Wall clock time and date at job start Tue Mar 31 2020 11:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53764 * 112.06872 * 2 1 4 4 N 1.47332 * 106.42052 * 141.00730 * 3 2 1 5 5 C 1.36938 * 126.77224 * 148.65376 * 4 3 2 6 6 H 1.08005 * 119.99887 * 0.05079 * 5 4 3 7 7 C 1.38814 * 120.00264 * 180.02562 * 5 4 3 8 8 N 1.31615 * 119.99737 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00029 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47161 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47113 * 120.00354 * 9 7 5 12 12 H 1.48502 * 109.46938 * 240.00118 * 9 7 5 13 13 C 1.47203 * 106.52883 * 328.67570 * 4 3 2 14 14 C 1.53768 * 106.45218 * 31.33693 * 13 4 3 15 15 H 1.08995 * 112.06397 * 218.97451 * 14 13 4 16 16 C 1.54308 * 109.07811 * 94.26508 * 14 13 4 17 17 N 1.49981 * 103.81352 * 224.35918 * 16 14 13 18 18 C 1.34775 * 127.21459 * 219.20739 * 17 16 14 19 19 O 1.21535 * 119.99787 * 173.23063 * 18 17 16 20 20 C 1.47977 * 120.00345 * 353.23353 * 18 17 16 21 21 C 1.39915 * 120.91150 * 340.05639 * 20 18 17 22 22 C 1.38017 * 119.00857 * 179.72633 * 21 20 18 23 23 N 1.31991 * 120.88944 * 0.55886 * 22 21 20 24 24 O 1.41599 * 118.98694 * 179.73504 * 23 22 21 25 25 C 1.31989 * 122.02611 * 359.71354 * 23 22 21 26 26 C 1.38015 * 120.88993 * 359.97438 * 25 23 22 27 27 C 1.48112 * 104.93758 * 38.70289 * 17 16 14 28 28 H 1.09010 * 109.46592 * 301.81893 * 1 2 3 29 29 H 1.08989 * 109.47594 * 61.82103 * 1 2 3 30 30 H 1.09000 * 109.47184 * 181.82925 * 1 2 3 31 31 H 1.08996 * 110.06595 * 260.23852 * 3 2 1 32 32 H 1.09001 * 110.06341 * 21.70945 * 3 2 1 33 33 H 0.97004 * 119.99906 * 179.97438 * 8 7 5 34 34 H 1.09003 * 110.07082 * 272.07721 * 13 4 3 35 35 H 1.08993 * 110.07315 * 150.59884 * 13 4 3 36 36 H 1.09004 * 110.38931 * 342.54743 * 16 14 13 37 37 H 1.09000 * 110.39000 * 104.93065 * 16 14 13 38 38 H 1.07999 * 120.49652 * 359.97438 * 21 20 18 39 39 H 1.08002 * 119.55495 * 180.27426 * 22 21 20 40 40 H 1.08005 * 119.55627 * 180.02562 * 25 23 22 41 41 H 1.08002 * 120.49633 * 179.97438 * 26 25 23 42 42 H 1.08994 * 110.38989 * 201.90733 * 27 17 16 43 43 H 1.09000 * 110.39200 * 79.51930 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1077 1.4250 0.0000 4 7 3.2821 1.3983 0.8892 5 6 4.4151 2.1586 0.7739 6 1 4.5092 2.8683 -0.0348 7 6 5.4426 2.0176 1.6966 8 7 5.3279 1.1527 2.6820 9 14 6.9879 3.0553 1.5396 10 1 6.8697 3.9431 0.3551 11 1 7.1563 3.8805 2.7626 12 1 8.1663 2.1666 1.3758 13 6 2.9991 0.3930 1.9266 14 6 2.1157 -0.6781 1.2657 15 1 1.3366 -1.0380 1.9376 16 6 3.0121 -1.8236 0.7505 17 7 2.4712 -2.1139 -0.6179 18 6 2.3204 -3.3223 -1.1954 19 8 1.7533 -3.4176 -2.2661 20 6 2.8452 -4.5330 -0.5258 21 6 3.8346 -4.4380 0.4590 22 6 4.2917 -5.5922 1.0621 23 7 3.8161 -6.7731 0.7133 24 8 4.3180 -7.9316 1.3544 25 6 2.8869 -6.9072 -0.2144 26 6 2.3695 -5.8047 -0.8636 27 6 2.1309 -0.7878 -1.1831 28 1 -0.3633 0.5419 0.8733 29 1 -0.3634 0.4852 -0.9057 30 1 -0.3633 -1.0271 0.0328 31 1 2.4090 1.7063 -1.0090 32 1 1.3666 2.1289 0.3787 33 1 6.0461 1.0539 3.3266 34 1 2.4679 0.8541 2.7594 35 1 3.9290 -0.0539 2.2780 36 1 4.0491 -1.4942 0.6850 37 1 2.9295 -2.6931 1.4025 38 1 4.2318 -3.4755 0.7458 39 1 5.0520 -5.5288 1.8265 40 1 2.5260 -7.8930 -0.4684 41 1 1.6095 -5.9218 -1.6221 42 1 1.3965 -0.8925 -1.9817 43 1 3.0278 -0.2913 -1.5535 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091456359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:10 Heat of formation + Delta-G solvation = 55.620716 kcal Electronic energy + Delta-G solvation = -27142.198047 eV Core-core repulsion = 23384.149879 eV Total energy + Delta-G solvation = -3758.048168 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.59913 -41.37633 -39.74828 -36.59823 -35.76855 -34.44549 -33.04763 -32.41096 -31.64073 -31.26659 -28.11520 -27.70734 -26.81794 -25.76361 -25.21484 -24.03740 -21.87673 -21.32644 -20.11443 -18.97409 -18.69518 -18.52378 -17.97005 -17.18179 -16.75731 -16.64985 -16.53221 -16.34066 -15.88699 -15.47867 -15.12734 -14.92632 -14.82748 -14.35783 -13.92802 -13.83034 -13.53559 -13.29419 -13.17129 -13.10926 -12.88077 -12.74445 -12.43713 -12.38785 -12.24418 -11.90191 -11.79547 -11.46885 -11.36771 -11.32837 -11.18290 -10.80677 -10.79525 -10.70423 -10.08843 -9.84438 -8.84991 -7.71352 -5.16742 -0.96154 -0.47695 1.38508 1.41110 1.50151 1.53311 1.60467 1.63197 2.20081 2.52597 2.91515 3.31381 3.35567 3.39384 3.45929 3.53250 3.67099 3.74812 3.78757 3.99215 4.19578 4.23862 4.26621 4.38010 4.41216 4.56661 4.59716 4.63551 4.73701 4.75651 4.82594 4.87138 4.95836 5.01023 5.18417 5.26019 5.30384 5.44907 5.56908 5.59905 5.66075 5.75442 5.88565 6.33474 6.43202 6.82000 7.17526 7.82515 8.49008 9.27416 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013538 B = 0.004138 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.790365 B = 6765.434221 C = 8127.074328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C 0.139 3.861 4 N -0.615 5.615 5 C -0.227 4.227 6 H 0.078 0.922 7 C -0.055 4.055 8 N -0.941 5.941 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.297 1.297 12 H -0.292 1.292 13 C 0.142 3.858 14 C -0.110 4.110 15 H 0.100 0.900 16 C 0.104 3.896 17 N -0.606 5.606 18 C 0.578 3.422 19 O -0.560 6.560 20 C -0.082 4.082 21 C -0.089 4.089 22 C 0.078 3.922 23 N -0.130 5.130 24 O -0.612 6.612 25 C 0.080 3.920 26 C -0.050 4.050 27 C 0.129 3.871 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.022 0.978 33 H 0.248 0.752 34 H -0.017 1.017 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.191 0.809 39 H 0.201 0.799 40 H 0.211 0.789 41 H 0.199 0.801 42 H 0.087 0.913 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.317 -7.899 -6.396 13.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.080 4.080 3 C 0.013 3.987 4 N -0.339 5.339 5 C -0.356 4.356 6 H 0.096 0.904 7 C -0.248 4.248 8 N -0.591 5.591 9 Si 0.798 3.202 10 H -0.198 1.198 11 H -0.225 1.225 12 H -0.219 1.219 13 C 0.016 3.984 14 C -0.130 4.130 15 H 0.119 0.881 16 C -0.017 4.017 17 N -0.338 5.338 18 C 0.367 3.633 19 O -0.440 6.440 20 C -0.093 4.093 21 C -0.107 4.107 22 C -0.067 4.067 23 N 0.189 4.811 24 O -0.666 6.666 25 C -0.065 4.065 26 C -0.069 4.069 27 C 0.007 3.993 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.001 0.999 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.208 0.792 39 H 0.218 0.782 40 H 0.227 0.773 41 H 0.216 0.784 42 H 0.105 0.895 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.241 -8.320 -6.735 14.141 hybrid contribution 1.175 0.782 0.433 1.477 sum -8.066 -7.538 -6.301 12.711 Atomic orbital electron populations 1.21577 0.91199 1.02097 1.02582 1.22231 0.96573 0.95036 0.94203 1.21556 0.88811 0.94184 0.94177 1.44752 1.15092 1.44430 1.29603 1.19393 0.92713 1.14385 1.09131 0.90427 1.25345 1.00981 1.01065 0.97448 1.69764 1.33099 1.39024 1.17203 0.85160 0.80011 0.78040 0.77006 1.19756 1.22491 1.21929 1.21803 0.98941 0.88515 0.89102 1.23095 0.97627 0.95536 0.96748 0.88141 1.23355 0.98073 0.98687 0.81554 1.49414 1.61087 1.05288 1.17964 1.17682 0.79314 0.81891 0.84393 1.90798 1.44235 1.85967 1.23005 1.20544 0.97496 0.94570 0.96730 1.22715 0.94823 1.00181 0.93026 1.22961 1.00079 0.82530 1.01105 1.43433 1.14282 1.08747 1.14592 1.97641 1.80025 1.18179 1.70708 1.23098 0.90198 1.03718 0.89526 1.22130 0.98734 0.88097 0.97954 1.22385 0.99910 0.80856 0.96113 0.92065 0.91352 0.91983 0.93495 0.95970 0.94166 0.99887 0.87635 0.90403 0.87046 0.79240 0.78191 0.77265 0.78428 0.89466 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 8.60 71.98 0.62 -1.91 16 2 C -0.08 -2.14 1.08 -50.77 -0.05 -2.19 16 3 C 0.14 4.83 6.18 86.48 0.53 5.37 16 4 N -0.61 -27.18 3.39 -695.12 -2.36 -29.54 16 5 C -0.23 -11.35 10.34 84.03 0.87 -10.48 16 6 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 7 C -0.06 -2.82 5.49 84.86 0.47 -2.35 16 8 N -0.94 -49.35 10.08 21.65 0.22 -49.13 16 9 Si 0.97 42.10 29.55 68.60 2.03 44.12 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 11 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.14 5.78 5.55 86.50 0.48 6.26 16 14 C -0.11 -3.15 3.66 -9.38 -0.03 -3.18 16 15 H 0.10 2.51 7.90 -2.39 -0.02 2.49 16 16 C 0.10 2.55 4.60 86.14 0.40 2.95 16 17 N -0.61 -14.85 3.35 -806.70 -2.70 -17.55 16 18 C 0.58 13.67 7.77 86.83 0.67 14.35 16 19 O -0.56 -16.16 16.86 -3.82 -0.06 -16.22 16 20 C -0.08 -1.48 5.80 -19.88 -0.12 -1.60 16 21 C -0.09 -1.48 8.11 22.62 0.18 -1.29 16 22 C 0.08 1.52 10.67 84.62 0.90 2.43 16 23 N -0.13 -3.27 3.58 -195.97 -0.70 -3.97 16 24 O -0.61 -23.98 20.04 -38.78 -0.78 -24.76 16 25 C 0.08 1.35 10.67 84.62 0.90 2.25 16 26 C -0.05 -0.71 9.68 22.62 0.22 -0.49 16 27 C 0.13 3.46 6.18 86.52 0.53 4.00 16 28 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 1.60 7.60 -2.39 -0.02 1.58 16 32 H 0.02 0.79 7.88 -2.39 -0.02 0.77 16 33 H 0.25 12.78 8.31 -92.71 -0.77 12.01 16 34 H -0.02 -0.76 8.14 -2.39 -0.02 -0.78 16 35 H 0.11 4.83 4.86 -2.39 -0.01 4.82 16 36 H 0.08 2.29 7.24 -2.39 -0.02 2.27 16 37 H 0.11 2.04 5.73 -2.39 -0.01 2.03 16 38 H 0.19 2.92 4.77 -2.91 -0.01 2.91 16 39 H 0.20 3.32 8.06 -2.91 -0.02 3.29 16 40 H 0.21 2.47 8.06 -2.91 -0.02 2.44 16 41 H 0.20 1.88 7.86 -2.91 -0.02 1.86 16 42 H 0.09 2.21 7.62 -2.39 -0.02 2.19 16 43 H 0.07 2.00 7.53 -2.39 -0.02 1.98 16 Total: -1.00 -73.96 346.36 3.25 -70.71 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.03 Total: 12.24 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 6.58 Total: 14.10 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -5.54 Total: -100.20 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -0.84 Total: -40.98 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -73.96 3.25 -70.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091456359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.327 kcal (2) G-P(sol) polarization free energy of solvation -73.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds