Wall clock time and date at job start Tue Mar 31 2020 11:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00410 * 2 1 4 4 H 1.48495 * 109.47200 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46672 * 300.00154 * 3 2 1 6 6 H 1.48495 * 109.46664 * 59.99574 * 3 2 1 7 7 C 1.38817 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00087 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99613 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99925 * 180.02562 * 9 7 2 11 11 H 1.09011 * 110.66880 * 36.77865 * 10 9 7 12 12 C 1.54888 * 110.75561 * 273.55053 * 10 9 7 13 13 C 1.54268 * 104.19568 * 203.55896 * 12 10 9 14 14 C 1.53877 * 106.59907 * 23.60221 * 13 12 10 15 15 H 1.08996 * 110.03750 * 240.67258 * 14 13 12 16 16 C 1.52999 * 110.02896 * 119.28892 * 14 13 12 17 17 N 1.46492 * 109.47328 * 66.45535 * 16 14 13 18 18 C 1.34781 * 120.00439 * 180.02562 * 17 16 14 19 19 O 1.21733 * 119.99597 * 359.97438 * 18 17 16 20 20 C 1.46485 * 120.00380 * 179.72447 * 18 17 16 21 21 C 1.37783 * 125.86105 * 180.29822 * 20 18 17 22 22 C 1.39930 * 107.68744 * 179.97438 * 21 20 18 23 23 O 1.35122 * 145.13944 * 180.02562 * 22 21 20 24 24 C 1.34378 * 109.62426 * 179.97438 * 23 22 21 25 25 C 1.34457 * 109.44798 * 359.97438 * 24 23 22 26 26 C 1.39132 * 107.40772 * 359.97438 * 22 21 20 27 27 N 1.37114 * 108.10764 * 359.77352 * 26 22 21 28 28 H 0.96999 * 125.74098 * 180.22876 * 27 26 22 29 29 C 1.54271 * 106.59764 * 0.02562 * 14 13 12 30 30 H 0.97001 * 119.99904 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00298 * 0.02562 * 9 7 2 32 32 H 1.09002 * 110.48844 * 84.87640 * 12 10 9 33 33 H 1.08998 * 110.59805 * 322.28895 * 12 10 9 34 34 H 1.09006 * 110.03098 * 264.32386 * 13 12 10 35 35 H 1.08994 * 110.03721 * 142.89177 * 13 12 10 36 36 H 1.09009 * 109.46941 * 306.45326 * 16 14 13 37 37 H 1.08998 * 109.47458 * 186.46095 * 16 14 13 38 38 H 0.97000 * 120.00247 * 359.97438 * 17 16 14 39 39 H 1.08003 * 126.15342 * 359.96172 * 21 20 18 40 40 H 1.08000 * 125.27519 * 179.97438 * 24 23 22 41 41 H 1.08004 * 126.41128 * 180.02562 * 25 24 23 42 42 H 1.08999 * 110.48547 * 95.06528 * 29 14 13 43 43 H 1.08995 * 110.48393 * 217.71139 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 1 2.9578 -3.5817 0.6101 12 6 2.4100 -4.0874 -1.4461 13 6 2.5942 -5.6161 -1.3513 14 6 1.7969 -6.0794 -0.1194 15 1 2.4652 -6.5467 0.6038 16 6 0.7080 -7.0678 -0.5413 17 7 1.3304 -8.2969 -1.0392 18 6 0.5603 -9.3158 -1.4699 19 8 -0.6526 -9.2148 -1.4446 20 6 1.1828 -10.5425 -1.9734 21 6 0.5151 -11.6509 -2.4466 22 6 1.4751 -12.5950 -2.8276 23 8 1.6739 -13.8289 -3.3412 24 6 2.9922 -14.0755 -3.4256 25 6 3.6767 -13.0113 -2.9711 26 6 2.7264 -12.0402 -2.5782 27 7 2.5402 -10.7839 -2.0614 28 1 3.2432 -10.1691 -1.7994 29 6 1.1556 -4.8161 0.4910 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 3.3349 -3.6112 -1.7715 33 1 1.5957 -3.8429 -2.1282 34 1 3.6496 -5.8580 -1.2256 35 1 2.2053 -6.0955 -2.2496 36 1 0.0995 -6.6237 -1.3292 37 1 0.0773 -7.3016 0.3164 38 1 2.2968 -8.3773 -1.0597 39 1 -0.5564 -11.7698 -2.5115 40 1 3.4334 -14.9873 -3.8004 41 1 4.7512 -12.9158 -2.9164 42 1 0.1372 -4.6896 0.1236 43 1 1.1653 -4.8713 1.5795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086709651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:47 Heat of formation + Delta-G solvation = 2.705012 kcal Electronic energy + Delta-G solvation = -25087.582837 eV Core-core repulsion = 21327.240072 eV Total energy + Delta-G solvation = -3760.342765 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.91386 -41.32178 -39.94419 -39.20625 -36.41817 -35.07916 -33.32955 -32.65685 -31.69485 -30.58403 -29.42951 -28.59225 -26.13341 -24.97566 -23.95749 -22.69130 -21.73544 -21.59821 -20.95673 -20.59827 -19.45278 -19.08771 -18.11319 -17.45214 -17.27964 -16.84657 -16.73372 -16.45986 -16.12686 -15.71690 -15.36096 -15.12333 -14.73788 -14.53308 -14.49439 -14.27970 -13.94184 -13.65835 -13.60223 -13.35191 -12.98220 -12.78055 -12.70106 -12.37303 -12.09314 -11.99826 -11.80660 -11.67493 -11.56856 -11.35090 -11.23041 -11.07569 -10.90712 -10.27099 -9.66083 -8.97975 -8.89369 -7.94368 -5.22343 -0.08076 1.19465 1.46545 1.47202 1.49119 1.57137 1.69165 1.74098 2.18497 2.26992 2.56240 3.38075 3.59497 3.62736 3.72230 3.78293 3.81025 3.96456 4.29462 4.30855 4.37446 4.47165 4.48972 4.62088 4.63824 4.69922 4.76669 4.77848 4.78720 4.89449 5.03310 5.08762 5.11387 5.17445 5.23948 5.42323 5.44699 5.50107 5.53692 5.54829 5.64524 6.14539 6.28172 6.28859 6.45040 6.99594 7.33855 8.13039 8.33956 9.29563 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.037372 B = 0.001957 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.045672 B =14302.087269 C =14768.794645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.235 4.235 8 H 0.077 0.923 9 N -0.737 5.737 10 C 0.164 3.836 11 H 0.054 0.946 12 C -0.140 4.140 13 C -0.109 4.109 14 C -0.083 4.083 15 H 0.106 0.894 16 C 0.132 3.868 17 N -0.706 5.706 18 C 0.590 3.410 19 O -0.565 6.565 20 C -0.003 4.003 21 C -0.095 4.095 22 C -0.078 4.078 23 O -0.188 6.188 24 C 0.026 3.974 25 C -0.213 4.213 26 C 0.015 3.985 27 N -0.516 5.516 28 H 0.436 0.564 29 C -0.116 4.116 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.413 0.587 39 H 0.155 0.845 40 H 0.258 0.742 41 H 0.184 0.816 42 H 0.055 0.945 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.984 -30.592 -4.947 33.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.367 4.367 8 H 0.095 0.905 9 N -0.376 5.376 10 C 0.055 3.945 11 H 0.072 0.928 12 C -0.180 4.180 13 C -0.147 4.147 14 C -0.103 4.103 15 H 0.124 0.876 16 C 0.009 3.991 17 N -0.357 5.357 18 C 0.377 3.623 19 O -0.444 6.444 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.129 4.129 23 O -0.087 6.087 24 C -0.040 4.040 25 C -0.234 4.234 26 C -0.100 4.100 27 N -0.122 5.122 28 H 0.277 0.723 29 C -0.155 4.155 30 H 0.058 0.942 31 H 0.203 0.797 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.249 0.751 39 H 0.173 0.827 40 H 0.273 0.727 41 H 0.202 0.798 42 H 0.074 0.926 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.145 -30.411 -4.921 32.761 hybrid contribution 0.345 1.717 0.032 1.751 sum 11.490 -28.695 -4.889 31.294 Atomic orbital electron populations 1.69830 1.06655 1.25853 1.59945 1.25578 0.96377 1.01161 1.04176 0.85091 0.78333 0.79960 0.76517 1.18834 1.22346 1.22170 1.19681 0.91454 0.85294 1.40321 0.90518 1.42628 1.05401 1.01194 1.88364 1.21476 0.94164 0.84564 0.94286 0.92848 1.22902 0.99947 0.96194 0.98973 1.22167 1.00980 0.94239 0.97337 1.21840 0.96296 0.93991 0.98131 0.87576 1.21461 0.95593 0.83105 0.98927 1.45680 1.10538 1.15144 1.64339 1.16963 0.86105 0.81893 0.77330 1.90884 1.14785 1.81628 1.57120 1.19930 0.82255 0.96764 1.12647 1.20044 0.98858 0.89475 1.03901 1.19437 0.96042 0.87247 1.10208 1.84034 1.27859 1.28976 1.67795 1.25106 0.78001 1.01375 0.99567 1.21010 1.00737 0.91891 1.09789 1.19513 0.96552 0.88353 1.05557 1.41013 1.05952 1.12970 1.52223 0.72302 1.22476 0.98903 0.93646 1.00494 0.94164 0.79725 0.93192 0.94365 0.89334 0.91481 0.92550 0.91317 0.75075 0.82731 0.72662 0.79847 0.92602 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 2 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 3 Si 0.97 46.28 29.55 68.60 2.03 48.30 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 7 C -0.24 -13.01 9.98 84.03 0.84 -12.17 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -36.92 5.26 -316.80 -1.67 -38.58 16 10 C 0.16 6.09 3.53 46.29 0.16 6.25 16 11 H 0.05 1.98 8.12 -2.38 -0.02 1.96 16 12 C -0.14 -4.55 6.51 31.67 0.21 -4.35 16 13 C -0.11 -2.31 6.13 31.32 0.19 -2.12 16 14 C -0.08 -1.69 2.98 -10.07 -0.03 -1.72 16 15 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 16 C 0.13 2.84 4.70 86.38 0.41 3.24 16 17 N -0.71 -12.16 5.29 -467.25 -2.47 -14.63 16 18 C 0.59 13.66 7.78 86.39 0.67 14.33 16 19 O -0.57 -18.10 16.87 -4.45 -0.08 -18.17 16 20 C 0.00 -0.07 7.03 40.19 0.28 0.22 16 21 C -0.09 -2.13 10.58 22.57 0.24 -1.89 16 22 C -0.08 -1.63 8.20 22.89 0.19 -1.45 16 23 O -0.19 -3.36 10.68 -11.46 -0.12 -3.49 16 24 C 0.03 0.23 12.02 66.95 0.80 1.04 16 25 C -0.21 -2.10 10.89 22.19 0.24 -1.86 16 26 C 0.01 0.24 8.11 39.32 0.32 0.56 16 27 N -0.52 -7.13 6.08 -176.20 -1.07 -8.21 16 28 H 0.44 2.85 8.16 -92.71 -0.76 2.09 16 29 C -0.12 -3.42 5.97 31.68 0.19 -3.23 16 30 H 0.25 15.00 8.31 -92.71 -0.77 14.22 16 31 H 0.37 20.22 7.73 -92.71 -0.72 19.50 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.07 1.35 7.58 -2.39 -0.02 1.33 16 36 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.41 4.12 7.40 -92.71 -0.69 3.44 16 39 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.26 -0.50 8.06 -2.91 -0.02 -0.53 16 41 H 0.18 0.62 8.06 -2.91 -0.02 0.59 16 42 H 0.06 1.82 7.74 -2.39 -0.02 1.80 16 43 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -77.95 362.04 0.99 -76.96 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -1.09 Total: 25.07 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 5.18 Total: -7.36 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -4.92 Total: -121.32 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.20 Total: -21.66 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -77.95 0.99 -76.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086709651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.667 kcal (2) G-P(sol) polarization free energy of solvation -77.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds