Wall clock time and date at job start Tue Mar 31 2020 11:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99926 * 2 1 4 4 H 1.48502 * 109.47259 * 274.48739 * 3 2 1 5 5 H 1.48505 * 109.46937 * 34.48555 * 3 2 1 6 6 H 1.48500 * 109.47063 * 154.48271 * 3 2 1 7 7 C 1.38813 * 119.99901 * 180.27937 * 2 1 3 8 8 H 1.07998 * 120.00018 * 337.96082 * 7 2 1 9 9 N 1.36939 * 119.99593 * 157.96504 * 7 2 1 10 10 C 1.50237 * 130.84205 * 351.74324 * 9 7 2 11 11 H 1.09005 * 115.85717 * 359.68538 * 10 9 7 12 12 C 1.55387 * 101.26233 * 234.04610 * 10 9 7 13 13 C 1.54850 * 103.48692 * 327.24957 * 12 10 9 14 14 C 1.50238 * 130.83505 * 172.09057 * 9 7 2 15 15 H 1.09008 * 115.86006 * 0.31565 * 14 9 7 16 16 C 1.55839 * 101.04788 * 233.92779 * 14 9 7 17 17 H 1.09003 * 110.63094 * 85.55225 * 16 14 9 18 18 N 1.46504 * 110.62773 * 208.57173 * 16 14 9 19 19 C 1.34779 * 120.00015 * 275.30783 * 18 16 14 20 20 O 1.21494 * 119.99672 * 0.02562 * 19 18 16 21 21 C 1.48328 * 120.00225 * 179.97438 * 19 18 16 22 22 C 1.42265 * 126.93891 * 179.70764 * 21 19 18 23 23 C 1.35320 * 103.92020 * 179.91178 * 22 21 19 24 24 C 1.50700 * 126.66690 * 180.08844 * 23 22 21 25 25 C 1.52995 * 117.50366 * 189.03562 * 24 23 22 26 26 C 1.53001 * 117.50005 * 120.37165 * 24 23 22 27 27 O 1.34016 * 106.66793 * 0.35447 * 23 22 21 28 28 N 1.20898 * 111.84638 * 359.75780 * 27 23 22 29 29 C 1.55482 * 103.32934 * 326.97599 * 16 14 9 30 30 H 0.97007 * 120.00119 * 359.72559 * 1 2 3 31 31 H 1.08999 * 110.71049 * 208.69292 * 12 10 9 32 32 H 1.08997 * 110.49864 * 85.70286 * 12 10 9 33 33 H 1.09002 * 110.62258 * 241.38506 * 13 12 10 34 34 H 1.08989 * 110.76394 * 118.42930 * 13 12 10 35 35 H 0.96997 * 119.99762 * 95.30426 * 18 16 14 36 36 H 1.07998 * 128.04019 * 0.04141 * 22 21 19 37 37 H 1.09002 * 115.54795 * 334.70845 * 24 23 22 38 38 H 1.09010 * 117.49636 * 359.97438 * 25 24 23 39 39 H 1.08994 * 117.50240 * 145.02133 * 25 24 23 40 40 H 1.09000 * 117.50306 * 214.98064 * 26 24 23 41 41 H 1.09004 * 117.49893 * 359.97438 * 26 24 23 42 42 H 1.09004 * 110.60713 * 241.58858 * 29 16 14 43 43 H 1.08992 * 110.89586 * 118.55458 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4028 2.1013 -1.3958 5 1 1.4982 2.6235 0.7928 6 1 3.5919 1.4147 0.6031 7 6 2.0102 -1.2022 -0.0059 8 1 1.5294 -2.1050 0.3407 9 7 3.3046 -1.2432 -0.4510 10 6 4.1446 -0.1973 -1.1274 11 1 3.6572 0.7611 -1.3066 12 6 4.6087 -0.9576 -2.4007 13 6 4.7267 -2.4255 -1.9219 14 6 4.3196 -2.3504 -0.4194 15 1 3.9865 -3.2883 0.0250 16 6 5.5131 -1.6413 0.2886 17 1 5.4077 -1.7015 1.3719 18 7 6.7873 -2.2232 -0.1404 19 6 7.2618 -3.3287 0.4672 20 8 6.6326 -3.8430 1.3703 21 6 8.5516 -3.9183 0.0325 22 6 9.1892 -5.0708 0.5700 23 6 10.3205 -5.1888 -0.1631 24 6 11.3796 -6.2511 -0.0189 25 6 12.6754 -6.0691 -0.8116 26 6 11.6626 -7.1361 -1.2345 27 8 10.3189 -4.1739 -1.0383 28 7 9.3365 -3.4794 -0.9200 29 6 5.3934 -0.1686 -0.1956 30 1 -0.4851 0.8401 0.0040 31 1 5.5752 -0.5857 -2.7408 32 1 3.8628 -0.8701 -3.1906 33 1 5.7517 -2.7816 -2.0247 34 1 4.0410 -3.0682 -2.4738 35 1 7.2894 -1.8128 -0.8617 36 1 8.8484 -5.7055 1.3747 37 1 11.4529 -6.7112 0.9665 38 1 12.7618 -5.1810 -1.4379 39 1 13.6012 -6.4097 -0.3480 40 1 11.9225 -8.1783 -1.0488 41 1 11.0824 -6.9502 -2.1384 42 1 6.2824 0.1252 -0.7538 43 1 5.2296 0.5050 0.6455 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095831915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:45 Heat of formation + Delta-G solvation = 96.424814 kcal Electronic energy + Delta-G solvation = -26548.577181 eV Core-core repulsion = 22792.298411 eV Total energy + Delta-G solvation = -3756.278770 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.20172 -41.77804 -40.04490 -38.25730 -35.72850 -35.10274 -34.41048 -32.56462 -31.56942 -31.02451 -29.91468 -26.56540 -25.60457 -24.64876 -23.62205 -23.18501 -22.91526 -22.09396 -20.98851 -20.49036 -19.09920 -18.90716 -18.48585 -18.04507 -17.61203 -17.02191 -16.73546 -16.51721 -15.69162 -15.60535 -15.34462 -15.20137 -14.90850 -14.50703 -14.30011 -13.93075 -13.55505 -13.33757 -13.15518 -12.93758 -12.71904 -12.63607 -12.57913 -12.37140 -12.30025 -12.15857 -11.97935 -11.60855 -11.58976 -11.43549 -11.32946 -11.27747 -11.09738 -10.91787 -10.27185 -10.18392 -9.24751 -8.15743 -5.38032 -0.03172 0.56823 1.25959 1.39209 1.48040 1.70080 1.91211 1.98775 2.42015 2.77135 2.90342 2.95900 3.16873 3.34848 3.59785 3.74656 3.76346 3.90849 3.94153 4.01827 4.05257 4.14865 4.22224 4.31702 4.34349 4.45147 4.49493 4.54155 4.63422 4.78157 4.83716 4.85739 4.91518 4.96771 5.04275 5.09313 5.16842 5.22734 5.27189 5.29145 5.45623 5.52752 6.08930 6.26351 6.57118 6.87854 6.98687 7.44866 8.16358 9.04552 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034802 B = 0.002836 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.367885 B = 9872.052638 C =10009.475482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.050 4.050 3 Si 0.941 3.059 4 H -0.279 1.279 5 H -0.317 1.317 6 H -0.232 1.232 7 C -0.216 4.216 8 H 0.057 0.943 9 N -0.627 5.627 10 C 0.107 3.893 11 H 0.080 0.920 12 C -0.122 4.122 13 C -0.118 4.118 14 C 0.127 3.873 15 H 0.076 0.924 16 C 0.143 3.857 17 H 0.071 0.929 18 N -0.684 5.684 19 C 0.595 3.405 20 O -0.556 6.556 21 C -0.037 4.037 22 C -0.190 4.190 23 C 0.015 3.985 24 C -0.100 4.100 25 C -0.159 4.159 26 C -0.157 4.157 27 O 0.127 5.873 28 N -0.339 5.339 29 C -0.130 4.130 30 H 0.260 0.740 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.416 0.584 36 H 0.190 0.810 37 H 0.162 0.838 38 H 0.099 0.901 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.284 -10.925 -4.197 33.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.243 4.243 3 Si 0.771 3.229 4 H -0.207 1.207 5 H -0.247 1.247 6 H -0.156 1.156 7 C -0.344 4.344 8 H 0.075 0.925 9 N -0.351 5.351 10 C 0.002 3.998 11 H 0.097 0.903 12 C -0.161 4.161 13 C -0.158 4.158 14 C 0.019 3.981 15 H 0.094 0.906 16 C 0.036 3.964 17 H 0.089 0.911 18 N -0.336 5.336 19 C 0.380 3.620 20 O -0.433 6.433 21 C -0.195 4.195 22 C -0.213 4.213 23 C -0.048 4.048 24 C -0.119 4.119 25 C -0.196 4.196 26 C -0.195 4.195 27 O 0.050 5.950 28 N -0.039 5.039 29 C -0.169 4.169 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.254 0.746 36 H 0.208 0.792 37 H 0.179 0.821 38 H 0.117 0.883 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.111 0.889 42 H 0.128 0.872 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 30.362 -10.114 -4.300 32.290 hybrid contribution -0.973 0.511 0.662 1.283 sum 29.390 -9.603 -3.637 31.132 Atomic orbital electron populations 1.69989 1.07307 1.27050 1.56971 1.25461 0.95832 1.01016 1.01999 0.86002 0.79864 0.79593 0.77398 1.20658 1.24683 1.15589 1.18518 0.85281 0.94571 1.36002 0.92516 1.46875 1.08986 1.11535 1.67670 1.23308 0.90170 0.92716 0.93568 0.90259 1.22854 1.01574 0.95166 0.96534 1.22821 1.00905 0.96877 0.95159 1.23332 0.87486 0.91288 0.95968 0.90605 1.22368 0.81849 0.93526 0.98614 0.91097 1.45854 1.22527 1.27469 1.37741 1.17151 0.82740 0.80503 0.81647 1.90806 1.59273 1.62049 1.31157 1.23360 0.98308 0.99265 0.98611 1.22539 0.94816 0.98961 1.05000 1.23935 0.98029 0.91926 0.90913 1.20740 0.94145 0.96329 1.00650 1.23222 0.93085 1.01422 1.01893 1.23247 1.02023 0.97932 0.96254 1.84712 1.33198 1.30004 1.47091 1.74162 0.96442 1.15586 1.17758 1.23392 0.99016 0.94113 1.00364 0.93117 0.88108 0.92831 0.89775 0.93048 0.74621 0.79233 0.82089 0.88278 0.85490 0.85468 0.88909 0.87177 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.97 13.97 21.65 0.30 -62.67 16 2 C -0.05 -3.02 5.50 84.86 0.47 -2.56 16 3 Si 0.94 46.26 24.62 68.60 1.69 47.95 16 4 H -0.28 -13.06 6.82 99.48 0.68 -12.38 16 5 H -0.32 -16.14 7.11 99.48 0.71 -15.43 16 6 H -0.23 -10.17 4.73 99.48 0.47 -9.70 16 7 C -0.22 -12.80 10.94 84.03 0.92 -11.88 16 8 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 9 N -0.63 -30.24 2.85 -616.10 -1.76 -32.00 16 10 C 0.11 4.22 3.54 46.06 0.16 4.39 16 11 H 0.08 3.36 3.47 -2.38 -0.01 3.36 16 12 C -0.12 -3.92 6.42 32.05 0.21 -3.72 16 13 C -0.12 -3.92 6.33 32.21 0.20 -3.71 16 14 C 0.13 5.11 5.34 46.23 0.25 5.35 16 15 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 16 C 0.14 4.90 3.08 46.83 0.14 5.05 16 17 H 0.07 2.78 7.75 -2.39 -0.02 2.76 16 18 N -0.68 -18.94 3.62 -436.27 -1.58 -20.52 16 19 C 0.59 18.11 7.84 86.93 0.68 18.79 16 20 O -0.56 -21.03 16.71 -3.70 -0.06 -21.09 16 21 C -0.04 -0.93 7.19 42.96 0.31 -0.62 16 22 C -0.19 -3.78 10.92 22.60 0.25 -3.53 16 23 C 0.01 0.23 6.93 25.01 0.17 0.40 16 24 C -0.10 -0.77 6.26 -11.54 -0.07 -0.84 16 25 C -0.16 -0.81 10.18 30.62 0.31 -0.50 16 26 C -0.16 -0.88 10.24 30.62 0.31 -0.57 16 27 O 0.13 2.34 10.96 71.89 0.79 3.13 16 28 N -0.34 -7.62 11.84 -49.52 -0.59 -8.21 16 29 C -0.13 -4.16 5.99 32.43 0.19 -3.97 16 30 H 0.26 16.12 8.31 -92.70 -0.77 15.35 16 31 H 0.10 2.37 7.80 -2.39 -0.02 2.35 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 2.32 6.51 -2.39 -0.02 2.30 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.42 9.32 7.81 -92.71 -0.72 8.60 16 36 H 0.19 3.28 8.06 -2.91 -0.02 3.26 16 37 H 0.16 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.10 0.65 8.01 -2.38 -0.02 0.63 16 39 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.11 2.57 7.32 -2.38 -0.02 2.56 16 43 H 0.07 2.43 6.59 -2.39 -0.02 2.41 16 Total: -1.00 -76.37 346.61 3.37 -73.00 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.07 Total: 18.31 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 4.51 Total: 2.07 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -3.62 Total: -123.39 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.73 Total: -17.96 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.69 Total: 47.95 kcal Total: -76.37 3.37 -73.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095831915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.429 kcal (2) G-P(sol) polarization free energy of solvation -76.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds