Wall clock time and date at job start Tue Mar 31 2020 11:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 119.99543 * 2 1 4 4 H 1.48506 * 109.46658 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47370 * 299.99706 * 3 2 1 6 6 H 1.48499 * 109.47268 * 60.00304 * 3 2 1 7 7 C 1.38807 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99488 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00670 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00381 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47346 * 34.99660 * 10 9 7 12 12 C 1.53005 * 109.47017 * 274.99654 * 10 9 7 13 13 C 1.53001 * 109.47396 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46728 * 60.00250 * 13 12 10 15 15 C 1.52999 * 109.47250 * 300.00142 * 14 13 12 16 16 C 1.53001 * 109.47371 * 60.00252 * 15 14 13 17 17 H 1.08993 * 109.47265 * 59.99537 * 16 15 14 18 18 N 1.46501 * 109.47054 * 180.02562 * 16 15 14 19 19 C 1.34780 * 119.99474 * 274.99641 * 18 16 15 20 20 O 1.21727 * 120.00032 * 0.02562 * 19 18 16 21 21 C 1.46495 * 119.99783 * 180.02562 * 19 18 16 22 22 C 1.37778 * 125.85788 * 180.02562 * 21 19 18 23 23 C 1.39932 * 107.68377 * 180.02562 * 22 21 19 24 24 O 1.35121 * 145.13691 * 180.02562 * 23 22 21 25 25 C 1.34384 * 109.62632 * 179.97438 * 24 23 22 26 26 C 1.34465 * 109.44114 * 0.02562 * 25 24 23 27 27 C 1.39129 * 107.40882 * 359.97438 * 23 22 21 28 28 N 1.37113 * 108.11069 * 0.02562 * 27 23 22 29 29 H 0.96996 * 125.74736 * 180.26690 * 28 27 23 30 30 H 0.96993 * 119.99860 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99819 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47067 * 300.00176 * 12 10 9 33 33 H 1.09004 * 109.47077 * 60.00213 * 12 10 9 34 34 H 1.08994 * 109.47075 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.46967 * 300.00819 * 13 12 10 36 36 H 1.08995 * 109.47208 * 59.99904 * 14 13 12 37 37 H 1.09002 * 109.47355 * 180.02562 * 14 13 12 38 38 H 1.09009 * 109.46903 * 299.99793 * 15 14 13 39 39 H 1.09008 * 109.47275 * 180.02562 * 15 14 13 40 40 H 0.97002 * 120.00141 * 95.00260 * 18 16 15 41 41 H 1.07993 * 126.15567 * 0.02562 * 22 21 19 42 42 H 1.07992 * 125.27487 * 180.02562 * 25 24 23 43 43 H 1.08001 * 126.40763 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 1 2.9685 -3.5508 0.5885 12 6 2.4231 -4.0349 -1.4386 13 6 3.1887 -5.3596 -1.4386 14 6 2.3116 -6.4555 -0.8299 15 6 1.9466 -6.0774 0.6070 16 6 1.1810 -4.7527 0.6070 17 1 0.2708 -4.8590 0.0169 18 7 0.8321 -4.3903 1.9830 19 6 -0.2859 -4.8878 2.5479 20 8 -1.0054 -5.6385 1.9149 21 6 -0.6352 -4.5251 3.9236 22 6 -1.7432 -4.9612 4.6167 23 6 -1.7026 -4.3830 5.8903 24 8 -2.3293 -4.2835 7.0832 25 6 -1.6314 -3.4696 7.8933 26 6 -0.5400 -3.0233 7.2470 27 6 -0.5573 -3.5956 5.9537 28 7 0.0899 -3.6869 4.7484 29 1 0.9196 -3.2416 4.5155 30 1 -0.4849 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0016 32 1 1.5129 -4.1409 -2.0287 33 1 3.0484 -3.2544 -1.8721 34 1 3.4490 -5.6287 -2.4622 35 1 4.0990 -5.2532 -0.8485 36 1 1.4013 -6.5619 -1.4199 37 1 2.8571 -7.3992 -0.8295 38 1 2.8569 -5.9710 1.1971 39 1 1.3220 -6.8584 1.0408 40 1 1.4057 -3.7924 2.4874 41 1 -2.5057 -5.6290 4.2440 42 1 -1.9047 -3.2136 8.9062 43 1 0.2099 -2.3537 7.6419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085215934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:56 Heat of formation + Delta-G solvation = 24.306787 kcal Electronic energy + Delta-G solvation = -26563.452030 eV Core-core repulsion = 22804.045988 eV Total energy + Delta-G solvation = -3759.406042 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.90595 -40.16512 -38.92555 -37.59103 -34.12032 -33.89753 -32.37867 -31.22125 -30.62523 -29.64745 -28.33018 -27.45785 -23.96629 -23.69262 -21.86177 -21.53925 -21.13085 -20.67093 -20.06284 -19.42475 -18.30437 -17.29512 -16.95343 -16.24745 -16.19235 -15.36495 -15.13284 -14.81908 -14.45579 -14.06940 -13.87510 -13.67559 -13.61000 -13.44114 -13.13384 -13.01499 -12.85816 -12.68436 -12.18958 -12.13951 -11.74865 -11.14838 -10.99547 -10.91313 -10.81305 -10.64157 -10.38602 -10.19953 -10.09073 -9.95617 -9.75721 -9.69735 -9.00326 -8.75899 -8.58992 -7.84727 -7.06395 -5.85022 -3.15542 1.04293 2.25713 2.50305 2.68216 2.91595 3.35181 3.41027 3.43168 3.43950 3.53325 4.48539 4.55808 4.75513 4.97857 5.01658 5.10422 5.22968 5.26774 5.43514 5.45762 5.48464 5.53069 5.65727 5.75330 5.80884 5.83187 5.89305 5.92654 6.06875 6.08568 6.25719 6.30244 6.39597 6.41989 6.42534 6.52685 6.59956 6.76387 6.82422 7.00995 7.13743 7.31478 7.60730 7.74011 8.31711 8.36320 9.43703 9.99693 10.34810 11.36682 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009667 B = 0.004494 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.766803 B = 6228.762225 C = 8521.353489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.723 5.723 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.141 3.859 17 H 0.089 0.911 18 N -0.703 5.703 19 C 0.590 3.410 20 O -0.530 6.530 21 C 0.019 3.981 22 C -0.087 4.087 23 C -0.040 4.040 24 O -0.170 6.170 25 C 0.005 3.995 26 C -0.199 4.199 27 C 0.009 3.991 28 N -0.527 5.527 29 H 0.422 0.578 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.398 0.602 41 H 0.159 0.841 42 H 0.210 0.790 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.743 -10.717 11.114 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.363 5.363 10 C 0.062 3.938 11 H 0.068 0.932 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.164 4.164 16 C 0.036 3.964 17 H 0.107 0.893 18 N -0.351 5.351 19 C 0.376 3.624 20 O -0.407 6.407 21 C -0.094 4.094 22 C -0.115 4.115 23 C -0.092 4.092 24 O -0.068 6.068 25 C -0.063 4.063 26 C -0.221 4.221 27 C -0.105 4.105 28 N -0.130 5.130 29 H 0.261 0.739 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.232 0.768 41 H 0.177 0.823 42 H 0.227 0.773 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.210 -11.179 10.639 15.590 hybrid contribution 0.997 1.866 0.187 2.124 sum 3.207 -9.313 10.826 14.636 Atomic orbital electron populations 1.69682 1.05080 1.25634 1.57075 1.24748 0.95433 0.97641 1.02794 0.86177 0.78754 0.84321 0.77247 1.20582 1.21808 1.21966 1.19232 0.90920 0.83970 1.43339 0.91145 1.42439 1.05849 0.99466 1.88592 1.20470 0.93810 0.85732 0.93755 0.93217 1.22217 1.00039 0.95584 0.99550 1.21586 0.98503 0.95659 1.00052 1.21470 0.99992 0.98057 0.95651 1.21884 0.99994 0.97137 0.97343 1.21383 0.99360 0.94224 0.81388 0.89343 1.45775 1.24712 1.48836 1.15814 1.16794 0.81280 0.80709 0.83663 1.90845 1.50904 1.36615 1.62304 1.20393 0.95595 1.00775 0.92659 1.19842 0.99177 1.04406 0.88038 1.19281 0.94751 1.06302 0.88868 1.84005 1.45886 1.56656 1.20255 1.23985 0.91796 0.94071 0.96460 1.20562 1.02523 1.07592 0.91404 1.19007 0.96581 1.05047 0.89849 1.41204 1.22581 1.39703 1.09546 0.73897 0.93473 0.78083 0.92333 0.91551 0.92605 0.92412 0.91833 0.92290 0.92043 0.91705 0.76804 0.82319 0.77329 0.82980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.26 13.06 55.49 0.72 -26.53 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.90 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 8 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 9 N -0.72 -16.74 4.95 -53.43 -0.26 -17.01 16 10 C 0.17 3.12 2.29 -67.93 -0.16 2.96 16 11 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 12 C -0.13 -2.22 5.50 -26.73 -0.15 -2.36 16 13 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 14 C -0.11 -1.41 5.92 -26.73 -0.16 -1.57 16 15 C -0.12 -1.69 5.49 -26.73 -0.15 -1.83 16 16 C 0.14 2.30 1.98 -67.93 -0.13 2.17 16 17 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 18 N -0.70 -11.08 4.90 -55.17 -0.27 -11.35 16 19 C 0.59 10.00 7.74 -12.93 -0.10 9.90 16 20 O -0.53 -10.37 16.53 5.16 0.09 -10.28 16 21 C 0.02 0.29 7.03 -81.86 -0.58 -0.28 16 22 C -0.09 -1.33 10.58 -39.12 -0.41 -1.75 16 23 C -0.04 -0.60 8.20 -38.62 -0.32 -0.92 16 24 O -0.17 -2.25 10.68 3.19 0.03 -2.22 16 25 C 0.00 0.04 12.02 29.40 0.35 0.40 16 26 C -0.20 -2.18 10.89 -39.70 -0.43 -2.61 16 27 C 0.01 0.12 8.11 -83.95 -0.68 -0.56 16 28 N -0.53 -7.18 6.08 -7.04 -0.04 -7.22 16 29 H 0.42 4.86 8.16 -40.82 -0.33 4.53 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.39 9.95 7.80 -40.82 -0.32 9.64 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 40 H 0.40 5.80 7.69 -40.82 -0.31 5.48 16 41 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 42 H 0.21 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 358.93 15.07 5.41 5.41 Total: -1.00 -32.06 358.93 -8.64 -40.70 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -5.97 Total: 16.93 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -3.31 Total: -4.99 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.15 Total: -62.11 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.12 Total: -12.50 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.06 -8.64 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085215934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.007 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds