Wall clock time and date at job start Tue Mar 31 2020 11:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00052 * 2 1 4 4 H 1.48501 * 109.46797 * 264.98449 * 3 2 1 5 5 H 1.48501 * 109.47012 * 24.97827 * 3 2 1 6 6 H 1.48496 * 109.47217 * 144.98616 * 3 2 1 7 7 C 1.38814 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99612 * 188.95637 * 7 2 1 9 9 N 1.36933 * 120.00067 * 8.95580 * 7 2 1 10 10 C 1.50240 * 130.83500 * 10.18635 * 9 7 2 11 11 H 1.08994 * 115.86630 * 0.33088 * 10 9 7 12 12 C 1.55846 * 101.04795 * 233.93906 * 10 9 7 13 13 C 1.54848 * 103.44918 * 327.06801 * 12 10 9 14 14 C 1.50235 * 130.84071 * 190.15110 * 9 7 2 15 15 H 1.08996 * 115.85882 * 359.67099 * 14 9 7 16 16 C 1.55843 * 101.05357 * 233.99151 * 14 9 7 17 17 H 1.09006 * 110.62341 * 85.55318 * 16 14 9 18 18 N 1.46502 * 110.62713 * 208.56986 * 16 14 9 19 19 C 1.34771 * 119.99858 * 269.61398 * 18 16 14 20 20 O 1.21680 * 120.00723 * 0.02562 * 19 18 16 21 21 C 1.46724 * 119.99763 * 179.97438 * 19 18 16 22 22 O 1.35346 * 126.64216 * 0.03405 * 21 19 18 23 23 C 1.33671 * 107.68488 * 179.97438 * 22 21 19 24 24 N 1.30614 * 109.15329 * 359.97438 * 23 22 21 25 25 C 1.33696 * 108.99424 * 359.76950 * 24 23 22 26 26 C 1.50701 * 126.27208 * 180.25908 * 25 24 23 27 27 C 1.53002 * 117.50071 * 8.75941 * 26 25 24 28 28 C 1.52998 * 117.49913 * 300.13506 * 26 25 24 29 29 C 1.54848 * 103.44540 * 327.06361 * 16 14 9 30 30 H 0.97002 * 120.00052 * 0.02562 * 1 2 3 31 31 H 1.09005 * 110.62501 * 85.55536 * 12 10 9 32 32 H 1.08997 * 110.62771 * 208.41395 * 12 10 9 33 33 H 1.09004 * 110.62718 * 241.50640 * 13 12 10 34 34 H 1.08993 * 110.63073 * 118.48492 * 13 12 10 35 35 H 0.97001 * 119.99526 * 89.62103 * 18 16 14 36 36 H 1.07997 * 125.42275 * 179.97438 * 23 22 21 37 37 H 1.08998 * 115.54872 * 154.46527 * 26 25 24 38 38 H 1.08998 * 117.49781 * 359.97438 * 27 26 25 39 39 H 1.08996 * 117.50084 * 145.02170 * 27 26 25 40 40 H 1.08996 * 117.50075 * 214.98212 * 28 26 25 41 41 H 1.09007 * 117.50025 * 359.97438 * 28 26 25 42 42 H 1.09008 * 110.62934 * 118.48604 * 29 16 14 43 43 H 1.08998 * 110.62587 * 241.50293 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6037 1.9851 -1.3947 5 1 1.3986 2.6810 0.5912 6 1 3.4907 1.4731 0.8033 7 6 2.0103 -1.2022 0.0005 8 1 3.0803 -1.2078 0.1462 9 7 1.3381 -2.3809 -0.1835 10 6 -0.0800 -2.6482 -0.6015 11 1 -0.6910 -1.7679 -0.8008 12 6 -0.5638 -3.5715 0.5570 13 6 0.7112 -4.3593 0.9462 14 6 1.7918 -3.8049 -0.0304 15 1 2.8294 -3.9432 0.2734 16 6 1.4158 -4.3899 -1.4250 17 1 2.2138 -4.2089 -2.1452 18 7 1.1263 -5.8224 -1.3228 19 6 2.1156 -6.7231 -1.4852 20 8 3.2494 -6.3466 -1.7163 21 6 1.8257 -8.1577 -1.3822 22 8 0.6217 -8.7225 -1.1310 23 6 0.7895 -10.0486 -1.1206 24 7 2.0446 -10.3236 -1.3551 25 6 2.7158 -9.1802 -1.5275 26 6 4.1871 -9.0461 -1.8246 27 6 4.9624 -10.3254 -2.1460 28 6 5.1695 -9.6223 -0.8029 29 6 0.1407 -3.6020 -1.8141 30 1 -0.4850 0.8401 -0.0004 31 1 -0.9197 -2.9771 1.3986 32 1 -1.3446 -4.2476 0.2087 33 1 0.5648 -5.4281 0.7901 34 1 0.9877 -4.1556 1.9806 35 1 0.2225 -6.1225 -1.1383 36 1 0.0112 -10.7767 -0.9461 37 1 4.4802 -8.1351 -2.3463 38 1 4.4084 -11.2640 -2.1422 39 1 5.7658 -10.2562 -2.8794 40 1 6.1090 -9.0906 -0.6528 41 1 4.7516 -10.0981 0.0844 42 1 0.3063 -3.0302 -2.7272 43 1 -0.7070 -4.2771 -1.9310 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096008471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:02 Heat of formation + Delta-G solvation = 46.049510 kcal Electronic energy + Delta-G solvation = -26903.797025 eV Core-core repulsion = 23145.333818 eV Total energy + Delta-G solvation = -3758.463207 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.47198 -41.48773 -39.80590 -38.39027 -35.70534 -35.29438 -34.22888 -31.77518 -31.04092 -30.67539 -29.22491 -26.36087 -25.34339 -24.63488 -23.29477 -22.94957 -22.22713 -21.50443 -21.30442 -20.20449 -19.39353 -18.74461 -17.88682 -17.73851 -17.02653 -16.86334 -16.46753 -16.24039 -15.92228 -15.60648 -15.35241 -15.27416 -14.69756 -14.14342 -14.00901 -13.47323 -13.26573 -13.02673 -12.90491 -12.84996 -12.81051 -12.63890 -12.43618 -12.40681 -11.99036 -11.97020 -11.92178 -11.73691 -11.61094 -11.45469 -11.30897 -11.06227 -10.89440 -10.79588 -10.20964 -9.80133 -8.85341 -7.84678 -5.20659 -0.24467 1.38311 1.40885 1.46757 1.48186 1.55606 1.94885 2.14788 2.50233 2.94131 3.07124 3.31079 3.46634 3.48574 3.71514 3.91354 3.97703 4.05765 4.11285 4.13152 4.29616 4.37611 4.42255 4.45770 4.56118 4.59049 4.67785 4.74189 4.74848 4.92607 4.94111 5.03017 5.09030 5.11376 5.17891 5.23283 5.28144 5.30539 5.43142 5.52485 5.69418 5.84635 6.18962 6.32223 6.58241 6.99407 7.03701 7.66530 8.54529 9.25725 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.003265 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.305161 B = 8574.029528 C = 9357.219402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.059 4.059 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.229 4.229 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.146 3.854 11 H 0.108 0.892 12 C -0.121 4.121 13 C -0.118 4.118 14 C 0.119 3.881 15 H 0.071 0.929 16 C 0.146 3.854 17 H 0.068 0.932 18 N -0.686 5.686 19 C 0.604 3.396 20 O -0.548 6.548 21 C -0.127 4.127 22 O -0.189 6.189 23 C 0.230 3.770 24 N -0.518 5.518 25 C 0.105 3.895 26 C -0.117 4.117 27 C -0.144 4.144 28 C -0.154 4.154 29 C -0.129 4.129 30 H 0.249 0.751 31 H 0.033 0.967 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.414 0.586 36 H 0.312 0.688 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.006 -22.929 -3.111 23.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.252 4.252 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.358 4.358 8 H 0.088 0.912 9 N -0.337 5.337 10 C 0.040 3.960 11 H 0.126 0.874 12 C -0.160 4.160 13 C -0.158 4.158 14 C 0.011 3.989 15 H 0.089 0.911 16 C 0.040 3.960 17 H 0.086 0.914 18 N -0.336 5.336 19 C 0.391 3.609 20 O -0.428 6.428 21 C -0.183 4.183 22 O -0.075 6.075 23 C 0.005 3.995 24 N -0.246 5.246 25 C -0.018 4.018 26 C -0.136 4.136 27 C -0.181 4.181 28 C -0.191 4.191 29 C -0.168 4.168 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.252 0.748 36 H 0.326 0.674 37 H 0.138 0.862 38 H 0.122 0.878 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.111 0.889 42 H 0.075 0.925 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.014 -22.882 -3.248 23.111 hybrid contribution -0.251 1.829 0.312 1.872 sum -0.265 -21.053 -2.935 21.258 Atomic orbital electron populations 1.69854 1.05942 1.25330 1.57671 1.25444 0.96470 1.00259 1.03053 0.85177 0.77544 0.79578 0.77513 1.21406 1.21907 1.20143 1.19251 0.91057 0.83804 1.41694 0.91158 1.46694 1.09822 0.99438 1.77759 1.23357 0.86314 0.95063 0.91230 0.87420 1.22876 0.96581 0.97687 0.98850 1.22804 0.96015 0.98933 0.97998 1.23327 0.96232 0.84948 0.94417 0.91077 1.22237 0.98166 0.77801 0.97818 0.91392 1.45883 1.11698 1.05740 1.70329 1.16520 0.85021 0.82341 0.77067 1.90842 1.21971 1.78992 1.50974 1.22492 0.84548 0.94536 1.16691 1.84510 1.31885 1.23348 1.67791 1.29617 0.95890 0.80903 0.93054 1.70269 1.05513 1.28575 1.20271 1.21172 0.96362 0.87105 0.97163 1.20543 0.85130 1.00467 1.07448 1.23036 1.01611 0.94783 0.98689 1.23000 0.99596 1.02836 0.93690 1.23176 0.96238 0.98242 0.99183 0.94148 0.94834 0.89654 0.90057 0.94152 0.74770 0.67387 0.86197 0.87757 0.86708 0.87149 0.88865 0.92507 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.38 10.75 21.65 0.23 -54.15 16 2 C -0.06 -3.29 5.47 84.86 0.46 -2.83 16 3 Si 0.97 45.88 29.56 68.60 2.03 47.90 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.23 -12.89 10.55 84.03 0.89 -12.01 16 8 H 0.07 3.92 7.84 -2.91 -0.02 3.90 16 9 N -0.62 -30.89 2.97 -615.26 -1.83 -32.72 16 10 C 0.15 6.46 4.62 46.23 0.21 6.68 16 11 H 0.11 5.56 5.91 -2.39 -0.01 5.54 16 12 C -0.12 -4.50 6.44 32.21 0.21 -4.30 16 13 C -0.12 -4.24 6.32 32.21 0.20 -4.03 16 14 C 0.12 4.94 5.35 46.23 0.25 5.18 16 15 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 16 C 0.15 5.21 3.15 46.61 0.15 5.35 16 17 H 0.07 2.74 7.57 -2.38 -0.02 2.72 16 18 N -0.69 -19.27 3.71 -438.83 -1.63 -20.90 16 19 C 0.60 18.47 7.79 86.46 0.67 19.15 16 20 O -0.55 -20.38 14.53 -4.28 -0.06 -20.44 16 21 C -0.13 -3.25 7.18 24.05 0.17 -3.08 16 22 O -0.19 -3.50 10.57 -7.17 -0.08 -3.57 16 23 C 0.23 2.96 13.21 130.42 1.72 4.68 16 24 N -0.52 -10.50 10.89 -303.12 -3.30 -13.80 16 25 C 0.11 2.63 6.67 41.83 0.28 2.91 16 26 C -0.12 -2.87 5.60 -11.54 -0.06 -2.93 16 27 C -0.14 -2.67 10.15 30.60 0.31 -2.36 16 28 C -0.15 -3.11 10.23 30.59 0.31 -2.80 16 29 C -0.13 -4.53 6.20 32.21 0.20 -4.33 16 30 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 31 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.09 2.46 7.82 -2.39 -0.02 2.45 16 33 H 0.08 2.38 6.38 -2.38 -0.02 2.36 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.41 9.31 7.70 -92.71 -0.71 8.59 16 36 H 0.31 -0.20 8.06 -2.91 -0.02 -0.23 16 37 H 0.12 3.40 6.65 -2.39 -0.02 3.38 16 38 H 0.10 1.91 7.92 -2.39 -0.02 1.89 16 39 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.09 1.88 8.14 -2.38 -0.02 1.87 16 42 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 43 H 0.10 2.62 7.39 -2.39 -0.02 2.60 16 Total: -1.00 -71.54 351.78 1.68 -69.86 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.34 Total: 22.53 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 5.98 Total: 5.29 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -6.53 Total: -121.57 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.14 Total: -24.02 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -71.54 1.68 -69.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096008471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.910 kcal (2) G-P(sol) polarization free energy of solvation -71.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds