Wall clock time and date at job start Tue Mar 31 2020 11:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00419 * 2 1 4 4 H 1.48504 * 109.46867 * 274.48906 * 3 2 1 5 5 H 1.48498 * 109.47158 * 34.48574 * 3 2 1 6 6 H 1.48501 * 109.47340 * 154.49037 * 3 2 1 7 7 C 1.38816 * 119.99908 * 180.27264 * 2 1 3 8 8 H 1.07998 * 119.99736 * 337.95670 * 7 2 1 9 9 N 1.36937 * 120.00149 * 157.96343 * 7 2 1 10 10 C 1.50230 * 130.83911 * 351.74457 * 9 7 2 11 11 H 1.09003 * 115.85815 * 359.68741 * 10 9 7 12 12 C 1.55384 * 101.26415 * 234.04733 * 10 9 7 13 13 C 1.54848 * 103.48735 * 327.25081 * 12 10 9 14 14 C 1.50245 * 130.83806 * 172.09116 * 9 7 2 15 15 H 1.08999 * 115.85790 * 0.31696 * 14 9 7 16 16 C 1.55838 * 101.04872 * 233.92442 * 14 9 7 17 17 H 1.09008 * 110.62352 * 85.55168 * 16 14 9 18 18 N 1.46499 * 110.62392 * 208.56815 * 16 14 9 19 19 C 1.34775 * 120.00661 * 275.33831 * 18 16 14 20 20 O 1.21580 * 119.99583 * 0.02562 * 19 18 16 21 21 C 1.47508 * 120.00056 * 180.02562 * 19 18 16 22 22 C 1.36823 * 126.93866 * 179.71273 * 21 19 18 23 23 C 1.41264 * 103.84459 * 179.97438 * 22 21 19 24 24 C 1.50703 * 126.70833 * 180.09910 * 23 22 21 25 25 C 1.53001 * 117.49547 * 344.00401 * 24 23 22 26 26 C 1.53000 * 117.49642 * 275.34720 * 24 23 22 27 27 N 1.30131 * 106.59139 * 0.33353 * 23 22 21 28 28 O 1.20890 * 111.97470 * 359.78622 * 27 23 22 29 29 C 1.55479 * 103.33060 * 326.97744 * 16 14 9 30 30 H 0.97003 * 119.99524 * 359.72993 * 1 2 3 31 31 H 1.09006 * 110.71962 * 208.69368 * 12 10 9 32 32 H 1.09008 * 110.49914 * 85.70092 * 12 10 9 33 33 H 1.09005 * 110.62874 * 241.38782 * 13 12 10 34 34 H 1.08996 * 110.76637 * 118.42445 * 13 12 10 35 35 H 0.97007 * 119.99319 * 95.34707 * 18 16 14 36 36 H 1.07997 * 128.07977 * 0.03008 * 22 21 19 37 37 H 1.08996 * 115.54924 * 129.67110 * 24 23 22 38 38 H 1.09004 * 117.50061 * 0.02562 * 25 24 23 39 39 H 1.08998 * 117.49467 * 145.01964 * 25 24 23 40 40 H 1.08995 * 117.49918 * 214.97577 * 26 24 23 41 41 H 1.08998 * 117.50152 * 359.97438 * 26 24 23 42 42 H 1.08994 * 110.61165 * 241.58236 * 29 16 14 43 43 H 1.09002 * 110.89301 * 118.54447 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4029 2.1011 -1.3958 5 1 1.4984 2.6234 0.7927 6 1 3.5921 1.4145 0.6030 7 6 2.0102 -1.2022 -0.0057 8 1 1.5294 -2.1049 0.3410 9 7 3.3046 -1.2434 -0.4509 10 6 4.1446 -0.1977 -1.1274 11 1 3.6573 0.7607 -1.3066 12 6 4.6086 -0.9581 -2.4006 13 6 4.7265 -2.4259 -1.9217 14 6 4.3196 -2.3507 -0.4192 15 1 3.9864 -3.2885 0.0253 16 6 5.5132 -1.6415 0.2887 17 1 5.4077 -1.7016 1.3720 18 7 6.7872 -2.2237 -0.1403 19 6 7.2614 -3.3295 0.4669 20 8 6.6315 -3.8442 1.3705 21 6 8.5446 -3.9152 0.0353 22 6 9.1575 -5.0240 0.5520 23 6 10.3394 -5.1440 -0.2124 24 6 11.4004 -6.2047 -0.0702 25 6 11.4024 -7.0338 1.2157 26 6 12.4876 -5.9797 0.9825 27 7 10.3355 -4.1567 -1.0601 28 8 9.3525 -3.4630 -0.9421 29 6 5.3935 -0.1690 -0.1957 30 1 -0.4849 0.8401 0.0040 31 1 5.5751 -0.5864 -2.7409 32 1 3.8626 -0.8706 -3.1906 33 1 5.7515 -2.7822 -2.0244 34 1 4.0406 -3.0687 -2.4735 35 1 7.2896 -1.8131 -0.8614 36 1 8.8169 -5.6596 1.3559 37 1 11.6898 -6.7069 -0.9933 38 1 10.6361 -6.8123 1.9586 39 1 11.6936 -8.0814 1.1386 40 1 13.4922 -6.3342 0.7522 41 1 12.4358 -5.0643 1.5719 42 1 6.2824 0.1248 -0.7539 43 1 5.2297 0.5048 0.6454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096088479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:21 Heat of formation + Delta-G solvation = 118.024300 kcal Electronic energy + Delta-G solvation = -26605.404703 eV Core-core repulsion = 22850.062557 eV Total energy + Delta-G solvation = -3755.342146 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.26348 -40.38210 -38.71649 -38.01456 -34.41209 -33.55974 -32.53479 -32.08517 -29.83158 -29.45258 -28.37420 -25.04837 -24.71300 -23.70925 -22.84289 -22.22710 -21.59937 -20.46219 -19.94377 -19.00170 -18.51411 -17.99755 -17.11001 -16.51767 -16.19845 -15.69189 -15.57178 -15.21179 -14.88139 -14.29493 -14.17925 -13.93758 -13.45158 -13.07675 -12.78045 -12.56321 -12.26182 -12.17936 -12.01851 -11.96780 -11.56068 -11.31499 -11.23859 -11.17387 -10.93093 -10.90261 -10.53586 -10.43792 -10.22236 -10.17942 -9.91319 -9.81680 -9.65816 -9.29924 -8.99663 -8.78162 -7.27717 -5.94092 -3.20063 0.61210 1.70822 2.43693 2.92282 3.11168 3.21044 3.27796 3.41027 3.46836 3.64203 4.22035 4.34066 4.50270 4.53248 4.61468 4.63630 4.75215 4.96868 5.05320 5.12265 5.14280 5.17291 5.31261 5.38465 5.54588 5.57226 5.60108 5.60774 5.63800 5.70024 5.77702 5.85525 5.93198 6.17491 6.24285 6.26928 6.36013 6.54139 6.65880 6.79305 6.83423 7.31140 7.35354 7.81689 8.00648 8.29364 8.70252 9.62511 10.19897 11.22253 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033550 B = 0.002890 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.374107 B = 9686.747250 C = 9883.776089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.016 3.984 3 Si 0.873 3.127 4 H -0.290 1.290 5 H -0.304 1.304 6 H -0.260 1.260 7 C -0.227 4.227 8 H 0.099 0.901 9 N -0.601 5.601 10 C 0.122 3.878 11 H 0.093 0.907 12 C -0.131 4.131 13 C -0.131 4.131 14 C 0.138 3.862 15 H 0.099 0.901 16 C 0.126 3.874 17 H 0.094 0.906 18 N -0.696 5.696 19 C 0.599 3.401 20 O -0.509 6.509 21 C -0.074 4.074 22 C -0.153 4.153 23 C 0.041 3.959 24 C -0.088 4.088 25 C -0.162 4.162 26 C -0.163 4.163 27 N -0.342 5.342 28 O 0.118 5.882 29 C -0.141 4.141 30 H 0.262 0.738 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.403 0.597 36 H 0.182 0.818 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.899 -9.300 -1.061 25.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.705 3.295 4 H -0.219 1.219 5 H -0.233 1.233 6 H -0.186 1.186 7 C -0.353 4.353 8 H 0.116 0.884 9 N -0.324 5.324 10 C 0.016 3.984 11 H 0.111 0.889 12 C -0.171 4.171 13 C -0.170 4.170 14 C 0.029 3.971 15 H 0.117 0.883 16 C 0.021 3.979 17 H 0.112 0.888 18 N -0.346 5.346 19 C 0.381 3.619 20 O -0.384 6.384 21 C -0.140 4.140 22 C -0.175 4.175 23 C -0.116 4.116 24 C -0.107 4.107 25 C -0.200 4.200 26 C -0.201 4.201 27 N -0.042 5.042 28 O 0.045 5.955 29 C -0.181 4.181 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.238 0.762 36 H 0.200 0.800 37 H 0.143 0.857 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.085 0.915 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 23.867 -9.156 -1.265 25.595 hybrid contribution 0.257 0.866 0.188 0.923 sum 24.125 -8.290 -1.077 25.532 Atomic orbital electron populations 1.69837 1.05385 1.26406 1.53922 1.24726 0.95083 0.97291 1.01053 0.87080 0.80328 0.85086 0.76985 1.21856 1.23269 1.18570 1.18663 0.83111 0.95963 1.37562 0.88368 1.46827 1.09572 1.09068 1.66888 1.23052 0.89887 0.93829 0.91670 0.88929 1.22873 0.99675 0.96075 0.98456 1.22926 0.99742 0.96567 0.97796 1.23201 0.87350 0.92781 0.93742 0.88279 1.22908 0.81323 0.93465 1.00235 0.88772 1.46165 1.23754 1.27374 1.37334 1.16520 0.81515 0.81216 0.82602 1.90898 1.56937 1.61115 1.29437 1.24431 0.96416 0.98620 0.94532 1.22772 0.93915 0.98099 1.02704 1.22653 0.97053 0.96801 0.95119 1.20116 0.96980 0.97683 0.95943 1.23085 1.01907 0.97322 0.97653 1.23053 0.94698 1.01240 1.01059 1.73704 1.04302 1.05076 1.21095 1.84992 1.23295 1.43599 1.43664 1.23466 0.98878 0.94799 1.00915 0.92770 0.92531 0.91888 0.92459 0.92017 0.76150 0.80031 0.85667 0.87972 0.87567 0.87759 0.88406 0.91521 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.95 13.97 55.49 0.78 -27.18 16 2 C 0.02 0.46 5.50 -17.43 -0.10 0.37 16 3 Si 0.87 21.49 24.62 -169.99 -4.18 17.31 16 4 H -0.29 -7.01 6.82 56.52 0.39 -6.62 16 5 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.26 -5.89 4.73 56.52 0.27 -5.63 16 7 C -0.23 -6.28 10.94 -15.06 -0.16 -6.44 16 8 H 0.10 2.91 8.06 -52.49 -0.42 2.48 16 9 N -0.60 -13.82 2.85 -146.09 -0.42 -14.23 16 10 C 0.12 2.42 3.54 -63.06 -0.22 2.20 16 11 H 0.09 2.01 3.47 -51.93 -0.18 1.83 16 12 C -0.13 -2.18 6.42 -24.49 -0.16 -2.34 16 13 C -0.13 -2.13 6.33 -24.24 -0.15 -2.28 16 14 C 0.14 2.60 5.34 -62.80 -0.34 2.27 16 15 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 16 C 0.13 2.06 3.08 -65.10 -0.20 1.86 16 17 H 0.09 1.70 7.75 -51.92 -0.40 1.30 16 18 N -0.70 -9.02 3.61 -52.12 -0.19 -9.21 16 19 C 0.60 8.27 7.81 -12.48 -0.10 8.17 16 20 O -0.51 -8.66 16.67 5.29 0.09 -8.58 16 21 C -0.07 -0.88 7.29 -36.32 -0.26 -1.14 16 22 C -0.15 -1.63 10.26 -38.94 -0.40 -2.03 16 23 C 0.04 0.43 6.94 -82.16 -0.57 -0.14 16 24 C -0.09 -0.67 6.33 -91.77 -0.58 -1.25 16 25 C -0.16 -0.92 10.05 -26.69 -0.27 -1.19 16 26 C -0.16 -1.00 10.24 -26.69 -0.27 -1.27 16 27 N -0.34 -4.09 12.04 33.52 0.40 -3.68 16 28 O 0.12 1.37 11.04 15.58 0.17 1.54 16 29 C -0.14 -2.32 5.99 -23.89 -0.14 -2.46 16 30 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.06 0.76 7.80 -51.93 -0.41 0.35 16 32 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 33 H 0.06 0.79 6.51 -51.93 -0.34 0.45 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.40 4.25 7.88 -40.82 -0.32 3.93 16 36 H 0.18 1.65 7.61 -52.49 -0.40 1.25 16 37 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.58 7.33 -51.93 -0.38 0.20 16 39 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.87 7.32 -51.93 -0.38 0.49 16 43 H 0.08 1.39 6.59 -51.93 -0.34 1.05 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -32.02 345.12 -7.89 -39.91 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.82 Total: 4.61 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -3.93 Total: -5.69 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.57 Total: -54.31 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: 0.26 Total: -7.03 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.18 Total: 17.31 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.02 -7.89 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096088479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.936 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds