Wall clock time and date at job start Tue Mar 31 2020 11:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00410 * 2 1 4 4 H 1.48495 * 109.47200 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46672 * 300.00154 * 3 2 1 6 6 H 1.48495 * 109.46664 * 59.99574 * 3 2 1 7 7 C 1.38817 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00087 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99613 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99925 * 180.02562 * 9 7 2 11 11 H 1.09011 * 110.66880 * 36.77865 * 10 9 7 12 12 C 1.54888 * 110.75561 * 273.55053 * 10 9 7 13 13 C 1.54268 * 104.19568 * 203.55896 * 12 10 9 14 14 C 1.53877 * 106.59907 * 23.60221 * 13 12 10 15 15 H 1.08996 * 110.03750 * 240.67258 * 14 13 12 16 16 C 1.52999 * 110.02896 * 119.28892 * 14 13 12 17 17 N 1.46492 * 109.47328 * 66.45535 * 16 14 13 18 18 C 1.34781 * 120.00439 * 180.02562 * 17 16 14 19 19 O 1.21733 * 119.99597 * 359.97438 * 18 17 16 20 20 C 1.46485 * 120.00380 * 179.72447 * 18 17 16 21 21 C 1.37783 * 125.86105 * 180.29822 * 20 18 17 22 22 C 1.39930 * 107.68744 * 179.97438 * 21 20 18 23 23 O 1.35122 * 145.13944 * 180.02562 * 22 21 20 24 24 C 1.34378 * 109.62426 * 179.97438 * 23 22 21 25 25 C 1.34457 * 109.44798 * 359.97438 * 24 23 22 26 26 C 1.39132 * 107.40772 * 359.97438 * 22 21 20 27 27 N 1.37114 * 108.10764 * 359.77352 * 26 22 21 28 28 H 0.96999 * 125.74098 * 180.22876 * 27 26 22 29 29 C 1.54271 * 106.59764 * 0.02562 * 14 13 12 30 30 H 0.97001 * 119.99904 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00298 * 0.02562 * 9 7 2 32 32 H 1.09002 * 110.48844 * 84.87640 * 12 10 9 33 33 H 1.08998 * 110.59805 * 322.28895 * 12 10 9 34 34 H 1.09006 * 110.03098 * 264.32386 * 13 12 10 35 35 H 1.08994 * 110.03721 * 142.89177 * 13 12 10 36 36 H 1.09009 * 109.46941 * 306.45326 * 16 14 13 37 37 H 1.08998 * 109.47458 * 186.46095 * 16 14 13 38 38 H 0.97000 * 120.00247 * 359.97438 * 17 16 14 39 39 H 1.08003 * 126.15342 * 359.96172 * 21 20 18 40 40 H 1.08000 * 125.27519 * 179.97438 * 24 23 22 41 41 H 1.08004 * 126.41128 * 180.02562 * 25 24 23 42 42 H 1.08999 * 110.48547 * 95.06528 * 29 14 13 43 43 H 1.08995 * 110.48393 * 217.71139 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 1 2.9578 -3.5817 0.6101 12 6 2.4100 -4.0874 -1.4461 13 6 2.5942 -5.6161 -1.3513 14 6 1.7969 -6.0794 -0.1194 15 1 2.4652 -6.5467 0.6038 16 6 0.7080 -7.0678 -0.5413 17 7 1.3304 -8.2969 -1.0392 18 6 0.5603 -9.3158 -1.4699 19 8 -0.6526 -9.2148 -1.4446 20 6 1.1828 -10.5425 -1.9734 21 6 0.5151 -11.6509 -2.4466 22 6 1.4751 -12.5950 -2.8276 23 8 1.6739 -13.8289 -3.3412 24 6 2.9922 -14.0755 -3.4256 25 6 3.6767 -13.0113 -2.9711 26 6 2.7264 -12.0402 -2.5782 27 7 2.5402 -10.7839 -2.0614 28 1 3.2432 -10.1691 -1.7994 29 6 1.1556 -4.8161 0.4910 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 3.3349 -3.6112 -1.7715 33 1 1.5957 -3.8429 -2.1282 34 1 3.6496 -5.8580 -1.2256 35 1 2.2053 -6.0955 -2.2496 36 1 0.0995 -6.6237 -1.3292 37 1 0.0773 -7.3016 0.3164 38 1 2.2968 -8.3773 -1.0597 39 1 -0.5564 -11.7698 -2.5115 40 1 3.4334 -14.9873 -3.8004 41 1 4.7512 -12.9158 -2.9164 42 1 0.1372 -4.6896 0.1236 43 1 1.1653 -4.8713 1.5795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086709651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:48 Heat of formation + Delta-G solvation = 27.044587 kcal Electronic energy + Delta-G solvation = -25086.527394 eV Core-core repulsion = 21327.240072 eV Total energy + Delta-G solvation = -3759.287322 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.28778 -40.49153 -39.04692 -38.05744 -35.10157 -33.46767 -32.74165 -31.14396 -30.73646 -29.44111 -28.50612 -27.24802 -24.92080 -23.29473 -23.00872 -22.04160 -21.07545 -20.57377 -19.72955 -19.46996 -18.69753 -17.47396 -17.10166 -16.63750 -16.47988 -15.88420 -15.64331 -15.12591 -15.01512 -14.59361 -13.97854 -13.92521 -13.79746 -13.76441 -13.32350 -13.18110 -12.92682 -12.79094 -12.25110 -12.12216 -11.90864 -11.19335 -10.95111 -10.82685 -10.68185 -10.61210 -10.46302 -10.41694 -10.32649 -10.16172 -9.86532 -9.68898 -9.34284 -8.99060 -8.90310 -8.24548 -6.96479 -5.78519 -3.07285 0.62746 1.87392 2.10927 2.29723 2.48355 2.97338 3.04508 3.41548 3.46984 3.49442 4.17456 4.34704 4.56178 4.57459 4.72674 4.84780 4.89450 4.97577 5.10731 5.12700 5.39247 5.46143 5.48339 5.61835 5.65641 5.72399 5.82673 5.89895 5.91900 5.93666 5.97770 6.09870 6.18243 6.26988 6.28050 6.40076 6.52165 6.65763 6.76254 6.82244 6.88226 7.07649 7.18208 7.69084 7.85150 8.40342 9.51307 10.09903 10.43874 11.44146 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.037372 B = 0.001957 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.045672 B =14302.087269 C =14768.794645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.052 0.948 12 C -0.143 4.143 13 C -0.122 4.122 14 C -0.101 4.101 15 H 0.074 0.926 16 C 0.126 3.874 17 N -0.723 5.723 18 C 0.586 3.414 19 O -0.519 6.519 20 C 0.008 3.992 21 C -0.078 4.078 22 C -0.040 4.040 23 O -0.168 6.168 24 C 0.013 3.987 25 C -0.203 4.203 26 C 0.011 3.989 27 N -0.532 5.532 28 H 0.420 0.580 29 C -0.121 4.121 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.395 0.605 39 H 0.162 0.838 40 H 0.213 0.787 41 H 0.154 0.846 42 H 0.071 0.929 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.526 -28.439 -4.796 30.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.067 3.933 11 H 0.070 0.930 12 C -0.184 4.184 13 C -0.160 4.160 14 C -0.120 4.120 15 H 0.092 0.908 16 C 0.004 3.996 17 N -0.374 5.374 18 C 0.372 3.628 19 O -0.395 6.395 20 C -0.105 4.105 21 C -0.106 4.106 22 C -0.092 4.092 23 O -0.066 6.066 24 C -0.055 4.055 25 C -0.225 4.225 26 C -0.102 4.102 27 N -0.136 5.136 28 H 0.258 0.742 29 C -0.160 4.160 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.228 0.772 39 H 0.179 0.821 40 H 0.229 0.771 41 H 0.172 0.828 42 H 0.090 0.910 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.584 -28.234 -4.777 29.622 hybrid contribution 1.352 1.203 0.025 1.810 sum 8.936 -27.031 -4.753 28.864 Atomic orbital electron populations 1.69670 1.05097 1.25571 1.57678 1.24759 0.95524 0.97729 1.03027 0.86130 0.78752 0.84191 0.77195 1.20591 1.21882 1.21871 1.19283 0.91011 0.84138 1.42612 0.91159 1.42387 1.05775 0.99759 1.88179 1.21150 0.93873 0.85614 0.92701 0.92976 1.23073 1.01380 0.92527 1.01446 1.22230 0.98854 0.98183 0.96723 1.21976 0.96386 0.95756 0.97925 0.90802 1.21664 0.95716 0.82630 0.99622 1.45932 1.09755 1.16361 1.65351 1.16825 0.86634 0.81361 0.77932 1.90908 1.12768 1.80730 1.55073 1.20319 0.81214 0.97461 1.11471 1.19926 0.98639 0.88582 1.03437 1.19283 0.95325 0.86263 1.08338 1.84038 1.25747 1.29327 1.67447 1.24078 0.79471 1.00184 1.01794 1.20571 0.99514 0.92702 1.09677 1.19040 0.96314 0.88190 1.06665 1.41141 1.06527 1.12952 1.53024 0.74172 1.22572 1.00198 0.93328 0.99931 0.93530 0.78166 0.92597 0.91732 0.92507 0.92389 0.90590 0.90970 0.77178 0.82078 0.77101 0.82825 0.91037 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.56 9.98 -15.06 -0.15 -6.71 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.72 5.26 -51.49 -0.27 -17.99 16 10 C 0.18 3.34 3.53 -65.93 -0.23 3.11 16 11 H 0.05 1.00 8.12 -51.92 -0.42 0.58 16 12 C -0.14 -2.40 6.51 -25.07 -0.16 -2.56 16 13 C -0.12 -1.47 6.13 -25.61 -0.16 -1.63 16 14 C -0.10 -1.16 2.98 -89.50 -0.27 -1.43 16 15 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 16 C 0.13 1.44 4.70 -4.05 -0.02 1.42 16 17 N -0.72 -6.95 5.29 -61.68 -0.33 -7.27 16 18 C 0.59 6.92 7.78 -12.94 -0.10 6.82 16 19 O -0.52 -8.08 16.87 5.16 0.09 -7.99 16 20 C 0.01 0.08 7.03 -81.86 -0.58 -0.50 16 21 C -0.08 -0.85 10.58 -39.11 -0.41 -1.27 16 22 C -0.04 -0.43 8.20 -38.62 -0.32 -0.75 16 23 O -0.17 -1.60 10.68 3.20 0.03 -1.57 16 24 C 0.01 0.08 12.02 29.40 0.35 0.43 16 25 C -0.20 -1.34 10.89 -39.70 -0.43 -1.78 16 26 C 0.01 0.10 8.11 -83.95 -0.68 -0.58 16 27 N -0.53 -4.23 6.08 -7.04 -0.04 -4.28 16 28 H 0.42 2.04 8.16 -40.82 -0.33 1.71 16 29 C -0.12 -1.83 5.97 -25.06 -0.15 -1.98 16 30 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.38 10.08 7.73 -40.82 -0.32 9.77 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.67 7.58 -51.93 -0.39 0.28 16 36 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.39 2.67 7.40 -40.82 -0.30 2.36 16 39 H 0.16 1.63 8.06 -52.48 -0.42 1.20 16 40 H 0.21 0.28 8.06 -52.49 -0.42 -0.14 16 41 H 0.15 0.61 8.06 -52.48 -0.42 0.19 16 42 H 0.07 1.14 7.74 -51.93 -0.40 0.74 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -34.27 362.04 -8.70 -42.97 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.94 Total: 8.70 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -3.40 Total: -7.91 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.08 Total: -56.88 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.12 Total: -9.56 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.27 -8.70 -42.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086709651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.014 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds