Wall clock time and date at job start Tue Mar 31 2020 11:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31480 * 119.81971 * 2 1 4 4 C 1.32740 * 121.73440 * 179.97438 * 3 2 1 5 5 N 1.38374 * 119.43403 * 179.97438 * 4 3 2 6 6 C 1.46864 * 110.99746 * 359.97438 * 5 4 3 7 7 C 1.53138 * 109.44890 * 186.34963 * 6 5 4 8 8 C 1.52559 * 109.31908 * 301.71192 * 7 6 5 9 9 C 1.53617 * 110.32831 * 178.59258 * 8 7 6 10 10 O 1.45843 * 103.93629 * 118.90068 * 9 8 7 11 11 C 1.33852 * 109.44421 * 359.92944 * 10 9 8 12 12 O 1.21512 * 123.09395 * 180.02562 * 11 10 9 13 13 N 1.34175 * 113.81682 * 359.97438 * 11 10 9 14 14 C 1.52556 * 110.46581 * 56.33190 * 8 7 6 15 15 C 1.46848 * 111.00206 * 124.34660 * 5 4 3 16 16 C 1.39706 * 121.13673 * 0.24668 * 4 3 2 17 17 C 1.36558 * 119.49431 * 359.49856 * 16 4 3 18 18 C 1.40758 * 119.81281 * 179.97438 * 2 1 3 19 19 C 1.41202 * 120.57281 * 0.04092 * 18 2 1 20 20 H 1.08005 * 119.99978 * 24.87438 * 19 18 2 21 21 C 1.39865 * 120.00109 * 204.87903 * 19 18 2 22 22 N 1.30895 * 120.00364 * 14.68627 * 21 19 18 23 23 Si 1.86807 * 119.99843 * 194.68766 * 21 19 18 24 24 H 1.48494 * 109.47080 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46677 * 119.99895 * 23 21 19 26 26 H 1.48497 * 109.47264 * 239.99889 * 23 21 19 27 27 H 1.09001 * 109.46991 * 90.00191 * 1 2 3 28 28 H 1.08996 * 109.47542 * 209.99995 * 1 2 3 29 29 H 1.09007 * 109.47201 * 330.00042 * 1 2 3 30 30 H 1.09003 * 109.47076 * 66.35221 * 6 5 4 31 31 H 1.08999 * 109.47714 * 306.34483 * 6 5 4 32 32 H 1.09008 * 109.49259 * 181.76359 * 7 6 5 33 33 H 1.08993 * 109.50066 * 61.66953 * 7 6 5 34 34 H 1.08992 * 110.55963 * 0.24702 * 9 8 7 35 35 H 1.09004 * 110.55620 * 237.54871 * 9 8 7 36 36 H 0.97000 * 125.66767 * 179.97438 * 13 11 10 37 37 H 1.08997 * 109.49317 * 63.62810 * 14 8 7 38 38 H 1.08995 * 109.49979 * 183.72293 * 14 8 7 39 39 H 1.09001 * 109.47037 * 293.65369 * 15 5 4 40 40 H 1.08995 * 109.47150 * 53.66383 * 15 5 4 41 41 H 1.08004 * 120.25379 * 179.71768 * 16 4 3 42 42 H 1.07999 * 120.79793 * 180.24200 * 17 16 4 43 43 H 0.96999 * 120.00767 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1407 0.0000 4 6 3.4874 1.1851 0.0005 5 7 4.1268 2.4122 -0.0001 6 6 3.1540 3.5125 -0.0018 7 6 3.8915 4.8449 -0.1621 8 6 4.8954 5.0062 0.9753 9 6 5.6740 6.3210 0.8175 10 8 5.3460 7.0705 2.0249 11 6 4.5150 6.3480 2.7859 12 8 4.0831 6.7389 3.8523 13 7 4.2019 5.1529 2.2624 14 6 5.8564 3.8219 1.0104 15 6 5.0555 2.5224 1.1321 16 6 4.2494 0.0141 -0.0041 17 6 3.6198 -1.1977 0.0012 18 6 2.2068 -1.2213 0.0005 19 6 1.5090 -2.4489 0.0002 20 1 0.5047 -2.4990 -0.3938 21 6 2.1184 -3.5998 0.5103 22 7 3.1999 -3.4989 1.2408 23 14 1.3889 -5.2812 0.1489 24 1 0.1760 -5.1239 -0.6932 25 1 2.3881 -6.1094 -0.5728 26 1 1.0233 -5.9468 1.4250 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 2.6037 3.5124 0.9392 31 1 2.4577 3.3806 -0.8300 32 1 3.1730 5.6642 -0.1320 33 1 4.4179 4.8569 -1.1164 34 1 5.3404 6.8592 -0.0696 35 1 6.7455 6.1275 0.7664 36 1 3.6166 4.4939 2.6674 37 1 6.4433 3.8025 0.0922 38 1 6.5233 3.9198 1.8670 39 1 4.4918 2.5293 2.0651 40 1 5.7380 1.6726 1.1262 41 1 5.3281 0.0668 -0.0082 42 1 4.1881 -2.1161 0.0017 43 1 3.6223 -4.2970 1.5949 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155702586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:33 Heat of formation + Delta-G solvation = -55.678987 kcal Electronic energy + Delta-G solvation = -26859.265958 eV Core-core repulsion = 23096.391472 eV Total energy + Delta-G solvation = -3762.874486 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.96973 -40.99666 -39.31180 -38.20423 -36.42592 -35.38415 -33.49270 -32.87196 -31.98886 -31.59021 -28.71378 -28.61943 -26.14224 -24.55857 -24.29817 -23.27780 -22.57843 -21.84711 -20.89367 -19.17392 -19.03535 -18.19491 -17.84388 -17.30959 -17.07676 -16.58397 -16.05118 -15.68919 -15.65916 -15.27981 -15.11629 -14.90520 -14.81333 -14.56172 -14.38327 -14.08729 -13.64201 -13.60613 -13.33283 -13.19620 -12.98981 -12.83585 -12.67588 -12.60505 -12.29820 -12.18524 -12.05432 -11.84542 -11.62580 -11.58807 -11.57328 -11.20533 -10.39946 -10.30557 -10.06050 -9.87695 -8.84969 -8.58989 -6.28329 0.76438 1.06203 1.40285 1.48992 1.54499 1.58469 1.66404 2.19535 2.56655 2.65855 2.97308 3.13126 3.51527 3.56298 3.68255 3.94032 4.10181 4.21205 4.32378 4.39523 4.42014 4.46947 4.54961 4.61911 4.68163 4.70802 4.77798 4.89745 4.93910 4.98020 4.98872 5.09116 5.13494 5.16219 5.21380 5.29898 5.50603 5.56705 5.68022 5.83388 5.94333 6.22377 6.24692 6.36004 6.63801 6.82965 6.92382 6.95441 7.73544 8.29334 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027474 B = 0.002967 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.885786 B = 9434.074654 C = 9613.914296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.003 4.003 3 N -0.501 5.501 4 C 0.171 3.829 5 N -0.459 5.459 6 C 0.077 3.923 7 C -0.109 4.109 8 C 0.122 3.878 9 C 0.051 3.949 10 O -0.340 6.340 11 C 0.648 3.352 12 O -0.581 6.581 13 N -0.717 5.717 14 C -0.106 4.106 15 C 0.057 3.943 16 C -0.158 4.158 17 C -0.135 4.135 18 C 0.026 3.974 19 C -0.472 4.472 20 H 0.086 0.914 21 C 0.034 3.966 22 N -0.827 5.827 23 Si 0.982 3.018 24 H -0.255 1.255 25 H -0.266 1.266 26 H -0.269 1.269 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.019 0.981 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.431 0.569 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.016 0.984 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.657 10.949 -4.636 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.144 4.144 3 N -0.214 5.214 4 C -0.061 4.061 5 N -0.179 5.179 6 C -0.051 4.051 7 C -0.147 4.147 8 C 0.036 3.964 9 C -0.023 4.023 10 O -0.250 6.250 11 C 0.401 3.599 12 O -0.470 6.470 13 N -0.388 5.388 14 C -0.144 4.144 15 C -0.070 4.070 16 C -0.180 4.180 17 C -0.161 4.161 18 C 0.021 3.979 19 C -0.502 4.502 20 H 0.104 0.896 21 C -0.181 4.181 22 N -0.453 5.453 23 Si 0.803 3.197 24 H -0.179 1.179 25 H -0.191 1.191 26 H -0.194 1.194 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.274 0.726 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.035 0.965 40 H 0.098 0.902 41 H 0.140 0.860 42 H 0.134 0.866 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.650 12.215 -4.430 14.596 hybrid contribution -0.654 -2.456 0.990 2.727 sum 5.996 9.759 -3.440 11.959 Atomic orbital electron populations 1.20206 0.89297 1.01379 1.01153 1.21325 0.96478 0.87640 1.08948 1.66821 1.08959 1.30659 1.14997 1.19284 0.88143 0.90200 1.08455 1.59264 1.18181 0.99578 1.40853 1.21731 0.93295 0.89568 1.00504 1.21974 0.98043 0.96134 0.98569 1.21651 0.93568 0.97319 0.83886 1.24850 1.03362 0.88183 0.85861 1.87264 1.60416 1.43054 1.34255 1.18605 0.77810 0.80437 0.83044 1.91024 1.58762 1.75137 1.22117 1.46268 1.51216 1.18187 1.23133 1.21929 0.96565 0.90157 1.05731 1.22264 0.94958 0.99798 0.90000 1.21050 0.99568 0.92176 1.05247 1.21400 0.94998 0.97015 1.02706 1.18623 0.92986 0.94077 0.92211 1.19758 1.01949 0.92695 1.35783 0.89604 1.26757 0.94605 1.04915 0.91830 1.69852 1.18370 1.32997 1.24061 0.85144 0.79405 0.76102 0.79062 1.17881 1.19092 1.19401 0.92154 0.91701 0.92445 0.96263 0.91403 0.89561 0.86767 0.84376 0.84167 0.72610 0.86306 0.89098 0.96530 0.90170 0.86037 0.86553 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.55 9.58 71.23 0.68 -1.86 16 2 C 0.00 -0.15 6.86 43.23 0.30 0.14 16 3 N -0.50 -22.71 8.53 -179.37 -1.53 -24.24 16 4 C 0.17 7.11 6.40 133.31 0.85 7.96 16 5 N -0.46 -14.31 4.64 -701.31 -3.26 -17.56 16 6 C 0.08 2.13 4.55 86.36 0.39 2.52 16 7 C -0.11 -1.84 4.91 30.49 0.15 -1.69 16 8 C 0.12 1.92 0.89 3.43 0.00 1.92 16 9 C 0.05 0.55 7.50 72.19 0.54 1.09 16 10 O -0.34 -7.32 11.10 -48.07 -0.53 -7.85 16 11 C 0.65 17.56 9.17 129.89 1.19 18.75 16 12 O -0.58 -21.30 18.04 19.64 0.35 -20.95 16 13 N -0.72 -15.83 5.23 -552.13 -2.89 -18.72 16 14 C -0.11 -1.64 4.91 30.49 0.15 -1.49 16 15 C 0.06 1.46 5.16 86.36 0.45 1.91 16 16 C -0.16 -6.93 9.09 22.23 0.20 -6.73 16 17 C -0.13 -6.73 8.73 22.64 0.20 -6.53 16 18 C 0.03 1.32 5.59 -21.18 -0.12 1.20 16 19 C -0.47 -23.72 8.16 23.39 0.19 -23.53 16 20 H 0.09 4.11 6.84 -2.91 -0.02 4.09 16 21 C 0.03 1.59 5.22 85.23 0.45 2.04 16 22 N -0.83 -40.85 10.83 21.81 0.24 -40.61 16 23 Si 0.98 36.07 29.58 68.60 2.03 38.10 16 24 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 25 H -0.27 -9.46 7.11 99.48 0.71 -8.76 16 26 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.06 2.62 6.75 -2.39 -0.02 2.61 16 29 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.02 0.60 7.43 -2.39 -0.02 0.58 16 31 H 0.07 2.17 7.67 -2.39 -0.02 2.15 16 32 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.14 0.74 7.71 -2.39 -0.02 0.73 16 35 H 0.14 0.69 7.71 -2.39 -0.02 0.67 16 36 H 0.43 10.38 7.85 -92.71 -0.73 9.65 16 37 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.02 0.48 7.46 -2.39 -0.02 0.47 16 40 H 0.08 2.15 6.62 -2.39 -0.02 2.14 16 41 H 0.12 4.63 7.12 -2.91 -0.02 4.61 16 42 H 0.12 6.02 6.17 -2.91 -0.02 6.01 16 43 H 0.29 12.89 8.30 -92.71 -0.77 12.12 16 Total: -1.00 -67.10 342.46 0.36 -66.74 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.33 Total: 29.38 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 5.62 Total: -4.29 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -7.44 Total: -101.13 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.18 Total: -28.80 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Total: -67.10 0.36 -66.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155702586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.064 kcal (2) G-P(sol) polarization free energy of solvation -67.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds