H 1.09007 * 109.95061 * 102.08540 * 15 13 12 39 39 H 1.08999 * 109.70676 * 341.12638 * 15 13 12 40 40 H 0.97001 * 120.00427 * 354.97029 * 20 19 17 41 41 H 1.08995 * 110.07139 * 137.28657 * 25 16 15 42 42 H 1.08993 * 110.07022 * 258.81951 * 25 16 15 43 43 H 1.07991 * 120.85830 * 0.04097 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5253 1.2108 -0.0005 5 6 4.2350 0.1014 0.0053 6 6 3.6054 -1.1437 -0.0002 7 6 4.4023 -2.3889 0.0002 8 8 3.9594 -3.3938 0.5212 9 7 5.6200 -2.4099 -0.5773 10 6 6.1584 -1.1466 -1.0416 11 6 7.1914 -1.3389 -2.1394 12 8 8.0322 -2.4437 -1.8751 13 6 7.4366 -3.7056 -1.6833 14 1 8.1925 -4.4195 -1.3564 15 6 6.8179 -4.2139 -2.9979 16 7 5.5203 -4.8182 -2.6737 17 6 4.6507 -5.3623 -3.5808 18 1 3.7402 -5.8332 -3.2407 19 6 4.9394 -5.3087 -4.9375 20 7 3.9616 -5.2497 -5.8166 21 14 6.7157 -5.3202 -5.5155 22 1 6.7535 -5.4108 -6.9973 23 1 7.3864 -4.0693 -5.0789 24 1 7.4193 -6.4895 -4.9300 25 6 5.3041 -4.7531 -1.2224 26 6 6.2823 -3.6903 -0.6835 27 1 6.6505 -3.9947 0.2961 28 6 2.2060 -1.1940 0.0005 29 1 -0.3632 0.0003 1.0277 30 1 -0.3633 0.8899 -0.5140 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6630 2.1275 -0.0004 33 1 5.3136 0.1559 0.0093 34 1 5.3432 -0.5332 -1.4253 35 1 6.6245 -0.6299 -0.2026 36 1 6.6777 -1.5014 -3.0870 37 1 7.8014 -0.4389 -2.2156 38 1 7.4701 -4.9601 -3.4518 39 1 6.6758 -3.3790 -3.6842 40 1 3.0399 -5.3172 -5.5221 41 1 4.2767 -4.4575 -1.0102 42 1 5.5166 -5.7211 -0.7688 43 1 1.6858 -2.1404 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083034661.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:32 Heat of formation + Delta-G solvation = 14.554433 kcal Electronic energy + Delta-G solvation = -27943.852457 eV Core-core repulsion = 24184.023521 eV Total energy + Delta-G solvation = -3759.828936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.70297 -41.18274 -39.73287 -37.95310 -36.58587 -34.86438 -34.54165 -33.28044 -32.04419 -29.86849 -29.62590 -28.38563 -26.49189 -25.56068 -24.86512 -23.67751 -22.69274 -21.71968 -20.53502 -19.61108 -18.73854 -18.65333 -18.13705 -17.54988 -17.30474 -17.09133 -16.31749 -16.21684 -15.90350 -15.73281 -15.34086 -15.25626 -14.88889 -14.72951 -14.50983 -14.22521 -14.04273 -13.75005 -13.65026 -13.51711 -13.23627 -13.03010 -12.95821 -12.77112 -12.43686 -12.17257 -11.99790 -11.81116 -11.44459 -11.13296 -10.92318 -10.75931 -10.51055 -10.46594 -9.94883 -9.75374 -9.20972 -8.78237 -5.46405 -0.42959 0.06358 1.36718 1.42422 1.47050 1.67121 1.70978 2.47439 2.54861 2.68394 2.92344 3.02882 3.27000 3.35541 3.44324 3.49955 3.66716 3.72736 3.73947 3.84691 3.92682 3.99633 4.10569 4.13512 4.23527 4.32888 4.47626 4.52094 4.60416 4.68056 4.76463 4.77062 4.82673 4.83545 4.89774 4.97033 5.08969 5.17372 5.39743 5.49948 5.53176 5.98756 5.99673 6.22027 6.73066 6.75507 6.86967 7.39606 8.02659 8.74103 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014640 B = 0.004932 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.070894 B = 5675.811964 C = 6432.281122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.140 4.140 3 C 0.120 3.880 4 N -0.493 5.493 5 C 0.106 3.894 6 C -0.198 4.198 7 C 0.554 3.446 8 O -0.560 6.560 9 N -0.584 5.584 10 C 0.055 3.945 11 C 0.046 3.954 12 O -0.360 6.360 13 C 0.101 3.899 14 H 0.152 0.848 15 C 0.081 3.919 16 N -0.622 5.622 17 C -0.331 4.331 18 H 0.038 0.962 19 C -0.070 4.070 20 N -0.943 5.943 21 Si 1.093 2.907 22 H -0.306 1.306 23 H -0.243 1.243 24 H -0.282 1.282 25 C 0.118 3.882 26 C 0.121 3.879 27 H 0.108 0.892 28 C -0.042 4.042 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.196 0.804 33 H 0.204 0.796 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.033 0.967 37 H 0.159 0.841 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.246 0.754 41 H 0.048 0.952 42 H 0.033 0.967 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 16.946 14.148 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.142 4.142 3 C -0.036 4.036 4 N -0.200 5.200 5 C -0.051 4.051 6 C -0.203 4.203 7 C 0.343 3.657 8 O -0.440 6.440 9 N -0.316 5.316 10 C -0.067 4.067 11 C -0.030 4.030 12 O -0.276 6.276 13 C 0.042 3.958 14 H 0.170 0.830 15 C -0.044 4.044 16 N -0.350 5.350 17 C -0.459 4.459 18 H 0.056 0.944 19 C -0.264 4.264 20 N -0.586 5.586 21 Si 0.919 3.081 22 H -0.234 1.234 23 H -0.167 1.167 24 H -0.209 1.209 25 C -0.008 4.008 26 C 0.016 3.984 27 H 0.125 0.875 28 C -0.069 4.069 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.213 0.787 33 H 0.220 0.780 34 H 0.119 0.881 35 H 0.137 0.863 36 H 0.052 0.948 37 H 0.176 0.824 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.558 17.320 13.034 22.150 hybrid contribution -2.603 -2.095 0.914 3.464 sum 1.954 15.225 13.948 20.741 Atomic orbital electron populations 1.20823 0.87440 1.04341 1.03979 1.21223 0.99578 0.92760 1.00651 1.23531 0.89830 0.98738 0.91538 1.67893 1.08800 1.30337 1.13005 1.24345 1.02794 0.85723 0.92232 1.20908 0.95332 0.94863 1.09241 1.18580 0.81063 0.88013 0.78034 1.90716 1.71183 1.36084 1.46048 1.46655 1.18019 1.08227 1.58661 1.22855 0.98972 0.84922 0.99920 1.22706 0.93659 0.90941 0.95703 1.86945 1.34818 1.14989 1.90887 1.22526 0.94955 0.86683 0.91614 0.83033 1.22634 0.87060 0.96472 0.98238 1.44587 1.18405 1.69373 1.02665 1.19790 1.00018 1.37163 0.88955 0.94388 1.27032 1.09021 0.98806 0.91574 1.71069 0.99780 1.50624 1.37140 0.83654 0.71551 0.78930 0.73935 1.23429 1.16738 1.20855 1.21919 0.99422 0.96086 0.83348 1.21562 0.93395 0.82962 1.00477 0.87482 1.21706 0.92554 0.99741 0.92877 0.89178 0.88510 0.91770 0.78678 0.78045 0.88077 0.86311 0.94836 0.82363 0.94595 0.94577 0.94422 0.93395 0.94971 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.03 71.24 0.71 -0.77 16 2 C -0.14 -2.83 5.89 -19.81 -0.12 -2.95 16 3 C 0.12 2.17 10.85 84.71 0.92 3.09 16 4 N -0.49 -10.52 10.35 -194.74 -2.01 -12.53 16 5 C 0.11 2.35 8.63 85.02 0.73 3.08 16 6 C -0.20 -5.67 5.48 -19.99 -0.11 -5.78 16 7 C 0.55 19.04 6.72 86.78 0.58 19.62 16 8 O -0.56 -23.25 14.16 -3.86 -0.05 -23.30 16 9 N -0.58 -17.98 3.09 -809.85 -2.50 -20.48 16 10 C 0.05 1.19 4.65 86.33 0.40 1.59 16 11 C 0.05 1.06 6.72 71.64 0.48 1.54 16 12 O -0.36 -9.78 10.24 -146.19 -1.50 -11.28 16 13 C 0.10 3.21 3.82 30.81 0.12 3.32 16 14 H 0.15 3.90 8.14 -2.39 -0.02 3.88 16 15 C 0.08 3.44 4.23 86.64 0.37 3.81 16 16 N -0.62 -31.74 3.37 -696.29 -2.35 -34.09 16 17 C -0.33 -20.24 10.41 84.03 0.87 -19.37 16 18 H 0.04 2.56 8.06 -2.91 -0.02 2.53 16 19 C -0.07 -4.26 5.45 84.86 0.46 -3.80 16 20 N -0.94 -61.89 13.70 21.65 0.30 -61.60 16 21 Si 1.09 53.69 24.83 68.60 1.70 55.39 16 22 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 23 H -0.24 -10.48 5.10 99.48 0.51 -9.97 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 C 0.12 5.24 6.29 86.71 0.55 5.78 16 26 C 0.12 4.05 3.33 45.66 0.15 4.20 16 27 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 28 C -0.04 -1.17 9.41 22.73 0.21 -0.95 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 0.88 8.09 -2.39 -0.02 0.86 16 31 H 0.06 1.00 8.09 -2.39 -0.02 0.99 16 32 H 0.20 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.20 3.32 4.08 -2.91 -0.01 3.31 16 34 H 0.10 2.18 4.93 -2.39 -0.01 2.16 16 35 H 0.12 1.65 6.81 -2.39 -0.02 1.64 16 36 H 0.03 0.97 6.84 -2.39 -0.02 0.95 16 37 H 0.16 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.04 1.55 4.82 -2.38 -0.01 1.54 16 39 H 0.04 1.66 4.88 -2.39 -0.01 1.65 16 40 H 0.25 16.39 8.73 -92.71 -0.81 15.58 16 41 H 0.05 2.42 5.15 -2.39 -0.01 2.41 16 42 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.13 3.80 7.98 -2.92 -0.02 3.78 16 Total: -1.00 -82.36 328.21 0.74 -81.62 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.81 Total: 13.84 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 6.34 Total: 12.42 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -6.56 Total: -128.70 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -1.55 Total: -34.58 kcal Atomic # 14 Polarization: 53.69 SS G_CDS: 1.70 Total: 55.39 kcal Total: -82.36 0.74 -81.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083034661.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.174 kcal (2) G-P(sol) polarization free energy of solvation -82.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds