Wall clock time and date at job start Tue Mar 31 2020 11:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38180 * 119.55357 * 2 1 4 4 C 1.39794 * 119.00074 * 180.02562 * 3 2 1 5 5 C 1.48146 * 120.92058 * 179.97438 * 4 3 2 6 6 O 1.21519 * 120.00017 * 330.98032 * 5 4 3 7 7 N 1.34778 * 120.00146 * 150.97726 * 5 4 3 8 8 C 1.44960 * 117.33610 * 6.93888 * 7 5 4 9 9 C 1.51954 * 111.94027 * 203.77639 * 8 7 5 10 10 O 1.41320 * 111.60839 * 319.69982 * 9 8 7 11 11 C 1.40845 * 118.30965 * 56.89316 * 10 9 8 12 12 H 1.09003 * 109.54820 * 187.74248 * 11 10 9 13 13 C 1.53929 * 110.46321 * 68.19385 * 11 10 9 14 14 N 1.46769 * 107.62216 * 221.67602 * 13 11 10 15 15 C 1.36938 * 125.36495 * 178.66007 * 14 13 11 16 16 H 1.07993 * 120.00179 * 176.19408 * 15 14 13 17 17 C 1.38811 * 119.99774 * 356.18793 * 15 14 13 18 18 N 1.31618 * 120.00224 * 211.92369 * 17 15 14 19 19 Si 1.86799 * 120.00000 * 31.92360 * 17 15 14 20 20 H 1.48505 * 109.47143 * 275.68064 * 19 17 15 21 21 H 1.48505 * 109.47361 * 35.67811 * 19 17 15 22 22 H 1.48495 * 109.47305 * 155.68238 * 19 17 15 23 23 C 1.46873 * 109.27490 * 358.39897 * 14 13 11 24 24 C 1.44543 * 117.33887 * 186.96068 * 7 5 4 25 25 H 1.09002 * 109.64638 * 285.93920 * 24 7 5 26 26 C 1.39833 * 118.15645 * 0.24946 * 4 3 2 27 27 C 1.38127 * 119.00271 * 359.52773 * 26 4 3 28 28 N 1.31793 * 119.55435 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46983 * 90.00336 * 1 2 3 30 30 H 1.09003 * 109.46849 * 210.00266 * 1 2 3 31 31 H 1.08996 * 109.46884 * 329.99793 * 1 2 3 32 32 H 1.08003 * 120.49677 * 359.97438 * 3 2 1 33 33 H 1.09003 * 108.99055 * 324.41124 * 8 7 5 34 34 H 1.09001 * 108.98656 * 83.13976 * 8 7 5 35 35 H 1.09003 * 109.05810 * 80.24628 * 9 8 7 36 36 H 1.09002 * 109.05559 * 199.21933 * 9 8 7 37 37 H 1.08999 * 109.95300 * 102.07886 * 13 11 10 38 38 H 1.08998 * 109.69625 * 341.12366 * 13 11 10 39 39 H 0.97003 * 119.99527 * 354.98405 * 18 17 15 40 40 H 1.08998 * 110.06880 * 137.29251 * 23 14 13 41 41 H 1.09002 * 110.06613 * 258.81422 * 23 14 13 42 42 H 1.07999 * 120.50002 * 179.72553 * 26 4 3 43 43 H 1.08001 * 119.55326 * 180.23112 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 -0.0005 5 6 4.3599 2.4520 -0.0011 6 8 3.8920 3.4506 -0.5117 7 7 5.5824 2.4941 0.5646 8 6 6.1494 1.2395 1.0185 9 6 7.1891 1.4471 2.1070 10 8 8.0061 2.5688 1.8393 11 6 7.3847 3.8197 1.6585 12 1 8.1235 4.5495 1.3273 13 6 6.7692 4.3110 2.9812 14 7 5.4572 4.8916 2.6721 15 6 4.5862 5.4153 3.5898 16 1 3.6673 5.8771 3.2600 17 6 4.8843 5.3526 4.9441 18 7 3.9144 5.2433 5.8271 19 14 6.6620 5.4234 5.5134 20 1 7.2565 4.0640 5.4502 21 1 7.4282 6.3401 4.6313 22 1 6.7147 5.9222 6.9110 23 6 5.2282 4.8281 1.2227 24 6 6.2211 3.7865 0.6699 25 1 6.5741 4.1018 -0.3120 26 6 4.2343 -0.0506 -0.0064 27 6 3.4741 -1.2039 -0.0015 28 7 2.1570 -1.1465 -0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5138 32 1 1.6493 2.1378 -0.0004 33 1 5.3498 0.6090 1.4074 34 1 6.6171 0.7352 0.1728 35 1 6.6817 1.5960 3.0601 36 1 7.8170 0.5586 2.1735 37 1 7.4114 5.0676 3.4319 38 1 6.6498 3.4708 3.6652 39 1 2.9891 5.2798 5.5381 40 1 4.2045 4.5138 1.0192 41 1 5.4177 5.8020 0.7711 42 1 5.3129 -0.1052 -0.0115 43 1 3.9654 -2.1657 -0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083228594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:31 Heat of formation + Delta-G solvation = 12.086434 kcal Electronic energy + Delta-G solvation = -27927.036097 eV Core-core repulsion = 24167.100140 eV Total energy + Delta-G solvation = -3759.935956 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.69577 -41.18688 -39.77715 -37.96310 -36.61681 -34.90835 -33.94456 -33.45283 -32.08205 -29.84546 -29.69413 -28.69567 -26.54499 -25.53279 -24.85003 -23.72690 -22.68631 -21.66253 -20.56020 -19.56900 -18.78044 -18.65830 -17.77115 -17.34957 -17.27980 -16.96532 -16.35793 -16.26992 -16.01207 -15.75817 -15.43517 -15.41451 -15.17317 -14.90056 -14.57140 -14.27358 -14.08637 -13.67586 -13.50333 -13.25104 -13.16201 -13.07088 -12.89512 -12.81002 -12.47699 -12.20459 -11.94376 -11.75683 -11.45524 -11.30942 -10.97285 -10.84023 -10.57952 -10.37057 -9.98107 -9.74824 -9.20738 -8.80134 -5.45762 -0.37481 -0.00358 1.33567 1.40133 1.45369 1.64236 1.70908 2.44352 2.55555 2.69841 2.89677 2.99461 3.28151 3.33132 3.38467 3.47484 3.63645 3.69800 3.81588 3.92392 3.95077 4.05510 4.12176 4.25299 4.32056 4.40038 4.48097 4.52654 4.59707 4.65823 4.71192 4.76934 4.82483 4.83280 4.89127 4.93183 4.98379 5.10185 5.38340 5.50406 5.58033 5.96995 5.99085 6.21567 6.74449 6.82491 6.85539 7.39623 8.02918 8.72212 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.004910 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.587986 B = 5701.111194 C = 6456.923987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.118 3.882 3 C -0.139 4.139 4 C -0.098 4.098 5 C 0.547 3.453 6 O -0.558 6.558 7 N -0.581 5.581 8 C 0.052 3.948 9 C 0.044 3.956 10 O -0.361 6.361 11 C 0.104 3.896 12 H 0.152 0.848 13 C 0.070 3.930 14 N -0.621 5.621 15 C -0.335 4.335 16 H 0.039 0.961 17 C -0.069 4.069 18 N -0.940 5.940 19 Si 1.107 2.893 20 H -0.268 1.268 21 H -0.271 1.271 22 H -0.302 1.302 23 C 0.118 3.882 24 C 0.120 3.880 25 H 0.108 0.892 26 C -0.161 4.161 27 C 0.105 3.895 28 N -0.488 5.488 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.031 0.969 36 H 0.161 0.839 37 H 0.043 0.957 38 H 0.032 0.968 39 H 0.248 0.752 40 H 0.047 0.953 41 H 0.032 0.968 42 H 0.194 0.806 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.302 -16.552 -14.158 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.018 4.018 3 C -0.160 4.160 4 C -0.109 4.109 5 C 0.336 3.664 6 O -0.437 6.437 7 N -0.313 5.313 8 C -0.069 4.069 9 C -0.032 4.032 10 O -0.277 6.277 11 C 0.045 3.955 12 H 0.169 0.831 13 C -0.054 4.054 14 N -0.350 5.350 15 C -0.462 4.462 16 H 0.057 0.943 17 C -0.264 4.264 18 N -0.583 5.583 19 Si 0.933 3.067 20 H -0.194 1.194 21 H -0.197 1.197 22 H -0.230 1.230 23 C -0.008 4.008 24 C 0.015 3.985 25 H 0.125 0.875 26 C -0.180 4.180 27 C -0.052 4.052 28 N -0.198 5.198 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.145 0.855 33 H 0.126 0.874 34 H 0.140 0.860 35 H 0.049 0.951 36 H 0.178 0.822 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.211 0.789 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 6.733 -16.848 -13.044 22.345 hybrid contribution -1.777 1.922 -0.896 2.767 sum 4.956 -14.926 -13.940 21.015 Atomic orbital electron populations 1.20803 0.86704 1.04254 1.04287 1.21582 0.98541 0.87206 0.94498 1.22118 0.93616 1.00328 0.99963 1.20324 0.94498 0.93999 1.02074 1.18760 0.81169 0.88186 0.78268 1.90721 1.70124 1.36815 1.46037 1.46670 1.17486 1.08155 1.58971 1.22982 0.98738 0.85081 1.00107 1.22752 0.94193 0.90450 0.95839 1.86939 1.34968 1.14911 1.90918 1.22476 0.94463 0.87044 0.91499 0.83084 1.22482 0.87273 0.97100 0.98593 1.44549 1.16996 1.70756 1.02656 1.19762 0.99428 1.38289 0.88766 0.94339 1.27001 1.09115 0.98670 0.91627 1.71044 1.00081 1.49739 1.37398 0.83342 0.71264 0.77980 0.74101 1.19432 1.19734 1.22996 1.21911 0.99296 0.96203 0.83391 1.21562 0.93605 0.82817 1.00470 0.87477 1.23536 1.04781 0.90927 0.98789 1.23502 0.88538 0.99881 0.93314 1.67480 1.11690 1.29059 1.11589 0.88788 0.89498 0.90245 0.85508 0.87355 0.85994 0.95103 0.82155 0.93948 0.94981 0.94304 0.93460 0.95034 0.78946 0.77752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.92 10.17 71.24 0.72 -1.19 16 2 C 0.12 2.89 6.78 42.55 0.29 3.18 16 3 C -0.14 -4.01 9.33 22.63 0.21 -3.80 16 4 C -0.10 -2.73 5.50 -19.88 -0.11 -2.83 16 5 C 0.55 18.48 6.75 86.88 0.59 19.07 16 6 O -0.56 -23.06 14.16 -3.78 -0.05 -23.11 16 7 N -0.58 -17.36 3.09 -809.50 -2.50 -19.86 16 8 C 0.05 1.03 4.65 86.32 0.40 1.43 16 9 C 0.04 0.95 6.72 71.64 0.48 1.43 16 10 O -0.36 -9.53 10.24 -146.15 -1.50 -11.02 16 11 C 0.10 3.26 3.82 30.82 0.12 3.38 16 12 H 0.15 3.85 8.14 -2.39 -0.02 3.83 16 13 C 0.07 2.99 4.49 86.64 0.39 3.38 16 14 N -0.62 -31.71 3.37 -696.31 -2.35 -34.06 16 15 C -0.33 -20.43 10.39 84.03 0.87 -19.55 16 16 H 0.04 2.59 8.06 -2.91 -0.02 2.56 16 17 C -0.07 -4.21 5.44 84.86 0.46 -3.75 16 18 N -0.94 -61.42 13.70 21.65 0.30 -61.12 16 19 Si 1.11 54.27 24.64 68.60 1.69 55.96 16 20 H -0.27 -12.02 6.34 99.48 0.63 -11.39 16 21 H -0.27 -12.23 6.43 99.48 0.64 -11.59 16 22 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 23 C 0.12 5.22 6.29 86.70 0.55 5.77 16 24 C 0.12 3.98 3.33 45.66 0.15 4.13 16 25 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 26 C -0.16 -2.94 7.55 22.63 0.17 -2.77 16 27 C 0.10 1.76 11.17 84.67 0.95 2.71 16 28 N -0.49 -11.03 10.25 -184.04 -1.89 -12.92 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 32 H 0.13 3.95 7.98 -2.91 -0.02 3.92 16 33 H 0.11 2.01 4.91 -2.39 -0.01 2.00 16 34 H 0.12 1.36 6.85 -2.39 -0.02 1.34 16 35 H 0.03 0.87 6.84 -2.39 -0.02 0.85 16 36 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.04 1.84 4.46 -2.39 -0.01 1.83 16 38 H 0.03 1.48 5.12 -2.39 -0.01 1.47 16 39 H 0.25 16.41 8.73 -92.71 -0.81 15.60 16 40 H 0.05 2.39 5.15 -2.39 -0.01 2.38 16 41 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.19 2.08 4.16 -2.91 -0.01 2.07 16 43 H 0.21 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -83.58 328.94 0.81 -82.76 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.87 Total: 12.80 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 6.24 Total: 10.58 kcal Atomic # 7 Polarization: -121.53 SS G_CDS: -6.43 Total: -127.96 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.55 Total: -34.13 kcal Atomic # 14 Polarization: 54.27 SS G_CDS: 1.69 Total: 55.96 kcal Total: -83.58 0.81 -82.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083228594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.850 kcal (2) G-P(sol) polarization free energy of solvation -83.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds