Wall clock time and date at job start Tue Mar 31 2020 11:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38359 * 119.40911 * 2 1 4 4 C 1.38338 * 119.46060 * 180.02562 * 3 2 1 5 5 C 1.39995 * 118.34848 * 359.97438 * 4 3 2 6 6 C 1.47517 * 120.59915 * 180.02562 * 5 4 3 7 7 O 1.21585 * 120.00513 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99560 * 359.97438 * 6 5 4 9 9 C 1.46507 * 119.99455 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.68552 * 32.01432 * 9 8 6 11 11 C 1.54853 * 110.62456 * 269.02314 * 9 8 6 12 12 C 1.55847 * 103.44638 * 241.51415 * 11 9 8 13 13 H 1.08997 * 115.56393 * 158.81308 * 12 11 9 14 14 C 1.55847 * 105.06162 * 288.17626 * 12 11 9 15 15 C 1.55877 * 103.52933 * 72.43206 * 14 12 11 16 16 C 1.55846 * 102.97150 * 359.11585 * 15 14 12 17 17 H 1.09002 * 115.56047 * 159.69072 * 16 15 14 18 18 N 1.50240 * 101.04996 * 33.81862 * 16 15 14 19 19 C 1.36936 * 130.84094 * 125.33662 * 18 16 15 20 20 H 1.07998 * 119.99652 * 0.02562 * 19 18 16 21 21 C 1.38806 * 119.99943 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00533 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99635 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47479 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46900 * 119.99934 * 23 21 19 26 26 H 1.48502 * 109.47195 * 239.99791 * 23 21 19 27 27 C 1.40277 * 118.80430 * 0.27394 * 5 4 3 28 28 O 1.35428 * 119.80331 * 179.72239 * 27 5 4 29 29 N 1.31884 * 119.40975 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47780 * 89.99743 * 1 2 3 31 31 H 1.09003 * 109.46752 * 210.00157 * 1 2 3 32 32 H 1.09004 * 109.46903 * 329.99395 * 1 2 3 33 33 H 1.07998 * 120.27281 * 359.97438 * 3 2 1 34 34 H 1.07992 * 120.82753 * 179.97438 * 4 3 2 35 35 H 0.97001 * 120.00656 * 359.97438 * 8 6 5 36 36 H 1.08997 * 110.62526 * 123.02521 * 11 9 8 37 37 H 1.09001 * 110.62973 * 0.02562 * 11 9 8 38 38 H 1.09003 * 110.62865 * 190.31234 * 14 12 11 39 39 H 1.08998 * 110.62667 * 313.17604 * 14 12 11 40 40 H 1.09006 * 110.09627 * 241.13600 * 15 14 12 41 41 H 1.09001 * 111.60505 * 117.80684 * 15 14 12 42 42 H 0.97003 * 120.00245 * 179.97438 * 22 21 19 43 43 H 0.96704 * 113.99762 * 90.00035 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.2356 -0.0249 -0.0005 6 6 5.7097 -0.0815 -0.0005 7 8 6.2768 -1.1570 -0.0010 8 7 6.4278 1.0590 -0.0010 9 6 7.8918 1.0028 -0.0016 10 1 8.2431 0.1239 -0.5421 11 6 8.4383 1.0069 1.4473 12 6 9.2932 2.3085 1.5084 13 1 9.4782 2.7032 2.5074 14 6 10.5552 2.0051 0.6458 15 6 10.0101 2.0163 -0.8145 16 6 8.4908 2.3026 -0.6185 17 1 7.9690 2.6920 -1.4927 18 7 8.5202 3.2045 0.5827 19 6 8.0018 4.4572 0.7748 20 1 7.4667 4.9485 -0.0243 21 6 8.1641 5.0956 1.9967 22 7 8.8158 4.4967 2.9708 23 14 7.4574 6.8049 2.2584 24 1 6.7749 7.2537 1.0183 25 1 6.4801 6.7706 3.3761 26 1 8.5549 7.7489 2.5894 27 6 3.4758 -1.2041 -0.0058 28 8 4.0991 -2.4064 -0.0116 29 7 2.1546 -1.1489 0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5140 33 1 1.6412 2.1376 -0.0004 34 1 4.1223 2.1344 -0.0010 35 1 5.9754 1.9171 -0.0018 36 1 9.0608 0.1300 1.6253 37 1 7.6202 1.0503 2.1662 38 1 11.3036 2.7876 0.7717 39 1 10.9720 1.0317 0.9043 40 1 10.1605 1.0412 -1.2779 41 1 10.4752 2.8016 -1.4104 42 1 8.9295 4.9430 3.8245 43 1 4.2803 -2.7597 0.8702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097929495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:35 Heat of formation + Delta-G solvation = 6.280927 kcal Electronic energy + Delta-G solvation = -26933.191715 eV Core-core repulsion = 23173.004013 eV Total energy + Delta-G solvation = -3760.187702 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88776 -39.53969 -38.16269 -37.17998 -33.99559 -33.06735 -32.45885 -31.73479 -29.14275 -29.01802 -28.35082 -27.26888 -24.29550 -23.50922 -23.15769 -21.55141 -20.04854 -19.85670 -18.85107 -18.59861 -17.45926 -17.05445 -16.92048 -15.84148 -15.51183 -14.94964 -14.76495 -14.60332 -14.24102 -14.02198 -13.85671 -13.73223 -13.24651 -12.95833 -12.63026 -12.45060 -12.26067 -12.08558 -11.87538 -11.64484 -11.29263 -11.15367 -10.98349 -10.96734 -10.53990 -10.40388 -10.13436 -10.04987 -10.01792 -9.93079 -9.57446 -9.26974 -9.17007 -9.02456 -8.95487 -8.47174 -7.00390 -5.80439 -3.19742 0.50291 0.97917 2.94500 3.30709 3.33349 3.35955 3.39196 3.54703 3.76525 4.34830 4.36910 4.52546 4.71552 4.85745 5.07839 5.17570 5.22829 5.30267 5.31603 5.37613 5.60270 5.65159 5.69966 5.78328 5.83089 5.88008 6.03071 6.07959 6.11573 6.26372 6.28411 6.38200 6.46146 6.56366 6.70447 6.78884 6.91619 7.07277 7.28086 7.41598 7.46547 7.72253 7.73997 7.92837 8.11805 8.54214 9.01277 9.64584 10.45952 11.28522 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.004238 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.382897 B = 6604.763949 C = 8199.532569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.169 3.831 3 C -0.191 4.191 4 C -0.024 4.024 5 C -0.204 4.204 6 C 0.557 3.443 7 O -0.532 6.532 8 N -0.700 5.700 9 C 0.130 3.870 10 H 0.082 0.918 11 C -0.143 4.143 12 C 0.154 3.846 13 H 0.153 0.847 14 C -0.138 4.138 15 C -0.127 4.127 16 C 0.124 3.876 17 H 0.086 0.914 18 N -0.592 5.592 19 C -0.215 4.215 20 H 0.079 0.921 21 C -0.009 4.009 22 N -0.918 5.918 23 Si 0.914 3.086 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.371 3.629 28 O -0.460 6.460 29 N -0.512 5.512 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.400 0.600 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.254 0.746 43 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.043 -6.617 -4.710 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.030 3.970 3 C -0.211 4.211 4 C -0.050 4.050 5 C -0.211 4.211 6 C 0.342 3.658 7 O -0.410 6.410 8 N -0.350 5.350 9 C 0.024 3.976 10 H 0.100 0.900 11 C -0.183 4.183 12 C 0.047 3.953 13 H 0.170 0.830 14 C -0.178 4.178 15 C -0.167 4.167 16 C 0.016 3.984 17 H 0.104 0.896 18 N -0.313 5.313 19 C -0.343 4.343 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.566 5.566 23 Si 0.745 3.255 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.191 3.809 28 O -0.267 6.267 29 N -0.232 5.232 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.236 0.764 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -11.105 -7.846 -5.125 14.531 hybrid contribution 0.006 1.999 0.599 2.087 sum -11.099 -5.848 -4.526 13.336 Atomic orbital electron populations 1.20810 0.88269 1.03884 1.03487 1.21239 0.96982 0.87278 0.91459 1.21912 0.94543 0.99571 1.05034 1.21856 0.94602 0.97446 0.91047 1.21256 0.95550 0.94256 1.10041 1.17786 0.85670 0.84800 0.77504 1.90771 1.71677 1.28504 1.50029 1.45923 1.07907 1.07963 1.73191 1.22636 0.77669 0.99263 0.98055 0.90007 1.23470 1.00240 0.99533 0.95098 1.23764 0.87464 0.86292 0.97779 0.82980 1.23234 0.99797 0.99189 0.95538 1.23032 0.96869 0.99419 0.97376 1.23169 0.94391 0.89382 0.91495 0.89571 1.46562 1.62438 1.14113 1.08172 1.19040 1.27955 0.89845 0.97490 0.90369 1.24698 1.01063 0.98672 0.96085 1.69469 1.45980 1.37119 1.04020 0.86017 0.78199 0.83769 0.77562 1.20602 1.21842 1.21768 1.19122 0.86004 0.85187 0.90604 1.84706 1.76418 1.31818 1.33783 1.67117 1.09433 1.30432 1.16255 0.89911 0.90169 0.90146 0.83770 0.83547 0.76421 0.92720 0.92275 0.92713 0.93194 0.93022 0.92246 0.93556 0.73623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.16 36.00 0.37 -0.41 16 2 C 0.17 1.87 6.78 -82.53 -0.56 1.31 16 3 C -0.19 -1.96 9.71 -39.50 -0.38 -2.35 16 4 C -0.02 -0.29 9.64 -38.89 -0.37 -0.66 16 5 C -0.20 -3.04 5.90 -104.69 -0.62 -3.65 16 6 C 0.56 9.63 7.77 -12.48 -0.10 9.53 16 7 O -0.53 -10.55 14.84 -16.48 -0.24 -10.79 16 8 N -0.70 -11.93 5.03 -52.43 -0.26 -12.20 16 9 C 0.13 2.39 2.82 -65.43 -0.18 2.20 16 10 H 0.08 1.52 7.26 -51.93 -0.38 1.15 16 11 C -0.14 -2.86 6.23 -24.23 -0.15 -3.01 16 12 C 0.15 3.41 4.72 -62.80 -0.30 3.11 16 13 H 0.15 3.89 5.52 -51.93 -0.29 3.60 16 14 C -0.14 -2.68 6.46 -23.67 -0.15 -2.83 16 15 C -0.13 -2.26 6.53 -23.68 -0.15 -2.42 16 16 C 0.12 2.36 5.01 -62.80 -0.31 2.04 16 17 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 18 N -0.59 -13.57 2.98 -145.81 -0.43 -14.00 16 19 C -0.22 -5.43 10.59 -15.06 -0.16 -5.59 16 20 H 0.08 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.92 -25.07 10.46 55.49 0.58 -24.49 16 23 Si 0.91 20.74 29.55 -169.99 -5.02 15.71 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.37 5.55 7.77 -16.61 -0.13 5.42 16 28 O -0.46 -6.84 11.66 -39.74 -0.46 -7.30 16 29 N -0.51 -7.06 10.28 -9.21 -0.09 -7.16 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 33 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.15 1.60 6.51 -52.49 -0.34 1.26 16 35 H 0.40 6.47 6.76 -40.82 -0.28 6.19 16 36 H 0.05 1.02 7.82 -51.93 -0.41 0.62 16 37 H 0.06 1.27 7.98 -51.93 -0.41 0.86 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 40 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 43 H 0.40 4.38 9.06 45.56 0.41 4.80 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -31.44 351.27 -8.96 -40.40 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -5.00 Total: 12.18 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -3.31 Total: 2.35 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.21 Total: -57.85 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.71 Total: -18.09 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.44 -8.96 -40.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097929495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.682 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds