Wall clock time and date at job start Tue Mar 31 2020 11:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00419 * 2 1 4 4 H 1.48504 * 109.46867 * 274.48906 * 3 2 1 5 5 H 1.48498 * 109.47158 * 34.48574 * 3 2 1 6 6 H 1.48501 * 109.47340 * 154.49037 * 3 2 1 7 7 C 1.38816 * 119.99908 * 180.27264 * 2 1 3 8 8 H 1.07998 * 119.99736 * 337.95670 * 7 2 1 9 9 N 1.36937 * 120.00149 * 157.96343 * 7 2 1 10 10 C 1.50230 * 130.83911 * 351.74457 * 9 7 2 11 11 H 1.09003 * 115.85815 * 359.68741 * 10 9 7 12 12 C 1.55384 * 101.26415 * 234.04733 * 10 9 7 13 13 C 1.54848 * 103.48735 * 327.25081 * 12 10 9 14 14 C 1.50245 * 130.83806 * 172.09116 * 9 7 2 15 15 H 1.08999 * 115.85790 * 0.31696 * 14 9 7 16 16 C 1.55838 * 101.04872 * 233.92442 * 14 9 7 17 17 H 1.09008 * 110.62352 * 85.55168 * 16 14 9 18 18 N 1.46499 * 110.62392 * 208.56815 * 16 14 9 19 19 C 1.34775 * 120.00661 * 275.33831 * 18 16 14 20 20 O 1.21580 * 119.99583 * 0.02562 * 19 18 16 21 21 C 1.47508 * 120.00056 * 180.02562 * 19 18 16 22 22 C 1.36823 * 126.93866 * 179.71273 * 21 19 18 23 23 C 1.41264 * 103.84459 * 179.97438 * 22 21 19 24 24 C 1.50703 * 126.70833 * 180.09910 * 23 22 21 25 25 C 1.53001 * 117.49547 * 344.00401 * 24 23 22 26 26 C 1.53000 * 117.49642 * 275.34720 * 24 23 22 27 27 N 1.30131 * 106.59139 * 0.33353 * 23 22 21 28 28 O 1.20890 * 111.97470 * 359.78622 * 27 23 22 29 29 C 1.55479 * 103.33060 * 326.97744 * 16 14 9 30 30 H 0.97003 * 119.99524 * 359.72993 * 1 2 3 31 31 H 1.09006 * 110.71962 * 208.69368 * 12 10 9 32 32 H 1.09008 * 110.49914 * 85.70092 * 12 10 9 33 33 H 1.09005 * 110.62874 * 241.38782 * 13 12 10 34 34 H 1.08996 * 110.76637 * 118.42445 * 13 12 10 35 35 H 0.97007 * 119.99319 * 95.34707 * 18 16 14 36 36 H 1.07997 * 128.07977 * 0.03008 * 22 21 19 37 37 H 1.08996 * 115.54924 * 129.67110 * 24 23 22 38 38 H 1.09004 * 117.50061 * 0.02562 * 25 24 23 39 39 H 1.08998 * 117.49467 * 145.01964 * 25 24 23 40 40 H 1.08995 * 117.49918 * 214.97577 * 26 24 23 41 41 H 1.08998 * 117.50152 * 359.97438 * 26 24 23 42 42 H 1.08994 * 110.61165 * 241.58236 * 29 16 14 43 43 H 1.09002 * 110.89301 * 118.54447 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4029 2.1011 -1.3958 5 1 1.4984 2.6234 0.7927 6 1 3.5921 1.4145 0.6030 7 6 2.0102 -1.2022 -0.0057 8 1 1.5294 -2.1049 0.3410 9 7 3.3046 -1.2434 -0.4509 10 6 4.1446 -0.1977 -1.1274 11 1 3.6573 0.7607 -1.3066 12 6 4.6086 -0.9581 -2.4006 13 6 4.7265 -2.4259 -1.9217 14 6 4.3196 -2.3507 -0.4192 15 1 3.9864 -3.2885 0.0253 16 6 5.5132 -1.6415 0.2887 17 1 5.4077 -1.7016 1.3720 18 7 6.7872 -2.2237 -0.1403 19 6 7.2614 -3.3295 0.4669 20 8 6.6315 -3.8442 1.3705 21 6 8.5446 -3.9152 0.0353 22 6 9.1575 -5.0240 0.5520 23 6 10.3394 -5.1440 -0.2124 24 6 11.4004 -6.2047 -0.0702 25 6 11.4024 -7.0338 1.2157 26 6 12.4876 -5.9797 0.9825 27 7 10.3355 -4.1567 -1.0601 28 8 9.3525 -3.4630 -0.9421 29 6 5.3935 -0.1690 -0.1957 30 1 -0.4849 0.8401 0.0040 31 1 5.5751 -0.5864 -2.7409 32 1 3.8626 -0.8706 -3.1906 33 1 5.7515 -2.7822 -2.0244 34 1 4.0406 -3.0687 -2.4735 35 1 7.2896 -1.8131 -0.8614 36 1 8.8169 -5.6596 1.3559 37 1 11.6898 -6.7069 -0.9933 38 1 10.6361 -6.8123 1.9586 39 1 11.6936 -8.0814 1.1386 40 1 13.4922 -6.3342 0.7522 41 1 12.4358 -5.0643 1.5719 42 1 6.2824 0.1248 -0.7539 43 1 5.2297 0.5048 0.6454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096088479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:21 Heat of formation + Delta-G solvation = 97.091212 kcal Electronic energy + Delta-G solvation = -26606.312430 eV Core-core repulsion = 22850.062557 eV Total energy + Delta-G solvation = -3756.249873 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.11953 -41.72995 -40.02519 -38.55380 -35.72478 -34.49576 -34.32098 -33.09844 -31.51246 -30.93908 -29.79245 -26.24081 -25.74326 -25.04967 -23.51325 -22.95877 -22.82742 -22.03310 -21.00183 -20.43462 -19.52578 -18.87153 -18.84711 -17.72465 -17.29404 -17.11780 -16.61396 -16.38753 -15.61524 -15.51363 -15.32835 -15.29096 -14.95429 -14.76643 -14.22629 -13.86115 -13.45994 -13.20867 -13.11357 -12.91916 -12.87187 -12.56676 -12.50432 -12.41477 -12.25618 -12.19714 -11.91869 -11.54694 -11.40051 -11.38030 -11.23756 -11.03820 -10.96407 -10.87504 -10.70942 -10.20818 -9.19947 -8.12427 -5.34120 -0.31798 0.91012 1.29303 1.41268 1.44563 1.51872 1.86138 2.09955 2.45556 2.63926 2.93717 3.00718 3.21499 3.47200 3.66661 3.79587 3.81045 3.86387 3.96363 3.99164 4.05100 4.18523 4.22588 4.29922 4.41522 4.41772 4.52650 4.62908 4.70668 4.73480 4.81738 4.85742 4.97668 4.99433 5.04236 5.09014 5.16036 5.21797 5.30512 5.34525 5.51783 5.59004 6.12485 6.27419 6.61744 6.90920 7.00577 7.49003 8.20712 9.07993 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033550 B = 0.002890 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.374107 B = 9686.747250 C = 9883.776089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.052 4.052 3 Si 0.942 3.058 4 H -0.281 1.281 5 H -0.320 1.320 6 H -0.228 1.228 7 C -0.213 4.213 8 H 0.056 0.944 9 N -0.628 5.628 10 C 0.105 3.895 11 H 0.077 0.923 12 C -0.123 4.123 13 C -0.120 4.120 14 C 0.126 3.874 15 H 0.077 0.923 16 C 0.144 3.856 17 H 0.074 0.926 18 N -0.681 5.681 19 C 0.607 3.393 20 O -0.545 6.545 21 C -0.082 4.082 22 C -0.147 4.147 23 C 0.045 3.955 24 C -0.108 4.108 25 C -0.152 4.152 26 C -0.159 4.159 27 N -0.358 5.358 28 O 0.120 5.880 29 C -0.130 4.130 30 H 0.259 0.741 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.421 0.579 36 H 0.195 0.805 37 H 0.134 0.866 38 H 0.101 0.899 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.116 0.884 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.449 -9.237 -2.021 29.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.245 4.245 3 Si 0.772 3.228 4 H -0.208 1.208 5 H -0.250 1.250 6 H -0.152 1.152 7 C -0.341 4.341 8 H 0.074 0.926 9 N -0.352 5.352 10 C 0.000 4.000 11 H 0.095 0.905 12 C -0.162 4.162 13 C -0.159 4.159 14 C 0.018 3.982 15 H 0.095 0.905 16 C 0.038 3.962 17 H 0.092 0.908 18 N -0.333 5.333 19 C 0.391 3.609 20 O -0.423 6.423 21 C -0.149 4.149 22 C -0.169 4.169 23 C -0.112 4.112 24 C -0.127 4.127 25 C -0.189 4.189 26 C -0.197 4.197 27 N -0.059 5.059 28 O 0.047 5.953 29 C -0.169 4.169 30 H 0.068 0.932 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.259 0.741 36 H 0.212 0.788 37 H 0.152 0.848 38 H 0.119 0.881 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.108 0.892 42 H 0.134 0.866 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 28.521 -9.104 -2.265 30.024 hybrid contribution -1.098 0.637 0.483 1.358 sum 27.423 -8.467 -1.782 28.755 Atomic orbital electron populations 1.69995 1.07397 1.26979 1.57179 1.25472 0.95809 1.01092 1.02143 0.86001 0.79990 0.79520 0.77290 1.20846 1.25005 1.15187 1.18517 0.85415 0.94468 1.35733 0.92572 1.46887 1.08969 1.11726 1.67642 1.23331 0.90308 0.92630 0.93740 0.90549 1.22871 1.01678 0.95302 0.96372 1.22854 1.01283 0.96718 0.95032 1.23366 0.87472 0.91261 0.96069 0.90483 1.22370 0.81657 0.93420 0.98791 0.90755 1.45867 1.22569 1.27160 1.37719 1.16613 0.81711 0.80774 0.81834 1.90894 1.58197 1.62130 1.31046 1.24022 0.96041 0.99244 0.95550 1.23044 0.93713 0.97604 1.02555 1.23063 0.97344 0.96709 0.94134 1.20305 0.97285 0.97910 0.97208 1.23205 1.01434 0.98175 0.96102 1.23135 0.95418 1.01208 0.99915 1.73688 1.04491 1.05783 1.21895 1.84979 1.23184 1.43618 1.43489 1.23400 0.99028 0.94135 1.00324 0.93228 0.87688 0.93247 0.89040 0.93284 0.74055 0.78815 0.84837 0.88054 0.85702 0.86059 0.89197 0.86631 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.46 13.97 21.65 0.30 -62.16 16 2 C -0.05 -3.11 5.50 84.86 0.47 -2.64 16 3 Si 0.94 45.31 24.62 68.60 1.69 47.00 16 4 H -0.28 -12.91 6.82 99.48 0.68 -12.23 16 5 H -0.32 -16.09 7.11 99.48 0.71 -15.39 16 6 H -0.23 -9.63 4.73 99.48 0.47 -9.16 16 7 C -0.21 -12.34 10.94 84.03 0.92 -11.42 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 9 N -0.63 -29.00 2.85 -616.10 -1.76 -30.76 16 10 C 0.10 3.89 3.54 46.07 0.16 4.05 16 11 H 0.08 3.11 3.47 -2.39 -0.01 3.10 16 12 C -0.12 -3.65 6.42 32.05 0.21 -3.44 16 13 C -0.12 -3.59 6.33 32.21 0.20 -3.39 16 14 C 0.13 4.68 5.34 46.23 0.25 4.93 16 15 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 16 C 0.14 4.39 3.08 46.83 0.14 4.53 16 17 H 0.07 2.62 7.75 -2.38 -0.02 2.60 16 18 N -0.68 -15.41 3.61 -437.08 -1.58 -16.98 16 19 C 0.61 15.45 7.81 86.69 0.68 16.13 16 20 O -0.54 -18.11 16.67 -3.97 -0.07 -18.18 16 21 C -0.08 -1.76 7.29 24.38 0.18 -1.58 16 22 C -0.15 -2.81 10.26 22.68 0.23 -2.58 16 23 C 0.04 0.82 6.94 43.56 0.30 1.13 16 24 C -0.11 -1.37 6.33 -11.54 -0.07 -1.44 16 25 C -0.15 -1.29 10.05 30.62 0.31 -0.99 16 26 C -0.16 -1.53 10.24 30.62 0.31 -1.21 16 27 N -0.36 -7.66 12.04 -48.86 -0.59 -8.25 16 28 O 0.12 2.45 11.04 65.93 0.73 3.18 16 29 C -0.13 -3.75 5.99 32.43 0.19 -3.56 16 30 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 31 H 0.10 2.14 7.80 -2.38 -0.02 2.12 16 32 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.09 2.12 6.51 -2.38 -0.02 2.11 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.42 6.74 7.88 -92.70 -0.73 6.01 16 36 H 0.19 3.12 7.61 -2.91 -0.02 3.10 16 37 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.10 0.89 7.33 -2.38 -0.02 0.87 16 39 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.12 2.25 7.32 -2.39 -0.02 2.23 16 43 H 0.07 2.20 6.59 -2.39 -0.02 2.19 16 Total: -1.00 -74.58 345.12 3.27 -71.31 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.06 Total: 16.32 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 4.48 Total: -1.48 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -3.62 Total: -118.15 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.66 Total: -15.00 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.69 Total: 47.00 kcal Total: -74.58 3.27 -71.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096088479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.401 kcal (2) G-P(sol) polarization free energy of solvation -74.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds