Wall clock time and date at job start Tue Mar 31 2020 12:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35462 * 119.62285 * 2 1 4 4 C 1.41183 * 119.17592 * 180.02562 * 3 2 1 5 5 N 1.34679 * 120.73488 * 180.26849 * 4 3 2 6 6 C 1.32549 * 119.99828 * 175.44079 * 5 4 3 7 7 O 1.21920 * 120.00148 * 65.43133 * 6 5 4 8 8 C 1.49102 * 120.00400 * 245.42796 * 6 5 4 9 9 O 1.21402 * 120.00029 * 359.61762 * 8 6 5 10 10 N 1.34777 * 120.00351 * 179.62084 * 8 6 5 11 11 C 1.46504 * 119.99625 * 354.59950 * 10 8 6 12 12 C 1.50690 * 109.47221 * 83.95617 * 11 10 8 13 13 H 1.07996 * 120.00223 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99574 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00116 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47130 * 90.00034 * 16 14 12 18 18 H 1.48493 * 109.46954 * 209.99813 * 16 14 12 19 19 H 1.48497 * 109.47124 * 329.99967 * 16 14 12 20 20 C 1.46495 * 120.00117 * 174.60046 * 10 8 6 21 21 C 1.52995 * 109.47496 * 94.81510 * 20 10 8 22 22 C 1.53006 * 117.49955 * 243.62400 * 21 20 10 23 23 C 1.52995 * 59.99804 * 252.50518 * 22 21 20 24 24 C 1.41182 * 118.52692 * 359.97438 * 4 3 2 25 25 C 1.35465 * 119.17749 * 0.02562 * 24 4 3 26 26 N 1.34786 * 119.61988 * 180.02562 * 2 1 3 27 27 H 0.97004 * 119.19931 * 359.95714 * 26 2 1 28 28 H 1.09008 * 109.46923 * 269.98247 * 1 2 3 29 29 H 1.08997 * 109.46990 * 29.97450 * 1 2 3 30 30 H 1.08993 * 109.47151 * 149.98394 * 1 2 3 31 31 H 1.07997 * 120.41183 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.46633 * 203.95527 * 11 10 8 33 33 H 1.09002 * 109.47061 * 323.95245 * 11 10 8 34 34 H 0.97010 * 119.99518 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.47277 * 214.81405 * 20 10 8 36 36 H 1.08997 * 109.47089 * 334.81327 * 20 10 8 37 37 H 1.08999 * 115.54830 * 29.32529 * 21 20 10 38 38 H 1.09004 * 117.49585 * 359.97438 * 22 21 20 39 39 H 1.08998 * 117.49762 * 145.01635 * 22 21 20 40 40 H 1.09000 * 117.49996 * 252.50585 * 23 22 21 41 41 H 1.09002 * 117.49965 * 107.48471 * 23 22 21 42 42 H 1.07999 * 120.40896 * 180.02562 * 24 4 3 43 43 H 1.08002 * 119.62334 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1766 1.1776 0.0000 4 6 3.5884 1.1666 -0.0006 5 7 4.2857 2.3188 0.0049 6 6 5.6079 2.2928 0.0955 7 8 6.2713 1.8074 -0.8049 8 6 6.2839 2.8573 1.2986 9 8 5.6238 3.3470 2.1921 10 7 7.6279 2.8240 1.3942 11 6 8.4178 2.1292 0.3746 12 6 8.6458 3.0488 -0.7972 13 1 8.2425 4.0505 -0.7840 14 6 9.3696 2.6114 -1.8862 15 7 9.8612 1.3917 -1.9020 16 14 9.6517 3.7512 -3.3391 17 1 10.9045 4.5204 -3.1288 18 1 9.7666 2.9483 -4.5829 19 1 8.5083 4.6909 -3.4603 20 6 8.2989 3.4826 2.5177 21 6 8.5555 2.4617 3.6280 22 6 7.8504 2.6827 4.9678 23 6 9.3556 2.9283 4.8457 24 6 4.2530 -0.0791 -0.0005 25 6 3.5203 -1.2185 -0.0005 26 7 2.1732 -1.1717 -0.0005 27 1 1.6710 -2.0016 -0.0003 28 1 -0.3633 -0.0003 1.0278 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5140 31 1 1.6372 2.1132 -0.0004 32 1 9.3782 1.8344 0.7975 33 1 7.8800 1.2417 0.0408 34 1 10.3707 1.0841 -2.6681 35 1 9.2481 3.8989 2.1806 36 1 7.6661 4.2835 2.8999 37 1 8.6968 1.4328 3.2970 38 1 7.2041 3.5558 5.0583 39 1 7.5277 1.7992 5.5185 40 1 10.0231 2.2063 5.3161 41 1 9.6993 3.9626 4.8558 42 1 5.3321 -0.1230 -0.0005 43 1 4.0212 -2.1753 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120868663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:30 Heat of formation + Delta-G solvation = 5.332280 kcal Electronic energy + Delta-G solvation = -26566.928497 eV Core-core repulsion = 22806.699659 eV Total energy + Delta-G solvation = -3760.228838 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.07800 -41.28730 -39.43091 -38.19326 -36.79381 -35.77308 -34.41009 -34.10685 -31.85894 -29.76634 -28.83840 -28.38883 -25.81512 -24.81589 -24.25086 -23.24195 -22.88830 -21.41009 -19.98053 -19.73773 -18.69309 -18.26675 -18.02077 -17.40631 -17.04242 -16.44601 -16.32105 -16.06476 -15.92037 -15.77249 -15.25645 -15.08520 -14.68317 -14.36076 -14.10046 -13.78492 -13.71128 -13.53831 -13.41015 -13.15513 -13.02303 -12.83103 -12.73113 -12.62336 -12.60323 -12.36201 -12.22988 -11.80960 -11.76741 -11.35967 -10.90319 -10.83507 -10.50178 -10.39390 -9.80427 -9.58968 -8.56007 -8.16229 -6.23584 -0.12139 0.25780 0.59464 1.31916 1.35334 1.45654 1.92124 1.97431 2.20768 2.40350 2.68418 2.89915 3.15820 3.32074 3.57214 3.77040 3.79116 3.96625 4.03456 4.07646 4.09691 4.31148 4.35324 4.54771 4.58703 4.65107 4.72450 4.76998 4.80389 4.85252 4.97993 5.08912 5.15704 5.21104 5.25176 5.25850 5.28964 5.57047 5.59801 5.77979 5.78738 6.11671 6.25118 6.30951 6.60500 6.77212 7.01173 7.40275 7.44878 8.92394 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009461 B = 0.004808 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.950959 B = 5822.124694 C = 7879.459807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.194 3.806 3 C -0.232 4.232 4 C 0.296 3.704 5 N -0.685 5.685 6 C 0.478 3.522 7 O -0.488 6.488 8 C 0.488 3.512 9 O -0.560 6.560 10 N -0.573 5.573 11 C 0.259 3.741 12 C -0.518 4.518 13 H 0.032 0.968 14 C 0.021 3.979 15 N -0.920 5.920 16 Si 0.953 3.047 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.286 1.286 20 C 0.144 3.856 21 C -0.189 4.189 22 C -0.169 4.169 23 C -0.147 4.147 24 C -0.308 4.308 25 C 0.190 3.810 26 N -0.546 5.546 27 H 0.449 0.551 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.151 0.849 32 H 0.020 0.980 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.699 -12.377 8.396 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.079 3.921 3 C -0.258 4.258 4 C 0.146 3.854 5 N -0.429 5.429 6 C 0.259 3.741 7 O -0.362 6.362 8 C 0.271 3.729 9 O -0.440 6.440 10 N -0.304 5.304 11 C 0.139 3.861 12 C -0.557 4.557 13 H 0.051 0.949 14 C -0.178 4.178 15 N -0.561 5.561 16 Si 0.779 3.221 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.212 1.212 20 C 0.021 3.979 21 C -0.209 4.209 22 C -0.206 4.206 23 C -0.184 4.184 24 C -0.336 4.336 25 C 0.056 3.944 26 N -0.150 5.150 27 H 0.292 0.708 28 H 0.129 0.871 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.169 0.831 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.132 0.868 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -19.550 -11.613 8.210 24.176 hybrid contribution 1.137 0.300 -1.091 1.604 sum -18.413 -11.313 7.118 22.753 Atomic orbital electron populations 1.21250 0.83254 1.06877 1.06147 1.20817 0.97000 0.84233 0.90047 1.20557 0.90339 0.99650 1.15252 1.19374 0.94720 0.87534 0.83767 1.68079 1.06222 1.26962 1.41666 1.21145 0.88286 0.78199 0.86440 1.90963 1.68545 1.38728 1.37935 1.20898 0.83194 0.80655 0.88106 1.90532 1.65125 1.47068 1.41320 1.48327 1.05204 1.51567 1.25300 1.19293 0.89682 0.92628 0.84542 1.21339 1.32750 0.98403 1.03164 0.94926 1.25529 0.95374 0.96614 1.00247 1.70012 1.36784 1.17660 1.31600 0.85643 0.78332 0.78884 0.79257 1.18671 1.20064 1.21196 1.21114 0.97157 0.94238 0.85343 1.22553 1.08549 0.99647 0.90108 1.23014 0.95718 1.03492 0.98415 1.23042 0.93686 1.03366 0.98328 1.21673 1.01107 0.93717 1.17099 1.22126 0.82913 1.00461 0.88884 1.40984 1.05611 1.10030 1.58354 0.70810 0.87132 0.88303 0.86932 0.83142 0.96159 0.94732 0.92671 0.90010 0.90959 0.89217 0.89330 0.87976 0.86757 0.87574 0.87418 0.76270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.10 10.06 71.24 0.72 0.62 16 2 C 0.19 2.18 6.79 41.47 0.28 2.46 16 3 C -0.23 -5.76 9.62 22.35 0.21 -5.54 16 4 C 0.30 11.16 6.60 40.15 0.27 11.43 16 5 N -0.69 -34.54 10.26 -307.47 -3.15 -37.70 16 6 C 0.48 26.88 6.02 87.51 0.53 27.40 16 7 O -0.49 -29.95 11.66 -5.05 -0.06 -30.00 16 8 C 0.49 27.13 7.66 87.16 0.67 27.80 16 9 O -0.56 -31.24 16.46 -3.41 -0.06 -31.30 16 10 N -0.57 -30.40 2.47 -828.16 -2.05 -32.44 16 11 C 0.26 15.24 4.78 85.63 0.41 15.65 16 12 C -0.52 -32.83 7.79 25.60 0.20 -32.63 16 13 H 0.03 2.14 7.81 -2.91 -0.02 2.12 16 14 C 0.02 1.32 5.46 84.66 0.46 1.78 16 15 N -0.92 -57.94 13.29 21.45 0.28 -57.66 16 16 Si 0.95 49.18 29.54 68.60 2.03 51.21 16 17 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 19 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 20 C 0.14 6.31 5.68 86.38 0.49 6.81 16 21 C -0.19 -6.94 6.01 -10.79 -0.06 -7.00 16 22 C -0.17 -5.17 10.18 30.59 0.31 -4.86 16 23 C -0.15 -3.98 10.25 30.59 0.31 -3.66 16 24 C -0.31 -9.91 9.06 22.35 0.20 -9.71 16 25 C 0.19 2.78 11.15 83.60 0.93 3.71 16 26 N -0.55 -3.62 5.18 -184.06 -0.95 -4.57 16 27 H 0.45 -2.00 8.74 -92.71 -0.81 -2.81 16 28 H 0.11 -0.16 8.14 -2.38 -0.02 -0.18 16 29 H 0.10 0.18 8.07 -2.39 -0.02 0.16 16 30 H 0.11 -0.59 8.13 -2.39 -0.02 -0.61 16 31 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 32 H 0.02 1.21 8.03 -2.39 -0.02 1.19 16 33 H 0.03 2.23 5.83 -2.39 -0.01 2.21 16 34 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 35 H 0.08 3.51 8.11 -2.39 -0.02 3.49 16 36 H 0.07 3.17 7.09 -2.39 -0.02 3.15 16 37 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 38 H 0.09 2.82 8.03 -2.38 -0.02 2.80 16 39 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.11 4.44 6.41 -2.91 -0.02 4.43 16 43 H 0.22 1.09 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -102.78 368.66 2.20 -100.58 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.23 Total: 7.63 kcal Atomic # 6 Polarization: 28.32 SS G_CDS: 5.93 Total: 34.25 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -5.87 Total: -132.37 kcal Atomic # 8 Polarization: -61.18 SS G_CDS: -0.12 Total: -61.30 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 2.03 Total: 51.21 kcal Total: -102.78 2.20 -100.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120868663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.912 kcal (2) G-P(sol) polarization free energy of solvation -102.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds