Wall clock time and date at job start Tue Mar 31 2020 11:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 119.99543 * 2 1 4 4 H 1.48506 * 109.46658 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47370 * 299.99706 * 3 2 1 6 6 H 1.48499 * 109.47268 * 60.00304 * 3 2 1 7 7 C 1.38807 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99488 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00670 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00381 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47346 * 34.99660 * 10 9 7 12 12 C 1.53005 * 109.47017 * 274.99654 * 10 9 7 13 13 C 1.53001 * 109.47396 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46728 * 60.00250 * 13 12 10 15 15 C 1.52999 * 109.47250 * 300.00142 * 14 13 12 16 16 C 1.53001 * 109.47371 * 60.00252 * 15 14 13 17 17 H 1.08993 * 109.47265 * 59.99537 * 16 15 14 18 18 N 1.46501 * 109.47054 * 180.02562 * 16 15 14 19 19 C 1.34780 * 119.99474 * 274.99641 * 18 16 15 20 20 O 1.21727 * 120.00032 * 0.02562 * 19 18 16 21 21 C 1.46495 * 119.99783 * 180.02562 * 19 18 16 22 22 C 1.37778 * 125.85788 * 180.02562 * 21 19 18 23 23 C 1.39932 * 107.68377 * 180.02562 * 22 21 19 24 24 O 1.35121 * 145.13691 * 180.02562 * 23 22 21 25 25 C 1.34384 * 109.62632 * 179.97438 * 24 23 22 26 26 C 1.34465 * 109.44114 * 0.02562 * 25 24 23 27 27 C 1.39129 * 107.40882 * 359.97438 * 23 22 21 28 28 N 1.37113 * 108.11069 * 0.02562 * 27 23 22 29 29 H 0.96996 * 125.74736 * 180.26690 * 28 27 23 30 30 H 0.96993 * 119.99860 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99819 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47067 * 300.00176 * 12 10 9 33 33 H 1.09004 * 109.47077 * 60.00213 * 12 10 9 34 34 H 1.08994 * 109.47075 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.46967 * 300.00819 * 13 12 10 36 36 H 1.08995 * 109.47208 * 59.99904 * 14 13 12 37 37 H 1.09002 * 109.47355 * 180.02562 * 14 13 12 38 38 H 1.09009 * 109.46903 * 299.99793 * 15 14 13 39 39 H 1.09008 * 109.47275 * 180.02562 * 15 14 13 40 40 H 0.97002 * 120.00141 * 95.00260 * 18 16 15 41 41 H 1.07993 * 126.15567 * 0.02562 * 22 21 19 42 42 H 1.07992 * 125.27487 * 180.02562 * 25 24 23 43 43 H 1.08001 * 126.40763 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 1 2.9685 -3.5508 0.5885 12 6 2.4231 -4.0349 -1.4386 13 6 3.1887 -5.3596 -1.4386 14 6 2.3116 -6.4555 -0.8299 15 6 1.9466 -6.0774 0.6070 16 6 1.1810 -4.7527 0.6070 17 1 0.2708 -4.8590 0.0169 18 7 0.8321 -4.3903 1.9830 19 6 -0.2859 -4.8878 2.5479 20 8 -1.0054 -5.6385 1.9149 21 6 -0.6352 -4.5251 3.9236 22 6 -1.7432 -4.9612 4.6167 23 6 -1.7026 -4.3830 5.8903 24 8 -2.3293 -4.2835 7.0832 25 6 -1.6314 -3.4696 7.8933 26 6 -0.5400 -3.0233 7.2470 27 6 -0.5573 -3.5956 5.9537 28 7 0.0899 -3.6869 4.7484 29 1 0.9196 -3.2416 4.5155 30 1 -0.4849 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0016 32 1 1.5129 -4.1409 -2.0287 33 1 3.0484 -3.2544 -1.8721 34 1 3.4490 -5.6287 -2.4622 35 1 4.0990 -5.2532 -0.8485 36 1 1.4013 -6.5619 -1.4199 37 1 2.8571 -7.3992 -0.8295 38 1 2.8569 -5.9710 1.1971 39 1 1.3220 -6.8584 1.0408 40 1 1.4057 -3.7924 2.4874 41 1 -2.5057 -5.6290 4.2440 42 1 -1.9047 -3.2136 8.9062 43 1 0.2099 -2.3537 7.6419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085215934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:55 Heat of formation + Delta-G solvation = 2.372915 kcal Electronic energy + Delta-G solvation = -26564.403154 eV Core-core repulsion = 22804.045988 eV Total energy + Delta-G solvation = -3760.357166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.90699 -41.41384 -40.11381 -38.92944 -35.83782 -35.26724 -33.32450 -33.02143 -31.73998 -30.87063 -29.71362 -28.75974 -25.70650 -24.95369 -23.06214 -22.63657 -22.48587 -21.71620 -21.33941 -20.66571 -19.48776 -19.05532 -18.09068 -17.54249 -17.26633 -16.76356 -16.47760 -16.12379 -15.91363 -15.43930 -15.33527 -14.87531 -14.81287 -14.63248 -14.50356 -14.31960 -14.08220 -13.67801 -13.60050 -13.53417 -12.93630 -12.87728 -12.78349 -12.23269 -12.18697 -12.04123 -12.02353 -11.69581 -11.44774 -11.35640 -11.09318 -11.05835 -10.87691 -10.10519 -9.65933 -9.02182 -8.88523 -7.93548 -5.22801 -0.04878 1.20711 1.45715 1.47450 1.49068 1.56368 1.69066 1.80171 2.23397 2.30745 2.54661 3.40178 3.60508 3.64407 3.74006 3.83431 3.96298 4.11842 4.25188 4.29611 4.31120 4.42452 4.45425 4.51832 4.58467 4.68462 4.71455 4.75904 4.94432 5.00454 5.02121 5.12168 5.24208 5.29316 5.30421 5.42591 5.44508 5.49238 5.52743 5.56351 5.66600 6.12985 6.25965 6.29057 6.46924 7.04262 7.33012 8.06778 8.30676 9.29583 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009667 B = 0.004494 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.766803 B = 6228.762225 C = 8521.353489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.073 4.073 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.301 1.301 6 H -0.297 1.297 7 C -0.229 4.229 8 H 0.081 0.919 9 N -0.733 5.733 10 C 0.173 3.827 11 H 0.061 0.939 12 C -0.128 4.128 13 C -0.110 4.110 14 C -0.110 4.110 15 C -0.116 4.116 16 C 0.148 3.852 17 H 0.059 0.941 18 N -0.697 5.697 19 C 0.590 3.410 20 O -0.564 6.564 21 C -0.005 4.005 22 C -0.093 4.093 23 C -0.074 4.074 24 O -0.184 6.184 25 C 0.030 3.970 26 C -0.218 4.218 27 C 0.009 3.991 28 N -0.521 5.521 29 H 0.430 0.570 30 H 0.247 0.753 31 H 0.368 0.632 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.404 0.596 41 H 0.160 0.840 42 H 0.263 0.737 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.925 -11.075 12.892 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.266 4.266 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.229 1.229 6 H -0.225 1.225 7 C -0.361 4.361 8 H 0.099 0.901 9 N -0.372 5.372 10 C 0.064 3.936 11 H 0.079 0.921 12 C -0.169 4.169 13 C -0.148 4.148 14 C -0.148 4.148 15 C -0.155 4.155 16 C 0.043 3.957 17 H 0.077 0.923 18 N -0.346 5.346 19 C 0.377 3.623 20 O -0.444 6.444 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.125 4.125 24 O -0.082 6.082 25 C -0.037 4.037 26 C -0.239 4.239 27 C -0.106 4.106 28 N -0.125 5.125 29 H 0.270 0.730 30 H 0.056 0.944 31 H 0.200 0.800 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.239 0.761 41 H 0.177 0.823 42 H 0.278 0.722 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.475 -11.567 12.408 17.544 hybrid contribution 0.300 1.941 -0.251 1.980 sum 4.775 -9.627 12.157 16.226 Atomic orbital electron populations 1.69853 1.06737 1.25653 1.59858 1.25480 0.96077 1.00854 1.04161 0.85168 0.78501 0.80389 0.76261 1.18638 1.22853 1.22504 1.19618 0.91427 0.84774 1.40276 0.90096 1.42616 1.05188 1.00783 1.88576 1.20682 0.93802 0.84137 0.94993 0.92136 1.22093 0.99590 0.97538 0.97687 1.21520 0.98374 0.93288 1.01612 1.21479 0.99929 0.99095 0.94338 1.21827 1.00083 0.94864 0.98686 1.21278 0.98106 0.95257 0.81093 0.92311 1.45720 1.24556 1.48689 1.15587 1.16966 0.80971 0.80185 0.84136 1.90811 1.51936 1.38308 1.63341 1.20105 0.96654 1.02640 0.92392 1.19989 0.99121 1.04274 0.88756 1.19362 0.95986 1.07642 0.89534 1.84016 1.46580 1.57636 1.19968 1.25109 0.90199 0.90966 0.97386 1.21021 1.04072 1.08710 0.90080 1.19599 0.95960 1.04465 0.90569 1.41127 1.22684 1.39282 1.09387 0.72960 0.94389 0.80050 0.93999 0.93072 0.90851 0.90907 0.92691 0.89382 0.90181 0.92198 0.76070 0.82265 0.72174 0.80193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.71 13.06 21.65 0.28 -58.42 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.97 44.69 29.55 68.60 2.03 46.72 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.23 -11.83 9.93 84.03 0.83 -11.00 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.73 -34.51 4.95 -322.94 -1.60 -36.11 16 10 C 0.17 6.16 2.29 44.99 0.10 6.27 16 11 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 12 C -0.13 -4.20 5.50 30.60 0.17 -4.03 16 13 C -0.11 -2.59 5.92 30.59 0.18 -2.41 16 14 C -0.11 -2.49 5.92 30.59 0.18 -2.30 16 15 C -0.12 -2.97 5.49 30.59 0.17 -2.80 16 16 C 0.15 4.85 1.98 44.99 0.09 4.94 16 17 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16 18 N -0.70 -22.43 4.90 -446.65 -2.19 -24.62 16 19 C 0.59 20.87 7.74 86.39 0.67 21.54 16 20 O -0.56 -23.24 16.53 -4.44 -0.07 -23.31 16 21 C -0.01 -0.17 7.03 40.19 0.28 0.12 16 22 C -0.09 -2.98 10.58 22.57 0.24 -2.74 16 23 C -0.07 -2.21 8.20 22.89 0.19 -2.02 16 24 O -0.18 -4.60 10.68 -11.51 -0.12 -4.72 16 25 C 0.03 0.49 12.02 66.96 0.80 1.29 16 26 C -0.22 -4.17 10.89 22.19 0.24 -3.93 16 27 C 0.01 0.23 8.11 39.32 0.32 0.55 16 28 N -0.52 -14.22 6.08 -176.19 -1.07 -15.29 16 29 H 0.43 9.83 8.16 -92.71 -0.76 9.07 16 30 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.37 19.79 7.80 -92.71 -0.72 19.07 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.40 11.83 7.69 -92.71 -0.71 11.12 16 41 H 0.16 4.81 8.06 -2.91 -0.02 4.78 16 42 H 0.26 1.10 8.06 -2.91 -0.02 1.08 16 43 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -71.97 358.93 1.06 -70.91 By element: Atomic # 1 Polarization: 46.11 SS G_CDS: -1.13 Total: 44.98 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 4.94 Total: -0.12 kcal Atomic # 7 Polarization: -129.87 SS G_CDS: -4.58 Total: -134.45 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.20 Total: -28.04 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.97 1.06 -70.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085215934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.281 kcal (2) G-P(sol) polarization free energy of solvation -71.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds