Wall clock time and date at job start Tue Mar 31 2020 12:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35462 * 119.62285 * 2 1 4 4 C 1.41183 * 119.17592 * 180.02562 * 3 2 1 5 5 N 1.34679 * 120.73488 * 180.26849 * 4 3 2 6 6 C 1.32549 * 119.99828 * 175.44079 * 5 4 3 7 7 O 1.21920 * 120.00148 * 65.43133 * 6 5 4 8 8 C 1.49102 * 120.00400 * 245.42796 * 6 5 4 9 9 O 1.21402 * 120.00029 * 359.61762 * 8 6 5 10 10 N 1.34777 * 120.00351 * 179.62084 * 8 6 5 11 11 C 1.46504 * 119.99625 * 354.59950 * 10 8 6 12 12 C 1.50690 * 109.47221 * 83.95617 * 11 10 8 13 13 H 1.07996 * 120.00223 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99574 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00116 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47130 * 90.00034 * 16 14 12 18 18 H 1.48493 * 109.46954 * 209.99813 * 16 14 12 19 19 H 1.48497 * 109.47124 * 329.99967 * 16 14 12 20 20 C 1.46495 * 120.00117 * 174.60046 * 10 8 6 21 21 C 1.52995 * 109.47496 * 94.81510 * 20 10 8 22 22 C 1.53006 * 117.49955 * 243.62400 * 21 20 10 23 23 C 1.52995 * 59.99804 * 252.50518 * 22 21 20 24 24 C 1.41182 * 118.52692 * 359.97438 * 4 3 2 25 25 C 1.35465 * 119.17749 * 0.02562 * 24 4 3 26 26 N 1.34786 * 119.61988 * 180.02562 * 2 1 3 27 27 H 0.97004 * 119.19931 * 359.95714 * 26 2 1 28 28 H 1.09008 * 109.46923 * 269.98247 * 1 2 3 29 29 H 1.08997 * 109.46990 * 29.97450 * 1 2 3 30 30 H 1.08993 * 109.47151 * 149.98394 * 1 2 3 31 31 H 1.07997 * 120.41183 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.46633 * 203.95527 * 11 10 8 33 33 H 1.09002 * 109.47061 * 323.95245 * 11 10 8 34 34 H 0.97010 * 119.99518 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.47277 * 214.81405 * 20 10 8 36 36 H 1.08997 * 109.47089 * 334.81327 * 20 10 8 37 37 H 1.08999 * 115.54830 * 29.32529 * 21 20 10 38 38 H 1.09004 * 117.49585 * 359.97438 * 22 21 20 39 39 H 1.08998 * 117.49762 * 145.01635 * 22 21 20 40 40 H 1.09000 * 117.49996 * 252.50585 * 23 22 21 41 41 H 1.09002 * 117.49965 * 107.48471 * 23 22 21 42 42 H 1.07999 * 120.40896 * 180.02562 * 24 4 3 43 43 H 1.08002 * 119.62334 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1766 1.1776 0.0000 4 6 3.5884 1.1666 -0.0006 5 7 4.2857 2.3188 0.0049 6 6 5.6079 2.2928 0.0955 7 8 6.2713 1.8074 -0.8049 8 6 6.2839 2.8573 1.2986 9 8 5.6238 3.3470 2.1921 10 7 7.6279 2.8240 1.3942 11 6 8.4178 2.1292 0.3746 12 6 8.6458 3.0488 -0.7972 13 1 8.2425 4.0505 -0.7840 14 6 9.3696 2.6114 -1.8862 15 7 9.8612 1.3917 -1.9020 16 14 9.6517 3.7512 -3.3391 17 1 10.9045 4.5204 -3.1288 18 1 9.7666 2.9483 -4.5829 19 1 8.5083 4.6909 -3.4603 20 6 8.2989 3.4826 2.5177 21 6 8.5555 2.4617 3.6280 22 6 7.8504 2.6827 4.9678 23 6 9.3556 2.9283 4.8457 24 6 4.2530 -0.0791 -0.0005 25 6 3.5203 -1.2185 -0.0005 26 7 2.1732 -1.1717 -0.0005 27 1 1.6710 -2.0016 -0.0003 28 1 -0.3633 -0.0003 1.0278 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5140 31 1 1.6372 2.1132 -0.0004 32 1 9.3782 1.8344 0.7975 33 1 7.8800 1.2417 0.0408 34 1 10.3707 1.0841 -2.6681 35 1 9.2481 3.8989 2.1806 36 1 7.6661 4.2835 2.8999 37 1 8.6968 1.4328 3.2970 38 1 7.2041 3.5558 5.0583 39 1 7.5277 1.7992 5.5185 40 1 10.0231 2.2063 5.3161 41 1 9.6993 3.9626 4.8558 42 1 5.3321 -0.1230 -0.0005 43 1 4.0212 -2.1753 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120868663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:31 Heat of formation + Delta-G solvation = 36.841409 kcal Electronic energy + Delta-G solvation = -26565.562159 eV Core-core repulsion = 22806.699659 eV Total energy + Delta-G solvation = -3758.862500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.99505 -39.59009 -37.82598 -36.63161 -35.18532 -34.13627 -33.31876 -32.21312 -30.57246 -28.10622 -27.81499 -26.52157 -24.29019 -23.30068 -22.77065 -22.04665 -21.48419 -19.94723 -18.87756 -18.35898 -16.89333 -16.49497 -16.31000 -15.92419 -15.38265 -15.12560 -15.04314 -14.65850 -14.29613 -14.19459 -13.97762 -13.53056 -13.28574 -13.17421 -13.08228 -12.64681 -12.35781 -12.08583 -11.86891 -11.81641 -11.42564 -11.23930 -11.21534 -11.18038 -10.75451 -10.72453 -10.21875 -10.14060 -9.81165 -9.56652 -9.54421 -9.44546 -9.21058 -8.33712 -7.99071 -7.61328 -7.24671 -5.89231 -3.88791 0.98804 1.27511 2.31981 2.71481 3.40575 3.45205 3.46141 3.54000 3.82010 4.13394 4.21251 4.26557 4.50539 4.59458 4.74005 5.02866 5.05159 5.13557 5.16012 5.22488 5.29861 5.40311 5.41291 5.47824 5.54626 5.68986 5.84760 5.89574 6.12352 6.15449 6.18893 6.26775 6.29773 6.41396 6.64175 6.68268 6.75337 6.93082 7.01242 7.47447 7.65630 8.02686 8.20858 8.33615 8.38143 8.70271 9.07417 9.18538 9.72641 11.19894 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009461 B = 0.004808 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.950959 B = 5822.124694 C = 7879.459807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.143 3.857 3 C -0.189 4.189 4 C 0.301 3.699 5 N -0.602 5.602 6 C 0.469 3.531 7 O -0.432 6.432 8 C 0.499 3.501 9 O -0.546 6.546 10 N -0.570 5.570 11 C 0.235 3.765 12 C -0.505 4.505 13 H 0.053 0.947 14 C 0.067 3.933 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.146 3.854 21 C -0.159 4.159 22 C -0.175 4.175 23 C -0.179 4.179 24 C -0.246 4.246 25 C 0.129 3.871 26 N -0.584 5.584 27 H 0.416 0.584 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.030 0.970 33 H 0.058 0.942 34 H 0.259 0.741 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.149 0.851 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.770 -9.468 7.810 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.032 3.968 3 C -0.216 4.216 4 C 0.141 3.859 5 N -0.338 5.338 6 C 0.249 3.751 7 O -0.302 6.302 8 C 0.282 3.718 9 O -0.425 6.425 10 N -0.302 5.302 11 C 0.116 3.884 12 C -0.543 4.543 13 H 0.071 0.929 14 C -0.134 4.134 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C 0.023 3.977 21 C -0.178 4.178 22 C -0.212 4.212 23 C -0.217 4.217 24 C -0.273 4.273 25 C -0.001 4.001 26 N -0.189 5.189 27 H 0.251 0.749 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.168 0.832 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.167 0.833 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.527 -8.604 7.591 20.120 hybrid contribution 0.679 -0.248 -0.950 1.194 sum -15.848 -8.852 6.641 19.329 Atomic orbital electron populations 1.20987 0.87827 1.04663 1.04111 1.20161 0.94677 0.85629 0.96341 1.20438 0.92465 0.97175 1.11476 1.18693 0.92785 0.87940 0.86487 1.68346 1.08018 1.25385 1.32049 1.21116 0.87065 0.79384 0.87536 1.91049 1.67367 1.35268 1.36488 1.20389 0.83018 0.80858 0.87508 1.90602 1.64891 1.46273 1.40730 1.48305 1.05273 1.51761 1.24851 1.19795 0.90559 0.93470 0.84556 1.21252 1.32493 0.98930 1.01669 0.92900 1.24782 0.95717 0.95041 0.97871 1.69922 1.36440 1.16460 1.30703 0.86587 0.78277 0.80786 0.82305 1.20827 1.21264 1.20011 1.20957 0.97830 0.93502 0.85423 1.22763 1.04210 1.01169 0.89704 1.22960 0.94580 1.03096 1.00600 1.22903 0.94220 1.02131 1.02437 1.21905 1.02193 0.92119 1.11077 1.21586 0.82223 1.00648 0.95631 1.40606 1.06170 1.08572 1.63588 0.74890 0.89464 0.88815 0.90737 0.83158 0.95230 0.92409 0.93113 0.89842 0.90604 0.87786 0.88720 0.89545 0.89143 0.88890 0.83321 0.81526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.42 10.06 36.01 0.36 -0.06 16 2 C 0.14 1.12 6.79 -82.28 -0.56 0.57 16 3 C -0.19 -2.39 9.62 -39.46 -0.38 -2.77 16 4 C 0.30 5.32 6.60 -84.38 -0.56 4.77 16 5 N -0.60 -13.71 10.26 -10.81 -0.11 -13.82 16 6 C 0.47 11.84 6.02 -12.73 -0.08 11.76 16 7 O -0.43 -11.91 11.66 4.99 0.06 -11.85 16 8 C 0.50 12.62 7.66 -11.75 -0.09 12.53 16 9 O -0.55 -14.05 16.46 5.45 0.09 -13.96 16 10 N -0.57 -13.85 2.47 -175.71 -0.43 -14.28 16 11 C 0.24 6.37 4.78 -5.20 -0.02 6.34 16 12 C -0.50 -14.96 7.79 -34.44 -0.27 -15.23 16 13 H 0.05 1.62 7.81 -52.49 -0.41 1.21 16 14 C 0.07 1.99 5.46 -17.82 -0.10 1.90 16 15 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 16 Si 0.89 23.14 29.54 -169.99 -5.02 18.12 16 17 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 19 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 20 C 0.15 3.00 5.68 -4.05 -0.02 2.98 16 21 C -0.16 -2.80 6.01 -90.62 -0.54 -3.35 16 22 C -0.18 -2.69 10.18 -26.73 -0.27 -2.96 16 23 C -0.18 -2.54 10.25 -26.74 -0.27 -2.81 16 24 C -0.25 -3.78 9.06 -39.45 -0.36 -4.13 16 25 C 0.13 1.18 11.15 -17.24 -0.19 0.99 16 26 N -0.58 -3.66 5.18 -9.53 -0.05 -3.71 16 27 H 0.42 0.80 8.74 -40.82 -0.36 0.44 16 28 H 0.09 0.23 8.14 -51.92 -0.42 -0.19 16 29 H 0.09 0.32 8.07 -51.93 -0.42 -0.09 16 30 H 0.07 0.11 8.13 -51.93 -0.42 -0.31 16 31 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.03 0.81 8.03 -51.93 -0.42 0.40 16 33 H 0.06 1.68 5.83 -51.93 -0.30 1.38 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 35 H 0.08 1.67 8.11 -51.93 -0.42 1.25 16 36 H 0.08 1.55 7.09 -51.93 -0.37 1.18 16 37 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 38 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.15 2.72 6.41 -52.49 -0.34 2.39 16 43 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 368.66 15.07 5.56 5.56 Total: -1.00 -40.32 368.66 -8.49 -48.81 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.96 Total: 1.04 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -3.35 Total: 10.51 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.14 Total: -58.23 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: 0.15 Total: -25.81 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -40.32 -8.49 -48.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120868663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.653 kcal (2) G-P(sol) polarization free energy of solvation -40.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds