Wall clock time and date at job start Tue Mar 31 2020 11:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38180 * 119.55357 * 2 1 4 4 C 1.39794 * 119.00074 * 180.02562 * 3 2 1 5 5 C 1.48146 * 120.92058 * 179.97438 * 4 3 2 6 6 O 1.21519 * 120.00017 * 330.98032 * 5 4 3 7 7 N 1.34778 * 120.00146 * 150.97726 * 5 4 3 8 8 C 1.44960 * 117.33610 * 6.93888 * 7 5 4 9 9 C 1.51954 * 111.94027 * 203.77639 * 8 7 5 10 10 O 1.41320 * 111.60839 * 319.69982 * 9 8 7 11 11 C 1.40845 * 118.30965 * 56.89316 * 10 9 8 12 12 H 1.09003 * 109.54820 * 187.74248 * 11 10 9 13 13 C 1.53929 * 110.46321 * 68.19385 * 11 10 9 14 14 N 1.46769 * 107.62216 * 221.67602 * 13 11 10 15 15 C 1.36938 * 125.36495 * 178.66007 * 14 13 11 16 16 H 1.07993 * 120.00179 * 176.19408 * 15 14 13 17 17 C 1.38811 * 119.99774 * 356.18793 * 15 14 13 18 18 N 1.31618 * 120.00224 * 211.92369 * 17 15 14 19 19 Si 1.86799 * 120.00000 * 31.92360 * 17 15 14 20 20 H 1.48505 * 109.47143 * 275.68064 * 19 17 15 21 21 H 1.48505 * 109.47361 * 35.67811 * 19 17 15 22 22 H 1.48495 * 109.47305 * 155.68238 * 19 17 15 23 23 C 1.46873 * 109.27490 * 358.39897 * 14 13 11 24 24 C 1.44543 * 117.33887 * 186.96068 * 7 5 4 25 25 H 1.09002 * 109.64638 * 285.93920 * 24 7 5 26 26 C 1.39833 * 118.15645 * 0.24946 * 4 3 2 27 27 C 1.38127 * 119.00271 * 359.52773 * 26 4 3 28 28 N 1.31793 * 119.55435 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46983 * 90.00336 * 1 2 3 30 30 H 1.09003 * 109.46849 * 210.00266 * 1 2 3 31 31 H 1.08996 * 109.46884 * 329.99793 * 1 2 3 32 32 H 1.08003 * 120.49677 * 359.97438 * 3 2 1 33 33 H 1.09003 * 108.99055 * 324.41124 * 8 7 5 34 34 H 1.09001 * 108.98656 * 83.13976 * 8 7 5 35 35 H 1.09003 * 109.05810 * 80.24628 * 9 8 7 36 36 H 1.09002 * 109.05559 * 199.21933 * 9 8 7 37 37 H 1.08999 * 109.95300 * 102.07886 * 13 11 10 38 38 H 1.08998 * 109.69625 * 341.12366 * 13 11 10 39 39 H 0.97003 * 119.99527 * 354.98405 * 18 17 15 40 40 H 1.08998 * 110.06880 * 137.29251 * 23 14 13 41 41 H 1.09002 * 110.06613 * 258.81422 * 23 14 13 42 42 H 1.07999 * 120.50002 * 179.72553 * 26 4 3 43 43 H 1.08001 * 119.55326 * 180.23112 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 -0.0005 5 6 4.3599 2.4520 -0.0011 6 8 3.8920 3.4506 -0.5117 7 7 5.5824 2.4941 0.5646 8 6 6.1494 1.2395 1.0185 9 6 7.1891 1.4471 2.1070 10 8 8.0061 2.5688 1.8393 11 6 7.3847 3.8197 1.6585 12 1 8.1235 4.5495 1.3273 13 6 6.7692 4.3110 2.9812 14 7 5.4572 4.8916 2.6721 15 6 4.5862 5.4153 3.5898 16 1 3.6673 5.8771 3.2600 17 6 4.8843 5.3526 4.9441 18 7 3.9144 5.2433 5.8271 19 14 6.6620 5.4234 5.5134 20 1 7.2565 4.0640 5.4502 21 1 7.4282 6.3401 4.6313 22 1 6.7147 5.9222 6.9110 23 6 5.2282 4.8281 1.2227 24 6 6.2211 3.7865 0.6699 25 1 6.5741 4.1018 -0.3120 26 6 4.2343 -0.0506 -0.0064 27 6 3.4741 -1.2039 -0.0015 28 7 2.1570 -1.1465 -0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5138 32 1 1.6493 2.1378 -0.0004 33 1 5.3498 0.6090 1.4074 34 1 6.6171 0.7352 0.1728 35 1 6.6817 1.5960 3.0601 36 1 7.8170 0.5586 2.1735 37 1 7.4114 5.0676 3.4319 38 1 6.6498 3.4708 3.6652 39 1 2.9891 5.2798 5.5381 40 1 4.2045 4.5138 1.0192 41 1 5.4177 5.8020 0.7711 42 1 5.3129 -0.1052 -0.0115 43 1 3.9654 -2.1657 -0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083228594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:32 Heat of formation + Delta-G solvation = 39.536272 kcal Electronic energy + Delta-G solvation = -27925.845782 eV Core-core repulsion = 24167.100140 eV Total energy + Delta-G solvation = -3758.745642 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.49846 -40.11807 -38.51759 -36.36560 -35.39451 -33.39403 -32.64202 -32.24561 -30.54360 -28.38256 -28.20057 -27.80276 -24.97884 -24.31750 -23.42358 -22.74218 -21.04604 -20.23969 -19.25755 -17.80191 -17.47183 -17.24015 -16.60720 -16.23518 -15.99181 -15.73976 -15.13433 -14.98605 -14.79726 -14.56193 -14.20114 -13.98052 -13.59772 -13.37034 -13.17021 -12.98235 -12.70146 -12.46423 -12.43915 -12.15249 -11.94628 -11.58235 -11.52687 -11.23399 -11.03590 -10.70799 -10.40280 -10.08309 -9.92053 -9.88542 -9.64923 -9.33810 -9.19810 -9.03324 -8.51724 -8.36815 -7.09383 -6.41604 -3.15642 0.64237 0.89570 2.63025 2.86003 3.38040 3.46784 3.59674 3.63968 3.76741 4.07451 4.12631 4.50470 4.54007 4.56335 4.68012 4.76513 4.85071 4.91160 4.98327 5.06688 5.12198 5.23705 5.28283 5.38520 5.42186 5.42404 5.52937 5.54847 5.59794 5.71105 5.75140 5.85092 5.87222 5.88739 6.17520 6.39052 6.44136 6.53512 6.60041 6.86641 7.17905 7.41288 7.70127 7.74886 8.06793 8.31198 9.01582 9.58069 10.22368 11.09597 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.004910 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.587986 B = 5701.111194 C = 6456.923987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.124 3.876 3 C -0.113 4.113 4 C -0.076 4.076 5 C 0.555 3.445 6 O -0.514 6.514 7 N -0.577 5.577 8 C 0.061 3.939 9 C 0.051 3.949 10 O -0.367 6.367 11 C 0.089 3.911 12 H 0.122 0.878 13 C 0.077 3.923 14 N -0.604 5.604 15 C -0.337 4.337 16 H 0.079 0.921 17 C -0.017 4.017 18 N -0.910 5.910 19 Si 1.062 2.938 20 H -0.293 1.293 21 H -0.292 1.292 22 H -0.298 1.298 23 C 0.122 3.878 24 C 0.111 3.889 25 H 0.083 0.917 26 C -0.176 4.176 27 C 0.098 3.902 28 N -0.474 5.474 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.044 0.956 38 H 0.048 0.952 39 H 0.264 0.736 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.161 0.839 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 -13.425 -12.898 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.013 4.013 3 C -0.134 4.134 4 C -0.087 4.087 5 C 0.342 3.658 6 O -0.390 6.390 7 N -0.310 5.310 8 C -0.062 4.062 9 C -0.026 4.026 10 O -0.284 6.284 11 C 0.030 3.970 12 H 0.139 0.861 13 C -0.048 4.048 14 N -0.333 5.333 15 C -0.463 4.463 16 H 0.097 0.903 17 C -0.218 4.218 18 N -0.550 5.550 19 Si 0.895 3.105 20 H -0.221 1.221 21 H -0.220 1.220 22 H -0.226 1.226 23 C -0.004 4.004 24 C 0.007 3.993 25 H 0.101 0.899 26 C -0.195 4.195 27 C -0.059 4.059 28 N -0.185 5.185 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.163 0.837 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.178 0.822 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.284 -13.683 -11.749 18.332 hybrid contribution -0.589 1.002 -1.250 1.707 sum 2.695 -12.681 -12.999 18.358 Atomic orbital electron populations 1.20738 0.88263 1.03892 1.03245 1.21287 0.97331 0.87724 0.94964 1.22104 0.93126 1.00207 0.97959 1.20342 0.94557 0.93762 1.00044 1.18257 0.80905 0.87689 0.78908 1.90755 1.69224 1.35067 1.43972 1.46511 1.17638 1.07389 1.59431 1.22565 0.98546 0.86543 0.98536 1.22403 0.93345 0.89671 0.97148 1.86903 1.34969 1.15275 1.91244 1.22551 0.94349 0.85336 0.94778 0.86088 1.22308 0.88857 0.97960 0.95696 1.44573 1.15869 1.70995 1.01833 1.19925 0.99911 1.39052 0.87443 0.90283 1.25633 1.05849 0.98984 0.91379 1.70918 1.00484 1.46789 1.36787 0.83907 0.75707 0.76325 0.74529 1.22087 1.22034 1.22561 1.21858 0.99153 0.94506 0.84899 1.21717 0.94990 0.83074 0.99547 0.89917 1.23221 1.03228 0.92523 1.00567 1.22733 0.89202 0.98298 0.95670 1.67370 1.10380 1.29473 1.11228 0.90223 0.90233 0.90294 0.83678 0.88122 0.90713 0.92002 0.87167 0.93917 0.93421 0.92598 0.90588 0.94955 0.82220 0.82096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.17 36.00 0.37 -0.61 16 2 C 0.12 1.54 6.78 -82.63 -0.56 0.98 16 3 C -0.11 -1.57 9.33 -39.02 -0.36 -1.93 16 4 C -0.08 -1.08 5.50 -104.65 -0.58 -1.65 16 5 C 0.55 9.36 6.75 -12.19 -0.08 9.28 16 6 O -0.51 -10.14 14.16 5.35 0.08 -10.06 16 7 N -0.58 -9.18 3.09 -169.83 -0.52 -9.70 16 8 C 0.06 0.73 4.65 -5.40 -0.03 0.71 16 9 C 0.05 0.67 6.72 36.63 0.25 0.91 16 10 O -0.37 -5.69 10.24 -34.44 -0.35 -6.04 16 11 C 0.09 1.53 3.82 -26.39 -0.10 1.43 16 12 H 0.12 1.82 8.14 -51.93 -0.42 1.39 16 13 C 0.08 1.70 4.49 -3.41 -0.02 1.69 16 14 N -0.60 -15.14 3.37 -171.44 -0.58 -15.72 16 15 C -0.34 -9.81 10.39 -15.06 -0.16 -9.97 16 16 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 17 C -0.02 -0.51 5.44 -17.43 -0.09 -0.60 16 18 N -0.91 -28.52 13.70 55.49 0.76 -27.76 16 19 Si 1.06 26.85 24.64 -169.99 -4.19 22.66 16 20 H -0.29 -7.00 6.34 56.52 0.36 -6.64 16 21 H -0.29 -7.03 6.43 56.52 0.36 -6.66 16 22 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 23 C 0.12 2.64 6.29 -3.23 -0.02 2.62 16 24 C 0.11 1.94 3.33 -68.51 -0.23 1.71 16 25 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 26 C -0.18 -1.90 7.55 -39.03 -0.29 -2.19 16 27 C 0.10 1.01 11.17 -17.59 -0.20 0.81 16 28 N -0.47 -5.87 10.25 -9.52 -0.10 -5.97 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.15 2.01 7.98 -52.48 -0.42 1.59 16 33 H 0.10 1.13 4.91 -51.93 -0.25 0.88 16 34 H 0.08 0.67 6.85 -51.93 -0.36 0.32 16 35 H 0.06 0.95 6.84 -51.93 -0.35 0.59 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.04 0.98 4.46 -51.93 -0.23 0.75 16 38 H 0.05 1.13 5.12 -51.93 -0.27 0.86 16 39 H 0.26 8.21 8.73 -40.82 -0.36 7.86 16 40 H 0.08 1.80 5.15 -51.93 -0.27 1.54 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.16 1.31 4.16 -52.49 -0.22 1.09 16 43 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 328.94 15.07 4.96 4.96 Total: -1.00 -35.46 328.94 -7.45 -42.92 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.40 Total: 1.54 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -2.10 Total: 3.18 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.44 Total: -59.15 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.28 Total: -16.10 kcal Atomic # 14 Polarization: 26.85 SS G_CDS: -4.19 Total: 22.66 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.46 -7.45 -42.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083228594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.453 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds