Wall clock time and date at job start Tue Mar 31 2020 11:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31480 * 119.81971 * 2 1 4 4 C 1.32740 * 121.73440 * 179.97438 * 3 2 1 5 5 N 1.38374 * 119.43403 * 179.97438 * 4 3 2 6 6 C 1.46864 * 110.99746 * 359.97438 * 5 4 3 7 7 C 1.53138 * 109.44890 * 186.34963 * 6 5 4 8 8 C 1.52559 * 109.31908 * 301.71192 * 7 6 5 9 9 C 1.53617 * 110.32831 * 178.59258 * 8 7 6 10 10 O 1.45843 * 103.93629 * 118.90068 * 9 8 7 11 11 C 1.33852 * 109.44421 * 359.92944 * 10 9 8 12 12 O 1.21512 * 123.09395 * 180.02562 * 11 10 9 13 13 N 1.34175 * 113.81682 * 359.97438 * 11 10 9 14 14 C 1.52556 * 110.46581 * 56.33190 * 8 7 6 15 15 C 1.46848 * 111.00206 * 124.34660 * 5 4 3 16 16 C 1.39706 * 121.13673 * 0.24668 * 4 3 2 17 17 C 1.36558 * 119.49431 * 359.49856 * 16 4 3 18 18 C 1.40758 * 119.81281 * 179.97438 * 2 1 3 19 19 C 1.41202 * 120.57281 * 0.04092 * 18 2 1 20 20 H 1.08005 * 119.99978 * 24.87438 * 19 18 2 21 21 C 1.39865 * 120.00109 * 204.87903 * 19 18 2 22 22 N 1.30895 * 120.00364 * 14.68627 * 21 19 18 23 23 Si 1.86807 * 119.99843 * 194.68766 * 21 19 18 24 24 H 1.48494 * 109.47080 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46677 * 119.99895 * 23 21 19 26 26 H 1.48497 * 109.47264 * 239.99889 * 23 21 19 27 27 H 1.09001 * 109.46991 * 90.00191 * 1 2 3 28 28 H 1.08996 * 109.47542 * 209.99995 * 1 2 3 29 29 H 1.09007 * 109.47201 * 330.00042 * 1 2 3 30 30 H 1.09003 * 109.47076 * 66.35221 * 6 5 4 31 31 H 1.08999 * 109.47714 * 306.34483 * 6 5 4 32 32 H 1.09008 * 109.49259 * 181.76359 * 7 6 5 33 33 H 1.08993 * 109.50066 * 61.66953 * 7 6 5 34 34 H 1.08992 * 110.55963 * 0.24702 * 9 8 7 35 35 H 1.09004 * 110.55620 * 237.54871 * 9 8 7 36 36 H 0.97000 * 125.66767 * 179.97438 * 13 11 10 37 37 H 1.08997 * 109.49317 * 63.62810 * 14 8 7 38 38 H 1.08995 * 109.49979 * 183.72293 * 14 8 7 39 39 H 1.09001 * 109.47037 * 293.65369 * 15 5 4 40 40 H 1.08995 * 109.47150 * 53.66383 * 15 5 4 41 41 H 1.08004 * 120.25379 * 179.71768 * 16 4 3 42 42 H 1.07999 * 120.79793 * 180.24200 * 17 16 4 43 43 H 0.96999 * 120.00767 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1407 0.0000 4 6 3.4874 1.1851 0.0005 5 7 4.1268 2.4122 -0.0001 6 6 3.1540 3.5125 -0.0018 7 6 3.8915 4.8449 -0.1621 8 6 4.8954 5.0062 0.9753 9 6 5.6740 6.3210 0.8175 10 8 5.3460 7.0705 2.0249 11 6 4.5150 6.3480 2.7859 12 8 4.0831 6.7389 3.8523 13 7 4.2019 5.1529 2.2624 14 6 5.8564 3.8219 1.0104 15 6 5.0555 2.5224 1.1321 16 6 4.2494 0.0141 -0.0041 17 6 3.6198 -1.1977 0.0012 18 6 2.2068 -1.2213 0.0005 19 6 1.5090 -2.4489 0.0002 20 1 0.5047 -2.4990 -0.3938 21 6 2.1184 -3.5998 0.5103 22 7 3.1999 -3.4989 1.2408 23 14 1.3889 -5.2812 0.1489 24 1 0.1760 -5.1239 -0.6932 25 1 2.3881 -6.1094 -0.5728 26 1 1.0233 -5.9468 1.4250 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 2.6037 3.5124 0.9392 31 1 2.4577 3.3806 -0.8300 32 1 3.1730 5.6642 -0.1320 33 1 4.4179 4.8569 -1.1164 34 1 5.3404 6.8592 -0.0696 35 1 6.7455 6.1275 0.7664 36 1 3.6166 4.4939 2.6674 37 1 6.4433 3.8025 0.0922 38 1 6.5233 3.9198 1.8670 39 1 4.4918 2.5293 2.0651 40 1 5.7380 1.6726 1.1262 41 1 5.3281 0.0668 -0.0082 42 1 4.1881 -2.1161 0.0017 43 1 3.6223 -4.2970 1.5949 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155702586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:34 Heat of formation + Delta-G solvation = -36.372459 kcal Electronic energy + Delta-G solvation = -26858.428764 eV Core-core repulsion = 23096.391472 eV Total energy + Delta-G solvation = -3762.037292 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.02909 -39.50714 -37.97322 -37.03520 -35.14136 -33.81456 -32.12222 -31.47842 -30.82967 -30.10757 -27.59769 -27.01200 -24.62990 -23.46147 -23.09342 -22.20190 -21.13692 -20.20529 -19.79534 -18.10171 -17.40818 -16.91369 -16.86776 -16.05679 -15.56232 -15.03223 -14.92623 -14.47099 -14.41609 -14.25504 -13.96716 -13.78918 -13.53426 -13.35073 -13.03521 -12.59990 -12.31954 -12.20578 -11.92435 -11.66210 -11.58010 -11.38764 -11.27970 -11.13773 -11.01418 -10.96024 -10.72301 -10.69214 -10.63808 -10.52574 -9.87594 -9.51493 -9.42849 -8.73518 -8.31907 -8.13777 -7.16443 -6.88147 -4.47594 2.47928 2.59970 2.65047 2.84734 2.97675 3.01962 3.05130 3.38337 3.78939 3.84776 4.18723 4.29289 4.42617 4.55196 4.90459 4.99176 5.08736 5.14456 5.31089 5.41020 5.46079 5.53580 5.61327 5.67236 5.75929 5.92600 6.06463 6.14049 6.22669 6.28083 6.37945 6.56681 6.61833 6.67963 6.69679 6.87406 6.97220 7.15829 7.21368 7.26440 7.34407 7.71589 7.91179 8.00711 8.06960 8.38429 8.61295 8.68174 9.49419 9.99463 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027474 B = 0.002967 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.885786 B = 9434.074654 C = 9613.914296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.017 3.983 3 N -0.490 5.490 4 C 0.162 3.838 5 N -0.463 5.463 6 C 0.075 3.925 7 C -0.121 4.121 8 C 0.123 3.877 9 C 0.050 3.950 10 O -0.332 6.332 11 C 0.646 3.354 12 O -0.530 6.530 13 N -0.722 5.722 14 C -0.116 4.116 15 C 0.059 3.941 16 C -0.151 4.151 17 C -0.117 4.117 18 C 0.058 3.942 19 C -0.443 4.443 20 H 0.085 0.915 21 C 0.072 3.928 22 N -0.794 5.794 23 Si 0.911 3.089 24 H -0.259 1.259 25 H -0.271 1.271 26 H -0.273 1.273 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.038 0.962 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.435 0.565 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.033 0.967 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.130 0.870 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.361 9.691 -3.355 11.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.125 4.125 3 N -0.203 5.203 4 C -0.068 4.068 5 N -0.183 5.183 6 C -0.053 4.053 7 C -0.159 4.159 8 C 0.035 3.965 9 C -0.026 4.026 10 O -0.242 6.242 11 C 0.399 3.601 12 O -0.415 6.415 13 N -0.394 5.394 14 C -0.155 4.155 15 C -0.069 4.069 16 C -0.173 4.173 17 C -0.143 4.143 18 C 0.053 3.947 19 C -0.472 4.472 20 H 0.103 0.897 21 C -0.146 4.146 22 N -0.419 5.419 23 Si 0.736 3.264 24 H -0.182 1.182 25 H -0.196 1.196 26 H -0.199 1.199 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.279 0.721 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.103 0.897 41 H 0.118 0.882 42 H 0.148 0.852 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.338 10.943 -3.111 12.566 hybrid contribution -0.342 -2.188 0.642 2.306 sum 4.996 8.754 -2.469 10.378 Atomic orbital electron populations 1.20240 0.91173 1.01087 1.00279 1.20821 0.94850 0.87642 1.09181 1.66673 1.08202 1.31129 1.14308 1.18768 0.88373 0.88379 1.11317 1.59290 1.18243 1.01003 1.39811 1.21730 0.93349 0.87930 1.02286 1.22023 0.97825 0.98897 0.97196 1.21491 0.93709 0.95912 0.85342 1.24440 1.01695 0.89829 0.86587 1.87278 1.61193 1.42686 1.33049 1.18554 0.77973 0.80157 0.83461 1.91069 1.56766 1.73978 1.19731 1.46204 1.51685 1.19071 1.22483 1.21934 0.97003 0.92951 1.03622 1.22191 0.95569 0.97263 0.91875 1.20823 0.98327 0.92576 1.05603 1.21376 0.94862 0.96523 1.01507 1.18295 0.92369 0.93112 0.90895 1.19562 1.01488 0.91881 1.34319 0.89730 1.25971 0.94353 1.01695 0.92560 1.69801 1.17113 1.31772 1.23206 0.86194 0.80184 0.80807 0.79249 1.18227 1.19636 1.19868 0.93423 0.91422 0.93457 0.94420 0.89383 0.90723 0.89282 0.87390 0.87416 0.72093 0.89011 0.90623 0.94871 0.89704 0.88248 0.85210 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 9.58 36.00 0.34 -1.06 16 2 C 0.02 0.39 6.86 -81.79 -0.56 -0.17 16 3 N -0.49 -10.98 8.53 -8.05 -0.07 -11.05 16 4 C 0.16 3.38 6.40 -155.12 -0.99 2.38 16 5 N -0.46 -7.56 4.64 -173.02 -0.80 -8.37 16 6 C 0.07 1.09 4.55 -3.77 -0.02 1.08 16 7 C -0.12 -1.23 4.91 -26.89 -0.13 -1.37 16 8 C 0.12 1.19 0.89 -131.71 -0.12 1.07 16 9 C 0.05 0.39 7.50 37.48 0.28 0.67 16 10 O -0.33 -4.07 11.10 -38.03 -0.42 -4.49 16 11 C 0.65 9.20 9.17 53.79 0.49 9.70 16 12 O -0.53 -9.68 18.04 -19.11 -0.34 -10.02 16 13 N -0.72 -8.57 5.23 -52.70 -0.28 -8.85 16 14 C -0.12 -1.14 4.91 -26.89 -0.13 -1.27 16 15 C 0.06 0.81 5.16 -3.78 -0.02 0.79 16 16 C -0.15 -3.27 9.09 -39.64 -0.36 -3.63 16 17 C -0.12 -2.82 8.73 -39.01 -0.34 -3.16 16 18 C 0.06 1.44 5.59 -106.65 -0.60 0.84 16 19 C -0.44 -10.78 8.16 -37.85 -0.31 -11.09 16 20 H 0.08 1.97 6.84 -52.48 -0.36 1.61 16 21 C 0.07 1.68 5.22 -17.34 -0.09 1.59 16 22 N -0.79 -19.06 10.83 55.54 0.60 -18.46 16 23 Si 0.91 17.42 29.58 -169.99 -5.03 12.39 16 24 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 25 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 26 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.34 6.75 -51.93 -0.35 0.99 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.60 7.43 -51.93 -0.39 0.21 16 31 H 0.09 1.44 7.67 -51.93 -0.40 1.04 16 32 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.11 0.62 7.71 -51.93 -0.40 0.22 16 35 H 0.11 0.60 7.71 -51.93 -0.40 0.20 16 36 H 0.44 5.34 7.85 -40.82 -0.32 5.02 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.03 0.50 7.46 -51.93 -0.39 0.11 16 40 H 0.08 1.21 6.62 -51.93 -0.34 0.87 16 41 H 0.10 1.92 7.12 -52.48 -0.37 1.54 16 42 H 0.13 3.21 6.17 -52.49 -0.32 2.89 16 43 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -29.15 342.46 -9.44 -38.60 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.71 Total: 8.71 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -2.55 Total: -3.63 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.55 Total: -46.72 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.77 Total: -14.51 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.15 -9.44 -38.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155702586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.226 kcal (2) G-P(sol) polarization free energy of solvation -29.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds