Wall clock time and date at job start Tue Mar 31 2020 11:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53764 * 112.06872 * 2 1 4 4 N 1.47332 * 106.42052 * 141.00730 * 3 2 1 5 5 C 1.36938 * 126.77224 * 148.65376 * 4 3 2 6 6 H 1.08005 * 119.99887 * 0.05079 * 5 4 3 7 7 C 1.38814 * 120.00264 * 180.02562 * 5 4 3 8 8 N 1.31615 * 119.99737 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00029 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47161 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47113 * 120.00354 * 9 7 5 12 12 H 1.48502 * 109.46938 * 240.00118 * 9 7 5 13 13 C 1.47203 * 106.52883 * 328.67570 * 4 3 2 14 14 C 1.53768 * 106.45218 * 31.33693 * 13 4 3 15 15 H 1.08995 * 112.06397 * 218.97451 * 14 13 4 16 16 C 1.54308 * 109.07811 * 94.26508 * 14 13 4 17 17 N 1.49981 * 103.81352 * 224.35918 * 16 14 13 18 18 C 1.34775 * 127.21459 * 219.20739 * 17 16 14 19 19 O 1.21535 * 119.99787 * 173.23063 * 18 17 16 20 20 C 1.47977 * 120.00345 * 353.23353 * 18 17 16 21 21 C 1.39915 * 120.91150 * 340.05639 * 20 18 17 22 22 C 1.38017 * 119.00857 * 179.72633 * 21 20 18 23 23 N 1.31991 * 120.88944 * 0.55886 * 22 21 20 24 24 O 1.41599 * 118.98694 * 179.73504 * 23 22 21 25 25 C 1.31989 * 122.02611 * 359.71354 * 23 22 21 26 26 C 1.38015 * 120.88993 * 359.97438 * 25 23 22 27 27 C 1.48112 * 104.93758 * 38.70289 * 17 16 14 28 28 H 1.09010 * 109.46592 * 301.81893 * 1 2 3 29 29 H 1.08989 * 109.47594 * 61.82103 * 1 2 3 30 30 H 1.09000 * 109.47184 * 181.82925 * 1 2 3 31 31 H 1.08996 * 110.06595 * 260.23852 * 3 2 1 32 32 H 1.09001 * 110.06341 * 21.70945 * 3 2 1 33 33 H 0.97004 * 119.99906 * 179.97438 * 8 7 5 34 34 H 1.09003 * 110.07082 * 272.07721 * 13 4 3 35 35 H 1.08993 * 110.07315 * 150.59884 * 13 4 3 36 36 H 1.09004 * 110.38931 * 342.54743 * 16 14 13 37 37 H 1.09000 * 110.39000 * 104.93065 * 16 14 13 38 38 H 1.07999 * 120.49652 * 359.97438 * 21 20 18 39 39 H 1.08002 * 119.55495 * 180.27426 * 22 21 20 40 40 H 1.08005 * 119.55627 * 180.02562 * 25 23 22 41 41 H 1.08002 * 120.49633 * 179.97438 * 26 25 23 42 42 H 1.08994 * 110.38989 * 201.90733 * 27 17 16 43 43 H 1.09000 * 110.39200 * 79.51930 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1077 1.4250 0.0000 4 7 3.2821 1.3983 0.8892 5 6 4.4151 2.1586 0.7739 6 1 4.5092 2.8683 -0.0348 7 6 5.4426 2.0176 1.6966 8 7 5.3279 1.1527 2.6820 9 14 6.9879 3.0553 1.5396 10 1 6.8697 3.9431 0.3551 11 1 7.1563 3.8805 2.7626 12 1 8.1663 2.1666 1.3758 13 6 2.9991 0.3930 1.9266 14 6 2.1157 -0.6781 1.2657 15 1 1.3366 -1.0380 1.9376 16 6 3.0121 -1.8236 0.7505 17 7 2.4712 -2.1139 -0.6179 18 6 2.3204 -3.3223 -1.1954 19 8 1.7533 -3.4176 -2.2661 20 6 2.8452 -4.5330 -0.5258 21 6 3.8346 -4.4380 0.4590 22 6 4.2917 -5.5922 1.0621 23 7 3.8161 -6.7731 0.7133 24 8 4.3180 -7.9316 1.3544 25 6 2.8869 -6.9072 -0.2144 26 6 2.3695 -5.8047 -0.8636 27 6 2.1309 -0.7878 -1.1831 28 1 -0.3633 0.5419 0.8733 29 1 -0.3634 0.4852 -0.9057 30 1 -0.3633 -1.0271 0.0328 31 1 2.4090 1.7063 -1.0090 32 1 1.3666 2.1289 0.3787 33 1 6.0461 1.0539 3.3266 34 1 2.4679 0.8541 2.7594 35 1 3.9290 -0.0539 2.2780 36 1 4.0491 -1.4942 0.6850 37 1 2.9295 -2.6931 1.4025 38 1 4.2318 -3.4755 0.7458 39 1 5.0520 -5.5288 1.8265 40 1 2.5260 -7.8930 -0.4684 41 1 1.6095 -5.9218 -1.6221 42 1 1.3965 -0.8925 -1.9817 43 1 3.0278 -0.2913 -1.5535 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091456359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:11 Heat of formation + Delta-G solvation = 76.687304 kcal Electronic energy + Delta-G solvation = -27141.284531 eV Core-core repulsion = 23384.149879 eV Total energy + Delta-G solvation = -3757.134652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.68072 -40.20771 -38.53802 -35.23431 -34.70870 -33.04336 -32.12946 -30.98460 -30.29225 -30.03289 -27.04878 -26.14348 -25.50029 -24.69858 -24.29033 -22.67460 -20.44585 -20.23725 -18.83813 -17.94869 -17.71165 -17.07507 -16.89673 -16.09110 -15.66036 -15.58110 -15.38565 -14.84258 -14.73555 -14.23691 -13.97342 -13.76820 -13.45537 -13.07071 -12.88724 -12.65855 -12.46344 -12.13888 -11.89124 -11.84741 -11.45599 -11.30587 -11.07434 -10.95194 -10.93765 -10.34243 -10.26099 -10.14967 -10.11226 -9.95688 -9.91195 -9.71986 -9.54569 -8.91107 -8.84345 -8.66630 -7.06087 -5.82811 -3.27356 -0.06419 0.29254 2.30439 2.35354 2.69995 3.11395 3.28644 3.35764 3.37263 3.93230 4.14930 4.17594 4.23965 4.33535 4.51980 4.69968 4.80687 5.02461 5.09503 5.12569 5.29744 5.35600 5.37434 5.40896 5.46419 5.51610 5.59557 5.78788 5.82209 5.89129 5.98334 6.11001 6.16751 6.20422 6.28786 6.46386 6.55096 6.60600 6.71413 6.82257 7.19795 7.42674 7.44875 7.61826 7.90472 8.18819 9.03334 9.63481 10.29871 11.18879 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013538 B = 0.004138 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.790365 B = 6765.434221 C = 8127.074328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.089 4.089 3 C 0.143 3.857 4 N -0.595 5.595 5 C -0.219 4.219 6 H 0.080 0.920 7 C -0.009 4.009 8 N -0.923 5.923 9 Si 0.915 3.085 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.290 1.290 13 C 0.138 3.862 14 C -0.118 4.118 15 H 0.079 0.921 16 C 0.096 3.904 17 N -0.608 5.608 18 C 0.574 3.426 19 O -0.537 6.537 20 C -0.083 4.083 21 C -0.100 4.100 22 C 0.072 3.928 23 N -0.108 5.108 24 O -0.544 6.544 25 C 0.066 3.934 26 C -0.069 4.069 27 C 0.126 3.874 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.023 0.977 33 H 0.254 0.746 34 H 0.011 0.989 35 H 0.129 0.871 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.183 0.817 39 H 0.190 0.810 40 H 0.188 0.812 41 H 0.173 0.827 42 H 0.078 0.922 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 -7.310 -5.225 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 C 0.015 3.985 4 N -0.319 5.319 5 C -0.347 4.347 6 H 0.098 0.902 7 C -0.205 4.205 8 N -0.572 5.572 9 Si 0.745 3.255 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.217 1.217 13 C 0.012 3.988 14 C -0.138 4.138 15 H 0.098 0.902 16 C -0.025 4.025 17 N -0.340 5.340 18 C 0.361 3.639 19 O -0.416 6.416 20 C -0.094 4.094 21 C -0.119 4.119 22 C -0.074 4.074 23 N 0.214 4.786 24 O -0.601 6.601 25 C -0.080 4.080 26 C -0.088 4.088 27 C 0.005 3.995 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.029 0.971 35 H 0.146 0.854 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.200 0.800 39 H 0.207 0.793 40 H 0.205 0.795 41 H 0.191 0.809 42 H 0.097 0.903 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.811 -7.710 -5.561 12.304 hybrid contribution 0.818 0.435 0.169 0.942 sum -6.992 -7.275 -5.392 11.441 Atomic orbital electron populations 1.21618 0.93541 1.01174 1.01789 1.22319 0.94961 0.97385 0.94456 1.21407 0.90102 0.91979 0.94970 1.44534 1.14623 1.44231 1.28477 1.19144 0.91697 1.14341 1.09482 0.90222 1.24738 0.98760 0.99762 0.97203 1.69550 1.32833 1.38006 1.16764 0.85990 0.82733 0.79344 0.77390 1.20521 1.21671 1.21681 1.21997 0.99371 0.87829 0.89566 1.23214 0.97721 0.96418 0.96491 0.90242 1.23482 0.99666 0.98169 0.81186 1.49469 1.61148 1.05331 1.18049 1.17449 0.79989 0.81644 0.84788 1.90799 1.43150 1.85641 1.21982 1.20611 0.97226 0.94927 0.96682 1.22760 0.95243 1.00389 0.93508 1.22719 1.00330 0.83079 1.01229 1.43355 1.12656 1.09351 1.13195 1.97669 1.77938 1.16034 1.68429 1.22631 0.91882 1.02195 0.91245 1.21917 0.99084 0.89458 0.98362 1.22516 1.00473 0.80490 0.96066 0.92191 0.92638 0.93109 0.93649 0.95903 0.93535 0.97095 0.85403 0.88454 0.90189 0.80004 0.79301 0.79540 0.80937 0.90337 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 8.60 37.16 0.32 -1.21 16 2 C -0.09 -1.30 1.08 -152.32 -0.16 -1.46 16 3 C 0.14 2.53 6.18 -3.19 -0.02 2.51 16 4 N -0.60 -13.05 3.39 -171.06 -0.58 -13.64 16 5 C -0.22 -5.40 10.34 -15.06 -0.16 -5.55 16 6 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 7 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 8 N -0.92 -23.74 10.08 55.49 0.56 -23.18 16 9 Si 0.91 20.29 29.55 -169.99 -5.02 15.27 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 13 C 0.14 2.79 5.55 -3.26 -0.02 2.77 16 14 C -0.12 -1.79 3.66 -88.44 -0.32 -2.11 16 15 H 0.08 1.10 7.90 -51.93 -0.41 0.69 16 16 C 0.10 1.27 4.60 -1.41 -0.01 1.26 16 17 N -0.61 -8.21 3.35 -168.94 -0.57 -8.78 16 18 C 0.57 7.66 7.77 -12.27 -0.10 7.57 16 19 O -0.54 -8.58 16.86 5.34 0.09 -8.49 16 20 C -0.08 -0.89 5.80 -104.65 -0.61 -1.49 16 21 C -0.10 -0.96 8.11 -39.04 -0.32 -1.28 16 22 C 0.07 0.76 10.67 -17.56 -0.19 0.57 16 23 N -0.11 -1.43 3.58 -13.29 -0.05 -1.47 16 24 O -0.54 -10.57 20.04 -11.47 -0.23 -10.80 16 25 C 0.07 0.64 10.67 -17.57 -0.19 0.45 16 26 C -0.07 -0.61 9.68 -39.04 -0.38 -0.99 16 27 C 0.13 1.81 6.18 -2.46 -0.02 1.79 16 28 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.05 0.63 8.14 -51.94 -0.42 0.20 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.79 7.60 -51.93 -0.39 0.39 16 32 H 0.02 0.42 7.88 -51.93 -0.41 0.01 16 33 H 0.25 6.40 8.31 -40.82 -0.34 6.06 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.13 2.87 4.86 -51.93 -0.25 2.62 16 36 H 0.10 1.47 7.24 -51.93 -0.38 1.10 16 37 H 0.08 0.85 5.73 -51.93 -0.30 0.56 16 38 H 0.18 1.62 4.77 -52.49 -0.25 1.37 16 39 H 0.19 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.19 1.37 8.06 -52.48 -0.42 0.94 16 41 H 0.17 1.21 7.86 -52.49 -0.41 0.80 16 42 H 0.08 1.10 7.62 -51.93 -0.40 0.70 16 43 H 0.08 1.30 7.53 -51.93 -0.39 0.91 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -33.38 346.36 -8.50 -41.88 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.67 Total: 1.47 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.25 Total: 2.50 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.63 Total: -47.06 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.14 Total: -19.28 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.38 -8.50 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091456359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.571 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds