Wall clock time and date at job start Tue Mar 31 2020 11:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99926 * 2 1 4 4 H 1.48502 * 109.47259 * 274.48739 * 3 2 1 5 5 H 1.48505 * 109.46937 * 34.48555 * 3 2 1 6 6 H 1.48500 * 109.47063 * 154.48271 * 3 2 1 7 7 C 1.38813 * 119.99901 * 180.27937 * 2 1 3 8 8 H 1.07998 * 120.00018 * 337.96082 * 7 2 1 9 9 N 1.36939 * 119.99593 * 157.96504 * 7 2 1 10 10 C 1.50237 * 130.84205 * 351.74324 * 9 7 2 11 11 H 1.09005 * 115.85717 * 359.68538 * 10 9 7 12 12 C 1.55387 * 101.26233 * 234.04610 * 10 9 7 13 13 C 1.54850 * 103.48692 * 327.24957 * 12 10 9 14 14 C 1.50238 * 130.83505 * 172.09057 * 9 7 2 15 15 H 1.09008 * 115.86006 * 0.31565 * 14 9 7 16 16 C 1.55839 * 101.04788 * 233.92779 * 14 9 7 17 17 H 1.09003 * 110.63094 * 85.55225 * 16 14 9 18 18 N 1.46504 * 110.62773 * 208.57173 * 16 14 9 19 19 C 1.34779 * 120.00015 * 275.30783 * 18 16 14 20 20 O 1.21494 * 119.99672 * 0.02562 * 19 18 16 21 21 C 1.48328 * 120.00225 * 179.97438 * 19 18 16 22 22 C 1.42265 * 126.93891 * 179.70764 * 21 19 18 23 23 C 1.35320 * 103.92020 * 179.91178 * 22 21 19 24 24 C 1.50700 * 126.66690 * 180.08844 * 23 22 21 25 25 C 1.52995 * 117.50366 * 189.03562 * 24 23 22 26 26 C 1.53001 * 117.50005 * 120.37165 * 24 23 22 27 27 O 1.34016 * 106.66793 * 0.35447 * 23 22 21 28 28 N 1.20898 * 111.84638 * 359.75780 * 27 23 22 29 29 C 1.55482 * 103.32934 * 326.97599 * 16 14 9 30 30 H 0.97007 * 120.00119 * 359.72559 * 1 2 3 31 31 H 1.08999 * 110.71049 * 208.69292 * 12 10 9 32 32 H 1.08997 * 110.49864 * 85.70286 * 12 10 9 33 33 H 1.09002 * 110.62258 * 241.38506 * 13 12 10 34 34 H 1.08989 * 110.76394 * 118.42930 * 13 12 10 35 35 H 0.96997 * 119.99762 * 95.30426 * 18 16 14 36 36 H 1.07998 * 128.04019 * 0.04141 * 22 21 19 37 37 H 1.09002 * 115.54795 * 334.70845 * 24 23 22 38 38 H 1.09010 * 117.49636 * 359.97438 * 25 24 23 39 39 H 1.08994 * 117.50240 * 145.02133 * 25 24 23 40 40 H 1.09000 * 117.50306 * 214.98064 * 26 24 23 41 41 H 1.09004 * 117.49893 * 359.97438 * 26 24 23 42 42 H 1.09004 * 110.60713 * 241.58858 * 29 16 14 43 43 H 1.08992 * 110.89586 * 118.55458 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4028 2.1013 -1.3958 5 1 1.4982 2.6235 0.7928 6 1 3.5919 1.4147 0.6031 7 6 2.0102 -1.2022 -0.0059 8 1 1.5294 -2.1050 0.3407 9 7 3.3046 -1.2432 -0.4510 10 6 4.1446 -0.1973 -1.1274 11 1 3.6572 0.7611 -1.3066 12 6 4.6087 -0.9576 -2.4007 13 6 4.7267 -2.4255 -1.9219 14 6 4.3196 -2.3504 -0.4194 15 1 3.9865 -3.2883 0.0250 16 6 5.5131 -1.6413 0.2886 17 1 5.4077 -1.7015 1.3719 18 7 6.7873 -2.2232 -0.1404 19 6 7.2618 -3.3287 0.4672 20 8 6.6326 -3.8430 1.3703 21 6 8.5516 -3.9183 0.0325 22 6 9.1892 -5.0708 0.5700 23 6 10.3205 -5.1888 -0.1631 24 6 11.3796 -6.2511 -0.0189 25 6 12.6754 -6.0691 -0.8116 26 6 11.6626 -7.1361 -1.2345 27 8 10.3189 -4.1739 -1.0383 28 7 9.3365 -3.4794 -0.9200 29 6 5.3934 -0.1686 -0.1956 30 1 -0.4851 0.8401 0.0040 31 1 5.5752 -0.5857 -2.7408 32 1 3.8628 -0.8701 -3.1906 33 1 5.7517 -2.7816 -2.0247 34 1 4.0410 -3.0682 -2.4738 35 1 7.2894 -1.8128 -0.8617 36 1 8.8484 -5.7055 1.3747 37 1 11.4529 -6.7112 0.9665 38 1 12.7618 -5.1810 -1.4379 39 1 13.6012 -6.4097 -0.3480 40 1 11.9225 -8.1783 -1.0488 41 1 11.0824 -6.9502 -2.1384 42 1 6.2824 0.1252 -0.7538 43 1 5.2296 0.5050 0.6455 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095831915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:45 Heat of formation + Delta-G solvation = 118.098829 kcal Electronic energy + Delta-G solvation = -26547.637325 eV Core-core repulsion = 22792.298411 eV Total energy + Delta-G solvation = -3755.338914 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.32443 -40.31013 -38.63209 -37.86055 -34.32071 -34.07653 -32.42705 -31.73495 -29.81057 -29.43028 -28.39335 -25.30949 -24.17522 -23.71021 -22.91467 -22.61753 -21.55622 -20.42071 -19.78174 -18.92827 -18.05368 -17.85960 -17.21144 -16.82443 -16.13586 -15.95676 -15.46140 -15.16600 -14.83507 -14.20195 -13.99990 -13.79013 -13.43595 -13.08392 -12.87937 -12.69437 -12.22002 -12.11643 -12.00985 -11.89688 -11.64740 -11.29333 -11.20425 -11.14975 -10.99856 -10.90495 -10.65184 -10.49479 -10.38196 -10.12894 -9.77825 -9.62380 -9.52409 -9.27788 -8.95089 -8.73205 -7.25275 -5.92273 -3.18036 0.88621 1.41136 2.55701 2.96629 3.15098 3.29197 3.30590 3.42932 3.47966 3.78594 3.97093 4.24429 4.37841 4.52441 4.59360 4.70045 4.85373 4.98088 5.08145 5.12232 5.16351 5.20123 5.33031 5.35066 5.49039 5.56958 5.59386 5.62776 5.63536 5.73157 5.81051 5.89953 5.96481 6.21117 6.27029 6.34558 6.39383 6.57820 6.68355 6.83258 6.86900 7.34333 7.46736 7.79918 8.15731 8.31183 8.72117 9.64434 10.22341 11.24111 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034802 B = 0.002836 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.367885 B = 9872.052638 C =10009.475482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 0.873 3.127 4 H -0.290 1.290 5 H -0.304 1.304 6 H -0.261 1.261 7 C -0.226 4.226 8 H 0.099 0.901 9 N -0.602 5.602 10 C 0.123 3.877 11 H 0.093 0.907 12 C -0.131 4.131 13 C -0.130 4.130 14 C 0.138 3.862 15 H 0.099 0.901 16 C 0.127 3.873 17 H 0.093 0.907 18 N -0.696 5.696 19 C 0.593 3.407 20 O -0.519 6.519 21 C -0.017 4.017 22 C -0.175 4.175 23 C -0.006 4.006 24 C -0.086 4.086 25 C -0.166 4.166 26 C -0.162 4.162 27 O 0.119 5.881 28 N -0.332 5.332 29 C -0.141 4.141 30 H 0.262 0.738 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.402 0.598 36 H 0.182 0.818 37 H 0.141 0.859 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.464 -10.948 -2.927 28.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.182 4.182 3 Si 0.705 3.295 4 H -0.219 1.219 5 H -0.232 1.232 6 H -0.186 1.186 7 C -0.352 4.352 8 H 0.116 0.884 9 N -0.324 5.324 10 C 0.016 3.984 11 H 0.111 0.889 12 C -0.170 4.170 13 C -0.170 4.170 14 C 0.030 3.970 15 H 0.117 0.883 16 C 0.021 3.979 17 H 0.111 0.889 18 N -0.347 5.347 19 C 0.375 3.625 20 O -0.393 6.393 21 C -0.176 4.176 22 C -0.197 4.197 23 C -0.069 4.069 24 C -0.105 4.105 25 C -0.203 4.203 26 C -0.199 4.199 27 O 0.044 5.956 28 N -0.034 5.034 29 C -0.180 4.180 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.237 0.763 36 H 0.199 0.801 37 H 0.159 0.841 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.083 0.917 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 25.459 -10.134 -2.990 27.565 hybrid contribution 0.438 0.736 0.296 0.906 sum 25.897 -9.398 -2.694 27.682 Atomic orbital electron populations 1.69837 1.05354 1.26373 1.54046 1.24721 0.95089 0.97262 1.01106 0.87081 0.80332 0.85108 0.76979 1.21869 1.23249 1.18609 1.18670 0.83098 0.95964 1.37461 0.88361 1.46829 1.09577 1.09050 1.66936 1.23045 0.89879 0.93796 0.91655 0.88923 1.22865 0.99597 0.96101 0.98464 1.22911 0.99679 0.96539 0.97841 1.23192 0.87384 0.92753 0.93700 0.88333 1.22859 0.81520 0.93361 1.00125 0.88934 1.46107 1.23595 1.27593 1.37439 1.16863 0.82230 0.80949 0.82412 1.90821 1.57939 1.61037 1.29521 1.23644 0.98847 0.97946 0.97170 1.22353 0.94197 0.99137 1.04033 1.23408 0.98122 0.92549 0.92790 1.20448 0.94328 0.96725 0.99048 1.23109 0.92860 1.01705 1.02660 1.23149 1.02427 0.96889 0.97409 1.84738 1.34013 1.29812 1.46997 1.74180 0.96176 1.15073 1.17970 1.23461 0.98807 0.94913 1.00864 0.92792 0.92646 0.91872 0.92565 0.92059 0.76282 0.80112 0.84150 0.87697 0.87489 0.87366 0.88026 0.91691 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.38 13.97 55.49 0.78 -27.61 16 2 C 0.02 0.46 5.50 -17.43 -0.10 0.37 16 3 Si 0.87 22.00 24.62 -169.99 -4.18 17.81 16 4 H -0.29 -7.17 6.82 56.52 0.39 -6.79 16 5 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 6 H -0.26 -6.10 4.73 56.52 0.27 -5.83 16 7 C -0.23 -6.41 10.94 -15.06 -0.16 -6.57 16 8 H 0.10 2.97 8.06 -52.49 -0.42 2.55 16 9 N -0.60 -14.38 2.85 -146.09 -0.42 -14.79 16 10 C 0.12 2.55 3.54 -63.05 -0.22 2.33 16 11 H 0.09 2.09 3.47 -51.93 -0.18 1.91 16 12 C -0.13 -2.32 6.42 -24.49 -0.16 -2.48 16 13 C -0.13 -2.28 6.33 -24.24 -0.15 -2.44 16 14 C 0.14 2.78 5.34 -62.80 -0.34 2.45 16 15 H 0.10 2.06 8.14 -51.92 -0.42 1.64 16 16 C 0.13 2.27 3.08 -65.09 -0.20 2.07 16 17 H 0.09 1.81 7.75 -51.93 -0.40 1.41 16 18 N -0.70 -10.46 3.62 -51.86 -0.19 -10.65 16 19 C 0.59 9.35 7.84 -12.11 -0.09 9.26 16 20 O -0.52 -9.75 16.71 5.37 0.09 -9.66 16 21 C -0.02 -0.22 7.19 -82.53 -0.59 -0.82 16 22 C -0.17 -1.88 10.92 -39.08 -0.43 -2.31 16 23 C -0.01 -0.05 6.93 -35.35 -0.24 -0.30 16 24 C -0.09 -0.47 6.26 -91.77 -0.57 -1.05 16 25 C -0.17 -0.71 10.18 -26.69 -0.27 -0.98 16 26 C -0.16 -0.71 10.24 -26.69 -0.27 -0.99 16 27 O 0.12 1.26 10.96 17.25 0.19 1.45 16 28 N -0.33 -4.15 11.84 33.29 0.39 -3.75 16 29 C -0.14 -2.50 5.99 -23.89 -0.14 -2.65 16 30 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 31 H 0.05 0.82 7.80 -51.93 -0.41 0.41 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.87 6.51 -51.93 -0.34 0.53 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.40 5.31 7.81 -40.82 -0.32 4.99 16 36 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.50 8.01 -51.92 -0.42 0.09 16 39 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.95 7.32 -51.93 -0.38 0.57 16 43 H 0.08 1.47 6.59 -51.93 -0.34 1.13 16 LS Contribution 346.61 15.07 5.22 5.22 Total: -1.00 -32.99 346.61 -7.94 -40.93 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.87 Total: 5.16 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -3.95 Total: -4.10 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.57 Total: -56.81 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.28 Total: -8.22 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.18 Total: 17.81 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.99 -7.94 -40.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095831915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.032 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds