Wall clock time and date at job start Tue Mar 31 2020 11:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99917 * 2 1 4 4 H 1.48497 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46750 * 300.00077 * 3 2 1 6 6 H 1.48499 * 109.47085 * 59.99819 * 3 2 1 7 7 C 1.38817 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99929 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99797 * 0.02562 * 7 2 1 10 10 C 1.50236 * 130.83814 * 359.97438 * 9 7 2 11 11 H 1.09002 * 115.85996 * 0.35501 * 10 9 7 12 12 C 1.55844 * 101.75136 * 234.15641 * 10 9 7 13 13 C 1.56683 * 102.59873 * 327.30931 * 12 10 9 14 14 C 1.50236 * 130.83637 * 179.97438 * 9 7 2 15 15 H 1.08995 * 116.45929 * 0.02562 * 14 9 7 16 16 C 1.55847 * 101.05360 * 233.96610 * 14 9 7 17 17 H 1.09000 * 110.62769 * 208.57466 * 16 14 9 18 18 N 1.46504 * 110.62193 * 85.71343 * 16 14 9 19 19 C 1.34777 * 119.99451 * 155.00417 * 18 16 14 20 20 O 1.21680 * 120.00159 * 359.97438 * 19 18 16 21 21 C 1.46721 * 119.99392 * 179.97438 * 19 18 16 22 22 C 1.36342 * 126.64659 * 0.02562 * 21 19 18 23 23 N 1.33697 * 107.45110 * 179.97438 * 22 21 19 24 24 C 1.30619 * 108.99738 * 359.97438 * 23 22 21 25 25 C 1.50696 * 125.42172 * 180.02562 * 24 23 22 26 26 C 1.52999 * 117.49974 * 8.59771 * 25 24 23 27 27 C 1.53001 * 60.00241 * 252.50918 * 26 25 24 28 28 O 1.33661 * 109.15228 * 359.75863 * 24 23 22 29 29 C 1.54848 * 103.44507 * 327.06781 * 16 14 9 30 30 H 0.96993 * 120.00439 * 0.02562 * 1 2 3 31 31 H 1.09006 * 110.62417 * 85.31791 * 12 10 9 32 32 H 1.08999 * 110.63099 * 208.17827 * 12 10 9 33 33 H 1.09006 * 110.35381 * 241.21731 * 13 12 10 34 34 H 1.08999 * 110.75089 * 118.29898 * 13 12 10 35 35 H 0.96995 * 119.99880 * 334.99707 * 18 16 14 36 36 H 1.07996 * 126.27449 * 359.95567 * 22 21 19 37 37 H 1.09000 * 115.55338 * 154.31099 * 25 24 23 38 38 H 1.09001 * 117.49941 * 0.02562 * 26 25 24 39 39 H 1.09001 * 117.49554 * 145.01761 * 26 25 24 40 40 H 1.08990 * 117.50191 * 252.50705 * 27 26 25 41 41 H 1.09006 * 117.49137 * 107.48975 * 27 26 25 42 42 H 1.08994 * 110.63250 * 118.48805 * 29 16 14 43 43 H 1.09005 * 110.62482 * 241.35329 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1499 -2.6706 0.0005 11 1 -0.8013 -1.7966 -0.0055 12 6 -0.2936 -3.6078 1.2374 13 6 1.0671 -4.3846 1.2374 14 6 1.8189 -3.8071 0.0005 15 1 2.9000 -3.9455 0.0010 16 6 1.0671 -4.3848 -1.2364 17 1 0.8932 -5.4540 -1.1152 18 7 1.8186 -4.1218 -2.4661 19 6 1.6538 -4.9193 -3.5401 20 8 0.8811 -5.8578 -3.4881 21 6 2.4061 -4.6556 -4.7719 22 6 3.3019 -3.6488 -4.9785 23 7 3.7574 -3.7680 -6.2299 24 6 3.1843 -4.7968 -6.7948 25 6 3.4295 -5.2679 -8.2050 26 6 4.5720 -4.6098 -8.9811 27 6 3.1195 -4.2902 -9.3404 28 8 2.3502 -5.3687 -5.9209 29 6 -0.2740 -3.6105 -1.2365 30 1 -0.4850 0.8399 -0.0004 31 1 -0.4021 -3.0236 2.1512 32 1 -1.1404 -4.2825 1.1116 33 1 0.8932 -5.4539 1.1163 34 1 1.6248 -4.1865 2.1527 35 1 2.4347 -3.3738 -2.5074 36 1 3.5905 -2.8933 -4.2628 37 1 3.2411 -6.3260 -8.3867 38 1 5.1467 -3.8364 -8.4715 39 1 5.1358 -5.2351 -9.6734 40 1 2.7278 -4.7051 -10.2690 41 1 2.7384 -3.3061 -9.0672 42 1 -0.3814 -3.0285 -2.1517 43 1 -1.1131 -4.2961 -1.1181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097245357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:54 Heat of formation + Delta-G solvation = 44.783531 kcal Electronic energy + Delta-G solvation = -26528.811341 eV Core-core repulsion = 22770.293237 eV Total energy + Delta-G solvation = -3758.518104 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.61952 -41.31607 -39.83209 -38.26388 -36.19034 -35.33966 -34.42645 -31.87392 -30.95273 -30.29205 -29.23282 -26.31119 -25.84384 -24.58955 -23.32692 -23.05562 -21.73438 -21.61727 -21.54125 -20.44613 -19.24452 -18.83665 -18.14829 -17.96214 -17.40651 -16.77407 -16.23450 -15.96459 -15.80543 -15.62518 -15.50324 -15.21023 -14.62677 -14.38370 -13.71931 -13.67361 -13.36972 -12.93002 -12.90682 -12.80778 -12.78190 -12.71228 -12.45518 -12.20876 -12.08836 -11.95235 -11.89822 -11.87344 -11.68885 -11.57431 -11.41631 -11.05170 -10.94734 -10.80496 -10.27448 -9.89994 -8.86986 -7.74674 -5.14743 -0.39211 0.93486 1.16261 1.50070 1.51809 1.59958 1.91759 2.32065 2.51228 2.71840 2.92285 3.38186 3.42786 3.45463 3.66690 3.76420 3.93594 3.96320 3.97574 4.04500 4.27766 4.34166 4.43068 4.46489 4.52224 4.60995 4.66215 4.76040 4.82943 4.86641 4.89819 4.95853 5.05405 5.11040 5.16438 5.18017 5.23906 5.38967 5.45723 5.56330 5.67815 5.89767 6.24267 6.28936 6.43310 6.93385 7.07329 7.74057 8.58926 9.32632 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014057 B = 0.003625 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.432270 B = 7722.319647 C = 9166.998576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.066 4.066 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.300 1.300 6 H -0.301 1.301 7 C -0.212 4.212 8 H 0.089 0.911 9 N -0.609 5.609 10 C 0.140 3.860 11 H 0.115 0.885 12 C -0.133 4.133 13 C -0.119 4.119 14 C 0.128 3.872 15 H 0.109 0.891 16 C 0.140 3.860 17 H 0.095 0.905 18 N -0.678 5.678 19 C 0.600 3.400 20 O -0.570 6.570 21 C -0.123 4.123 22 C 0.043 3.957 23 N -0.502 5.502 24 C 0.248 3.752 25 C -0.109 4.109 26 C -0.130 4.130 27 C -0.144 4.144 28 O -0.186 6.186 29 C -0.136 4.136 30 H 0.244 0.756 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.216 0.784 37 H 0.158 0.842 38 H 0.097 0.903 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.088 0.912 42 H 0.035 0.965 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.851 -10.743 -13.277 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.228 1.228 6 H -0.229 1.229 7 C -0.340 4.340 8 H 0.107 0.893 9 N -0.330 5.330 10 C 0.033 3.967 11 H 0.132 0.868 12 C -0.173 4.173 13 C -0.158 4.158 14 C 0.021 3.979 15 H 0.127 0.873 16 C 0.034 3.966 17 H 0.112 0.888 18 N -0.328 5.328 19 C 0.386 3.614 20 O -0.451 6.451 21 C -0.178 4.178 22 C -0.100 4.100 23 N -0.231 5.231 24 C 0.044 3.956 25 C -0.128 4.128 26 C -0.167 4.167 27 C -0.182 4.182 28 O -0.072 6.072 29 C -0.176 4.176 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.248 0.752 36 H 0.233 0.767 37 H 0.175 0.825 38 H 0.116 0.884 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.106 0.894 42 H 0.054 0.946 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.770 -10.755 -13.519 18.942 hybrid contribution -0.341 1.171 0.705 1.409 sum 7.428 -9.584 -12.814 17.642 Atomic orbital electron populations 1.69719 1.06221 1.24652 1.59141 1.25398 0.96242 1.00271 1.03933 0.85103 0.78412 0.80277 0.76096 1.18835 1.22778 1.22880 1.19407 0.90870 0.82778 1.40994 0.89312 1.46708 1.02160 0.99623 1.84500 1.23556 0.86786 0.95183 0.91144 0.86775 1.23283 0.97178 0.98061 0.98732 1.23137 0.95935 0.99008 0.97744 1.23378 0.97410 0.84614 0.92498 0.87315 1.22671 0.91840 0.99143 0.82938 0.88760 1.45556 1.44766 1.30832 1.11615 1.16451 0.80956 0.82488 0.81489 1.90801 1.38913 1.31814 1.83604 1.22644 1.07675 0.98663 0.88847 1.24105 0.93597 0.97999 0.94337 1.70347 1.26720 1.18552 1.07463 1.26438 0.86395 0.88563 0.94193 1.20594 1.10759 1.01271 0.80215 1.23232 0.91098 1.02293 1.00117 1.23271 0.99207 0.98569 0.97106 1.84442 1.53201 1.49031 1.20520 1.23365 0.96548 0.98154 0.99584 0.94594 0.94276 0.90843 0.89896 0.91895 0.75216 0.76740 0.82495 0.88418 0.84271 0.84359 0.89390 0.94641 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.62 10.46 21.65 0.23 -53.39 16 2 C -0.07 -3.48 5.50 84.86 0.47 -3.01 16 3 Si 0.97 43.53 29.55 68.60 2.03 45.56 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.21 -10.57 10.59 84.04 0.89 -9.68 16 8 H 0.09 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.61 -27.33 2.99 -615.24 -1.84 -29.17 16 10 C 0.14 6.21 4.67 46.23 0.22 6.42 16 11 H 0.11 6.06 5.52 -2.39 -0.01 6.05 16 12 C -0.13 -4.94 6.58 32.87 0.22 -4.72 16 13 C -0.12 -3.80 6.49 32.86 0.21 -3.59 16 14 C 0.13 4.49 5.06 46.23 0.23 4.73 16 15 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 16 C 0.14 4.85 2.80 46.61 0.13 4.98 16 17 H 0.09 3.17 7.22 -2.39 -0.02 3.15 16 18 N -0.68 -22.40 5.07 -438.82 -2.22 -24.62 16 19 C 0.60 21.29 7.79 86.46 0.67 21.97 16 20 O -0.57 -23.89 16.75 -0.60 -0.01 -23.90 16 21 C -0.12 -3.93 7.22 24.05 0.17 -3.76 16 22 C 0.04 1.18 11.37 83.97 0.95 2.14 16 23 N -0.50 -13.77 10.79 -302.89 -3.27 -17.04 16 24 C 0.25 6.39 7.87 88.29 0.69 7.08 16 25 C -0.11 -1.74 6.33 -11.54 -0.07 -1.81 16 26 C -0.13 -1.49 10.13 30.59 0.31 -1.18 16 27 C -0.14 -1.72 10.23 30.60 0.31 -1.41 16 28 O -0.19 -5.89 10.79 -3.43 -0.04 -5.92 16 29 C -0.14 -5.39 6.22 32.21 0.20 -5.19 16 30 H 0.24 13.69 8.31 -92.71 -0.77 12.92 16 31 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.07 2.37 7.81 -2.39 -0.02 2.35 16 33 H 0.08 2.20 7.82 -2.38 -0.02 2.18 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.41 12.66 7.56 -92.71 -0.70 11.96 16 36 H 0.22 4.83 7.44 -2.91 -0.02 4.81 16 37 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.10 1.46 7.87 -2.39 -0.02 1.44 16 39 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.03 1.55 7.98 -2.39 -0.02 1.54 16 43 H 0.07 2.55 7.81 -2.38 -0.02 2.53 16 Total: -1.00 -68.14 356.74 0.83 -67.31 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.34 Total: 28.20 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 5.61 Total: 12.97 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -7.11 Total: -124.22 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.05 Total: -29.82 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -68.14 0.83 -67.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097245357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.094 kcal (2) G-P(sol) polarization free energy of solvation -68.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds