Wall clock time and date at job start Tue Mar 31 2020 11:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86799 * 119.99602 * 2 1 4 4 H 1.48505 * 109.47027 * 239.99281 * 3 2 1 5 5 H 1.48493 * 109.47491 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46998 * 119.99700 * 3 2 1 7 7 C 1.38797 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99682 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00269 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99892 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46948 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99584 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99971 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99814 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47378 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.47134 * 305.00523 * 15 14 13 17 17 C 1.53001 * 109.46716 * 65.00257 * 15 14 13 18 18 O 1.42909 * 109.47018 * 187.66430 * 17 15 14 19 19 C 1.52996 * 109.47631 * 185.00631 * 15 14 13 20 20 C 1.52996 * 109.47457 * 172.47099 * 19 15 14 21 21 C 1.53177 * 109.53942 * 297.08208 * 20 19 15 22 22 C 1.53111 * 109.15679 * 183.23913 * 21 20 19 23 23 O 1.42905 * 109.48413 * 57.47580 * 22 21 20 24 24 C 1.42906 * 114.09764 * 298.88653 * 23 22 21 25 25 C 1.53093 * 109.41163 * 61.15896 * 24 23 22 26 26 H 0.96992 * 120.00327 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47287 * 60.00599 * 10 9 7 28 28 H 1.08995 * 109.47200 * 300.00266 * 10 9 7 29 29 H 0.96998 * 120.00235 * 0.02562 * 13 11 10 30 30 H 1.09003 * 109.47211 * 60.00988 * 14 13 11 31 31 H 1.08995 * 109.47631 * 300.00495 * 14 13 11 32 32 H 1.08999 * 109.47218 * 307.66515 * 17 15 14 33 33 H 1.09005 * 109.47352 * 67.66626 * 17 15 14 34 34 H 0.96700 * 113.99902 * 179.97438 * 18 17 15 35 35 H 1.09009 * 109.46544 * 292.46643 * 19 15 14 36 36 H 1.09002 * 109.47121 * 52.46506 * 19 15 14 37 37 H 1.09002 * 109.54489 * 57.25817 * 20 19 15 38 38 H 1.08997 * 109.52626 * 303.05853 * 21 20 19 39 39 H 1.08998 * 109.52334 * 63.25123 * 21 20 19 40 40 H 1.08994 * 109.40483 * 297.49379 * 22 21 20 41 41 H 1.08996 * 109.49147 * 177.50882 * 22 21 20 42 42 H 1.08990 * 109.47975 * 301.17905 * 24 23 22 43 43 H 1.08993 * 109.48895 * 181.14583 * 24 23 22 44 44 H 1.09000 * 109.52141 * 182.47948 * 25 24 23 45 45 H 1.09001 * 109.57553 * 62.32903 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3027 -0.0001 12 8 0.7913 -5.5023 -0.0010 13 7 2.8444 -6.3430 -0.0007 14 6 2.3307 -7.7150 -0.0008 15 6 3.5027 -8.6985 -0.0009 16 1 4.1599 -8.4804 -0.8427 17 6 4.2852 -8.5594 1.3065 18 8 5.4770 -9.3446 1.2341 19 6 2.9698 -10.1271 -0.1268 20 6 4.1408 -11.0935 -0.3156 21 6 4.8674 -10.7685 -1.6243 22 6 5.9863 -11.7902 -1.8449 23 8 5.4325 -13.1074 -1.8616 24 6 4.7828 -13.4828 -0.6454 25 6 3.6143 -12.5306 -0.3778 26 1 -0.4850 0.8399 -0.0004 27 1 3.1246 -3.7313 0.8906 28 1 3.1246 -3.7312 -0.8894 29 1 3.8011 -6.1834 -0.0004 30 1 1.7217 -7.8749 -0.8906 31 1 1.7224 -7.8753 0.8893 32 1 4.5483 -7.5132 1.4629 33 1 3.6706 -8.9075 2.1367 34 1 6.0240 -9.3036 2.0305 35 1 2.4225 -10.3917 0.7780 36 1 2.3030 -10.1917 -0.9867 37 1 4.8334 -10.9948 0.5203 38 1 4.1624 -10.8174 -2.4542 39 1 5.2933 -9.7670 -1.5655 40 1 6.7129 -11.7116 -1.0363 41 1 6.4785 -11.5906 -2.7966 42 1 5.4937 -13.4264 0.1788 43 1 4.4080 -14.5025 -0.7331 44 1 3.1447 -12.7880 0.5716 45 1 2.8824 -12.6159 -1.1810 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116801950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:25 Heat of formation + Delta-G solvation = -157.748727 kcal Electronic energy + Delta-G solvation = -24258.901564 eV Core-core repulsion = 20594.752202 eV Total energy + Delta-G solvation = -3664.149361 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.05188 -39.22433 -37.91392 -35.62045 -34.55479 -32.44412 -32.05298 -31.32035 -29.35592 -27.24556 -25.75593 -25.35130 -23.92093 -23.16674 -20.73281 -20.43778 -19.96870 -18.04537 -17.56513 -16.49143 -16.45043 -16.28486 -16.07071 -15.68139 -15.26278 -14.95852 -14.81717 -14.61615 -14.29832 -13.95136 -13.91973 -13.31757 -13.08084 -12.91026 -12.79296 -12.62475 -12.37689 -12.07455 -11.79402 -11.68833 -11.55681 -11.17304 -11.05963 -11.05084 -10.87594 -10.78445 -10.63869 -10.49367 -9.95257 -9.84458 -9.74469 -9.41845 -9.07900 -8.92385 -8.25893 -6.51823 -6.22888 -3.93806 3.00927 3.07003 3.22264 3.26401 3.29789 3.61411 3.68429 3.77653 4.19121 4.33460 4.39387 4.60627 4.64690 4.74235 4.77235 4.94340 4.97727 5.09421 5.12059 5.14902 5.21259 5.24649 5.29221 5.36959 5.41359 5.44924 5.53252 5.60431 5.65430 5.72562 5.75224 5.78894 5.85483 5.86972 5.89730 6.07356 6.11261 6.33285 6.56803 6.92990 7.25245 7.57706 7.65854 8.33533 8.57977 9.22166 10.84467 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032696 B = 0.002049 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.177486 B =13660.530430 C =13915.909263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.517 6.517 13 N -0.741 5.741 14 C 0.127 3.873 15 C -0.101 4.101 16 H 0.088 0.912 17 C 0.079 3.921 18 O -0.565 6.565 19 C -0.102 4.102 20 C -0.096 4.096 21 C -0.146 4.146 22 C 0.062 3.938 23 O -0.387 6.387 24 C 0.062 3.938 25 C -0.153 4.153 26 H 0.269 0.731 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.397 0.603 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.375 0.625 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.089 0.911 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.289 -24.968 1.697 28.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.391 6.391 13 N -0.396 5.396 14 C 0.003 3.997 15 C -0.120 4.120 16 H 0.107 0.893 17 C 0.001 3.999 18 O -0.370 6.370 19 C -0.140 4.140 20 C -0.114 4.114 21 C -0.184 4.184 22 C -0.015 4.015 23 O -0.306 6.306 24 C -0.014 4.014 25 C -0.191 4.191 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.231 0.769 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.222 0.778 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.863 -25.447 0.943 27.685 hybrid contribution 2.527 1.769 0.813 3.190 sum 13.390 -23.679 1.756 27.259 Atomic orbital electron populations 1.70004 1.05946 1.27590 1.46728 1.24997 0.95041 0.99038 0.94529 0.86220 0.79232 0.81224 0.78794 1.19933 1.20800 1.19947 1.22823 0.94864 0.91663 1.59111 0.90985 1.85403 1.04901 0.96310 1.96723 1.23533 1.06587 0.95423 1.04884 1.20319 0.86531 0.86298 0.75142 1.90708 1.15362 1.85622 1.47391 1.46067 1.09900 1.05537 1.78088 1.21263 0.95296 0.80352 1.02821 1.21495 0.96499 0.95665 0.98315 0.89333 1.22264 0.86129 0.94290 0.97228 1.86495 1.36004 1.70729 1.43821 1.21542 0.97568 0.92667 1.02205 1.21439 0.97637 0.92971 0.99346 1.22217 0.98489 0.99704 0.97951 1.22566 0.94841 0.82208 1.01861 1.87915 1.74239 1.31974 1.36504 1.22535 0.93653 0.98254 0.87006 1.22272 0.98654 0.95854 1.02304 0.92110 0.89290 0.89225 0.76870 0.90952 0.91469 0.93353 0.93358 0.77793 0.91694 0.91617 0.87693 0.91770 0.90498 0.93190 0.89312 0.93370 0.89294 0.91187 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 11 C 0.53 9.73 7.85 -10.98 -0.09 9.64 16 12 O -0.52 -11.64 15.86 5.55 0.09 -11.55 16 13 N -0.74 -9.44 5.20 -60.30 -0.31 -9.76 16 14 C 0.13 1.40 5.06 -4.04 -0.02 1.37 16 15 C -0.10 -0.81 2.10 -90.62 -0.19 -1.00 16 16 H 0.09 0.74 6.24 -51.93 -0.32 0.42 16 17 C 0.08 0.55 6.34 37.16 0.24 0.79 16 18 O -0.56 -3.50 10.44 -35.23 -0.37 -3.87 16 19 C -0.10 -0.78 4.17 -26.74 -0.11 -0.89 16 20 C -0.10 -0.71 1.88 -90.44 -0.17 -0.88 16 21 C -0.15 -1.16 5.06 -26.58 -0.13 -1.29 16 22 C 0.06 0.50 6.84 37.22 0.25 0.75 16 23 O -0.39 -3.77 10.77 -35.23 -0.38 -4.15 16 24 C 0.06 0.46 6.84 37.21 0.25 0.72 16 25 C -0.15 -1.10 5.42 -26.59 -0.14 -1.24 16 26 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 28 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.40 3.97 7.66 -40.82 -0.31 3.66 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.35 7.03 -51.93 -0.36 -0.02 16 33 H 0.05 0.33 8.10 -51.93 -0.42 -0.09 16 34 H 0.37 1.02 9.12 45.56 0.42 1.44 16 35 H 0.06 0.48 8.10 -51.92 -0.42 0.06 16 36 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 37 H 0.11 0.82 5.22 -51.93 -0.27 0.55 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.61 6.52 -51.93 -0.34 0.27 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -35.05 371.45 -8.22 -43.27 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.65 Total: 1.18 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 0.31 Total: -7.80 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.42 Total: -35.13 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.66 Total: -19.57 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.05 -8.22 -43.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116801950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.477 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds