Wall clock time and date at job start Tue Mar 31 2020 11:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99720 * 2 1 4 4 H 1.48499 * 109.47128 * 275.23292 * 3 2 1 5 5 H 1.48496 * 109.47367 * 155.22705 * 3 2 1 6 6 H 1.48505 * 109.47147 * 35.23023 * 3 2 1 7 7 C 1.38817 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99475 * 339.93567 * 7 2 1 9 9 N 1.36930 * 119.99887 * 159.93771 * 7 2 1 10 10 C 1.46617 * 119.89245 * 331.35158 * 9 7 2 11 11 C 1.53104 * 108.00994 * 237.30766 * 10 9 7 12 12 C 1.53005 * 109.44587 * 301.02015 * 11 10 9 13 13 H 1.08999 * 113.42658 * 275.04067 * 12 11 10 14 14 C 1.54657 * 110.83972 * 143.89210 * 12 11 10 15 15 N 1.47803 * 85.78984 * 270.23324 * 14 12 11 16 16 C 1.34783 * 135.01016 * 153.78929 * 15 14 12 17 17 O 1.21579 * 119.99887 * 180.02562 * 16 15 14 18 18 C 1.47512 * 119.99928 * 0.02562 * 16 15 14 19 19 C 1.36818 * 126.94130 * 179.97438 * 18 16 15 20 20 C 1.41262 * 103.84536 * 179.97438 * 19 18 16 21 21 C 1.50702 * 126.70297 * 180.02562 * 20 19 18 22 22 C 1.52995 * 117.50078 * 343.75112 * 21 20 19 23 23 C 1.52999 * 117.49985 * 275.08734 * 21 20 19 24 24 N 1.30127 * 106.59013 * 0.02562 * 20 19 18 25 25 O 1.20885 * 111.98127 * 359.71524 * 24 20 19 26 26 C 1.46818 * 89.97754 * 333.80323 * 15 14 12 27 27 H 1.08998 * 111.56425 * 274.48343 * 26 15 14 28 28 C 1.45678 * 119.89052 * 151.08102 * 9 7 2 29 29 H 0.96992 * 120.00615 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.75279 * 356.93140 * 10 9 7 31 31 H 1.09001 * 109.75891 * 117.62506 * 10 9 7 32 32 H 1.09000 * 109.47429 * 61.01594 * 11 10 9 33 33 H 1.09006 * 109.47328 * 181.03116 * 11 10 9 34 34 H 1.08997 * 113.81690 * 24.44909 * 14 12 11 35 35 H 1.08996 * 113.82067 * 156.01354 * 14 12 11 36 36 H 1.07999 * 128.08139 * 359.97438 * 19 18 16 37 37 H 1.09001 * 115.54707 * 129.42327 * 21 20 19 38 38 H 1.08994 * 117.50324 * 359.97438 * 22 21 20 39 39 H 1.09004 * 117.49982 * 145.01868 * 22 21 20 40 40 H 1.09005 * 117.49751 * 214.97868 * 23 21 20 41 41 H 1.08999 * 117.50185 * 0.02562 * 23 21 20 42 42 H 1.09002 * 108.71289 * 261.76828 * 28 9 7 43 43 H 1.08994 * 108.71611 * 19.78643 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3870 2.1103 -1.3942 5 1 3.5985 1.4110 0.5866 6 1 1.5072 2.6183 0.8077 7 6 2.0104 -1.2021 0.0005 8 1 1.5195 -2.1089 0.3218 9 7 3.3174 -1.2382 -0.4062 10 6 3.8044 -0.2637 -1.3875 11 6 4.3733 -1.0369 -2.5803 12 6 5.5053 -1.9489 -2.1029 13 1 6.4713 -1.4472 -2.0462 14 6 5.5058 -3.2819 -2.8872 15 7 4.6002 -3.7784 -1.8299 16 6 3.6458 -4.7276 -1.7606 17 8 3.0484 -4.9139 -0.7183 18 6 3.3261 -5.5402 -2.9494 19 6 2.3909 -6.5350 -3.0383 20 6 2.4925 -6.9759 -4.3765 21 6 1.6849 -8.0685 -5.0285 22 6 0.9303 -9.0327 -4.1111 23 6 2.1777 -9.5072 -4.8609 24 7 3.4196 -6.2544 -4.9360 25 8 3.8920 -5.4495 -4.1677 26 6 5.1710 -2.8089 -0.8866 27 1 6.0708 -3.1967 -0.4090 28 6 4.2209 -2.2409 0.1418 29 1 -0.4850 0.8399 -0.0004 30 1 2.9809 0.3694 -1.7179 31 1 4.5851 0.3513 -0.9399 32 1 3.5857 -1.6407 -3.0310 33 1 4.7598 -0.3338 -3.3182 34 1 5.0397 -3.2144 -3.8702 35 1 6.4748 -3.7806 -2.9070 36 1 1.7295 -6.8983 -2.2657 37 1 1.2157 -7.8044 -5.9763 38 1 1.0182 -8.8772 -3.0359 39 1 -0.0352 -9.4033 -4.4555 40 1 2.0322 -10.1898 -5.6982 41 1 3.0857 -9.6636 -4.2786 42 1 4.8005 -1.7873 0.9458 43 1 3.6283 -3.0555 0.5581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084693630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:09 Heat of formation + Delta-G solvation = 130.831875 kcal Electronic energy + Delta-G solvation = -27165.175774 eV Core-core repulsion = 23410.389007 eV Total energy + Delta-G solvation = -3754.786768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.03117 -40.70957 -38.04906 -37.83577 -35.61182 -33.42133 -32.26378 -31.75586 -31.18319 -29.28408 -27.30675 -24.83529 -24.46248 -23.71684 -23.15475 -22.44597 -21.88022 -21.24224 -19.84952 -18.47112 -17.78901 -17.48895 -16.74999 -16.32194 -16.01799 -15.52241 -15.48528 -15.18203 -14.70996 -13.96181 -13.86478 -13.73769 -13.64739 -13.34538 -12.87006 -12.60733 -12.35554 -12.25820 -12.02647 -11.89310 -11.82737 -11.44276 -11.37261 -11.20952 -10.93228 -10.76540 -10.72242 -10.39620 -10.01316 -9.97245 -9.77211 -9.68002 -9.49775 -9.42357 -8.70002 -8.43008 -6.91646 -5.88149 -3.25425 0.85939 1.91914 2.56064 3.04802 3.21824 3.33375 3.37849 3.50398 3.52969 3.79116 4.27493 4.45839 4.50047 4.56636 4.60520 4.78804 4.85452 4.94114 5.00280 5.13683 5.16549 5.26499 5.31551 5.39805 5.44921 5.51651 5.53104 5.63744 5.72018 5.74307 5.75953 5.82131 5.86641 5.94525 6.16061 6.27977 6.32691 6.56277 6.63248 6.75176 6.91573 7.76090 7.94753 8.06926 8.23433 8.42911 9.03560 9.78738 10.11864 11.27886 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018092 B = 0.003832 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.289659 B = 7304.864917 C = 8033.124646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.883 3.117 4 H -0.290 1.290 5 H -0.269 1.269 6 H -0.304 1.304 7 C -0.255 4.255 8 H 0.085 0.915 9 N -0.598 5.598 10 C 0.127 3.873 11 C -0.119 4.119 12 C -0.108 4.108 13 H 0.096 0.904 14 C 0.097 3.903 15 N -0.619 5.619 16 C 0.625 3.375 17 O -0.499 6.499 18 C -0.063 4.063 19 C -0.155 4.155 20 C 0.042 3.958 21 C -0.086 4.086 22 C -0.162 4.162 23 C -0.163 4.163 24 N -0.347 5.347 25 O 0.117 5.883 26 C 0.134 3.866 27 H 0.087 0.913 28 C 0.142 3.858 29 H 0.261 0.739 30 H 0.074 0.926 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.182 0.818 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.030 0.970 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.951 -13.649 -9.915 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.218 1.218 5 H -0.194 1.194 6 H -0.233 1.233 7 C -0.383 4.383 8 H 0.103 0.897 9 N -0.321 5.321 10 C 0.001 3.999 11 C -0.159 4.159 12 C -0.127 4.127 13 H 0.114 0.886 14 C -0.026 4.026 15 N -0.354 5.354 16 C 0.411 3.589 17 O -0.374 6.374 18 C -0.129 4.129 19 C -0.178 4.178 20 C -0.115 4.115 21 C -0.105 4.105 22 C -0.199 4.199 23 C -0.201 4.201 24 N -0.048 5.048 25 O 0.044 5.956 26 C 0.031 3.969 27 H 0.105 0.895 28 C 0.015 3.985 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.199 0.801 37 H 0.143 0.857 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.047 0.953 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.832 -13.790 -10.514 20.446 hybrid contribution -0.056 0.780 0.497 0.927 sum 10.776 -13.010 -10.017 19.640 Atomic orbital electron populations 1.69842 1.05741 1.26359 1.53290 1.25284 0.95210 0.97466 0.99662 0.86932 0.80217 0.84749 0.76734 1.21819 1.19404 1.23281 1.18955 0.84591 0.94735 1.40049 0.89708 1.43816 1.08425 1.33969 1.45875 1.21246 0.97591 0.91985 0.89081 1.21886 0.96575 0.98325 0.99096 1.22884 1.00142 0.94604 0.95075 0.88639 1.23706 0.93099 0.92459 0.93289 1.49666 1.35039 1.34183 1.16547 1.15982 0.80199 0.78144 0.84579 1.90895 1.50945 1.67225 1.28286 1.24394 0.99124 1.01336 0.88007 1.22757 1.00340 0.97247 0.97428 1.22609 0.97313 0.99569 0.92033 1.20099 1.02018 0.87485 1.00928 1.23083 0.96627 1.01391 0.98848 1.23042 0.98850 0.94871 1.03346 1.73663 1.11660 1.02977 1.16484 1.84996 1.49964 1.44126 1.16487 1.22552 0.95663 0.85657 0.93048 0.89542 1.20298 0.92351 0.93458 0.92362 0.92880 0.90757 0.95284 0.91383 0.92050 0.89559 0.89514 0.80078 0.85708 0.87954 0.87574 0.87846 0.88505 0.95283 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.53 13.97 55.49 0.78 -27.76 16 2 C 0.02 0.65 5.22 -17.43 -0.09 0.56 16 3 Si 0.88 22.40 24.38 -169.99 -4.14 18.25 16 4 H -0.29 -7.07 6.71 56.52 0.38 -6.69 16 5 H -0.27 -6.59 6.55 56.52 0.37 -6.22 16 6 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 7 C -0.25 -7.35 9.96 -15.06 -0.15 -7.50 16 8 H 0.09 2.72 8.02 -52.48 -0.42 2.30 16 9 N -0.60 -14.29 2.76 -174.88 -0.48 -14.77 16 10 C 0.13 2.68 4.15 -3.92 -0.02 2.66 16 11 C -0.12 -1.98 5.66 -26.67 -0.15 -2.14 16 12 C -0.11 -1.44 4.39 -89.97 -0.40 -1.84 16 13 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 14 C 0.10 1.16 7.38 -3.00 -0.02 1.14 16 15 N -0.62 -9.85 3.35 -175.06 -0.59 -10.44 16 16 C 0.63 11.27 7.98 -12.48 -0.10 11.17 16 17 O -0.50 -10.71 16.05 5.30 0.09 -10.63 16 18 C -0.06 -0.99 7.23 -36.32 -0.26 -1.25 16 19 C -0.16 -2.21 10.26 -38.95 -0.40 -2.61 16 20 C 0.04 0.56 6.94 -82.17 -0.57 -0.01 16 21 C -0.09 -0.86 6.33 -91.77 -0.58 -1.44 16 22 C -0.16 -1.29 10.05 -26.69 -0.27 -1.55 16 23 C -0.16 -1.29 10.24 -26.69 -0.27 -1.57 16 24 N -0.35 -5.07 12.04 33.52 0.40 -4.67 16 25 O 0.12 1.72 9.89 15.56 0.15 1.88 16 26 C 0.13 2.08 4.23 -69.43 -0.29 1.79 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 28 C 0.14 2.87 6.19 -5.45 -0.03 2.83 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.07 1.76 4.30 -51.93 -0.22 1.54 16 31 H 0.03 0.59 7.21 -51.93 -0.37 0.21 16 32 H 0.07 1.28 7.69 -51.93 -0.40 0.88 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.02 7.40 -51.93 -0.38 0.63 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.18 2.33 7.62 -52.49 -0.40 1.93 16 37 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.10 0.83 7.33 -51.93 -0.38 0.45 16 39 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 1.83 6.35 -51.93 -0.33 1.50 16 LS Contribution 346.53 15.07 5.22 5.22 Total: -1.00 -34.40 346.53 -8.09 -42.49 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.91 Total: 0.18 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -3.61 Total: 0.24 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.11 Total: -57.63 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.24 Total: -8.75 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.14 Total: 18.25 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.40 -8.09 -42.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084693630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.321 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds