Wall clock time and date at job start Tue Mar 31 2020 11:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38682 * 119.27436 * 2 1 4 4 C 1.38008 * 119.62758 * 180.02562 * 3 2 1 5 5 C 1.40998 * 118.27974 * 0.02562 * 4 3 2 6 6 C 1.41012 * 120.70455 * 179.97438 * 5 4 3 7 7 H 1.08006 * 120.00234 * 214.51060 * 6 5 4 8 8 C 1.39951 * 120.00328 * 34.50608 * 6 5 4 9 9 N 1.30862 * 119.99583 * 24.22740 * 8 6 5 10 10 Si 1.86802 * 120.00181 * 204.22525 * 8 6 5 11 11 H 1.48498 * 109.47057 * 180.02562 * 10 8 6 12 12 H 1.48504 * 109.47220 * 300.00149 * 10 8 6 13 13 H 1.48501 * 109.47059 * 59.99814 * 10 8 6 14 14 C 1.41706 * 118.59114 * 0.24666 * 5 4 3 15 15 N 1.38087 * 119.91079 * 179.75171 * 14 5 4 16 16 C 1.46860 * 111.00094 * 93.26306 * 15 14 5 17 17 C 1.53136 * 109.46474 * 186.32678 * 16 15 14 18 18 C 1.52557 * 109.31823 * 301.69029 * 17 16 15 19 19 C 1.53615 * 110.31902 * 178.56800 * 18 17 16 20 20 O 1.45846 * 103.79308 * 118.85262 * 19 18 17 21 21 C 1.33848 * 109.44925 * 359.97438 * 20 19 18 22 22 O 1.21506 * 123.08957 * 179.97438 * 21 20 19 23 23 N 1.34173 * 113.82185 * 359.97438 * 21 20 19 24 24 C 1.52555 * 110.44333 * 56.34483 * 18 17 16 25 25 C 1.46857 * 111.00488 * 217.57572 * 15 14 5 26 26 N 1.31966 * 119.27739 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47187 * 89.99799 * 1 2 3 28 28 H 1.08997 * 109.47168 * 209.99835 * 1 2 3 29 29 H 1.09001 * 109.47355 * 329.99694 * 1 2 3 30 30 H 1.07999 * 120.18498 * 0.02562 * 3 2 1 31 31 H 1.07994 * 120.85811 * 179.97438 * 4 3 2 32 32 H 0.96999 * 120.00530 * 5.80404 * 9 8 6 33 33 H 1.08998 * 109.47152 * 306.32976 * 16 15 14 34 34 H 1.08995 * 109.47053 * 66.33311 * 16 15 14 35 35 H 1.09007 * 109.49790 * 181.73392 * 17 16 15 36 36 H 1.09001 * 109.49644 * 61.64535 * 17 16 15 37 37 H 1.08997 * 110.55978 * 237.42195 * 19 18 17 38 38 H 1.08995 * 110.56487 * 0.27548 * 19 18 17 39 39 H 0.96995 * 125.67238 * 179.97438 * 23 21 20 40 40 H 1.08998 * 109.49670 * 183.70771 * 24 18 17 41 41 H 1.09002 * 109.49849 * 63.60617 * 24 18 17 42 42 H 1.08996 * 109.47132 * 293.67437 * 25 15 14 43 43 H 1.09004 * 109.47057 * 53.67611 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2182 -0.0005 5 6 4.2409 -0.0193 -0.0016 6 6 5.6501 -0.0703 -0.0028 7 1 6.1615 -0.8598 -0.5334 8 6 6.3861 0.9022 0.6837 9 7 5.8421 1.5512 1.6814 10 14 8.1449 1.2738 0.1758 11 1 8.7003 2.3344 1.0543 12 1 8.9676 0.0441 0.3043 13 1 8.1653 1.7377 -1.2348 14 6 3.4738 -1.2108 -0.0075 15 7 4.1074 -2.4377 -0.0139 16 6 4.2799 -2.9481 1.3523 17 6 5.1216 -4.2269 1.3169 18 6 4.4319 -5.2606 0.4320 19 6 5.2756 -6.5418 0.3515 20 8 4.4052 -7.5674 0.9149 21 6 3.2407 -7.0147 1.2755 22 8 2.3318 -7.6486 1.7741 23 7 3.1692 -5.6965 1.0358 24 6 4.1949 -4.6937 -0.9643 25 6 3.3833 -3.3997 -0.8546 26 7 2.1524 -1.1511 -0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6364 2.1399 0.0004 31 1 4.1134 2.1487 -0.0010 32 1 4.9606 1.3011 1.9996 33 1 4.7852 -2.1971 1.9596 34 1 3.3035 -3.1677 1.7841 35 1 5.2242 -4.6231 2.3272 36 1 6.1083 -4.0018 0.9121 37 1 5.5202 -6.7745 -0.6849 38 1 6.1831 -6.4406 0.9466 39 1 2.4081 -5.1270 1.2286 40 1 3.6438 -5.4191 -1.5628 41 1 5.1533 -4.4829 -1.4389 42 1 2.4135 -3.6159 -0.4066 43 1 3.2381 -2.9765 -1.8486 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155702656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:36 Heat of formation + Delta-G solvation = -62.596528 kcal Electronic energy + Delta-G solvation = -27498.849230 eV Core-core repulsion = 23735.674777 eV Total energy + Delta-G solvation = -3763.174453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.99940 -41.02548 -39.29272 -38.16954 -36.29519 -36.03051 -33.25778 -32.59645 -32.01014 -31.40454 -29.36237 -28.24984 -25.70883 -24.43995 -24.40631 -23.31557 -22.74884 -22.26572 -20.85172 -19.75484 -19.04682 -18.10739 -17.85562 -17.13903 -16.94310 -16.29861 -16.14163 -15.84098 -15.58405 -15.31082 -15.16023 -14.97076 -14.80471 -14.78698 -14.40749 -14.34350 -13.80808 -13.54378 -13.37508 -13.11017 -13.00055 -12.84576 -12.62145 -12.53300 -12.27882 -12.07138 -11.94857 -11.85337 -11.68087 -11.62653 -11.42068 -10.97199 -10.40504 -10.39476 -10.16934 -9.62261 -9.25544 -8.88298 -6.36474 0.64921 0.85607 1.57287 1.57491 1.65649 1.67856 1.84194 2.37551 2.55781 2.70922 2.95557 3.10682 3.42715 3.53315 3.54634 3.93762 4.08771 4.19164 4.26887 4.29279 4.39100 4.40950 4.44647 4.51454 4.62427 4.68538 4.74636 4.82624 4.87799 4.89001 4.89879 4.94505 5.08616 5.12722 5.18897 5.22380 5.47830 5.64165 5.67421 5.79584 6.02901 6.11363 6.21027 6.22497 6.43623 6.89575 6.94444 6.95891 7.59879 8.08412 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.004806 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.826374 B = 5824.943732 C = 7477.454828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.018 4.018 3 C -0.139 4.139 4 C -0.196 4.196 5 C 0.046 3.954 6 C -0.502 4.502 7 H 0.088 0.912 8 C 0.005 3.995 9 N -0.820 5.820 10 Si 1.113 2.887 11 H -0.281 1.281 12 H -0.251 1.251 13 H -0.267 1.267 14 C 0.165 3.835 15 N -0.452 5.452 16 C 0.076 3.924 17 C -0.106 4.106 18 C 0.126 3.874 19 C 0.052 3.948 20 O -0.339 6.339 21 C 0.648 3.352 22 O -0.579 6.579 23 N -0.715 5.715 24 C -0.107 4.107 25 C 0.071 3.929 26 N -0.496 5.496 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.276 0.724 33 H 0.051 0.949 34 H 0.016 0.984 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.432 0.568 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.028 0.972 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.025 -8.355 -4.253 9.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.156 4.156 3 C -0.159 4.159 4 C -0.223 4.223 5 C 0.039 3.961 6 C -0.531 4.531 7 H 0.106 0.894 8 C -0.211 4.211 9 N -0.443 5.443 10 Si 0.931 3.069 11 H -0.206 1.206 12 H -0.175 1.175 13 H -0.192 1.192 14 C -0.069 4.069 15 N -0.174 5.174 16 C -0.052 4.052 17 C -0.144 4.144 18 C 0.040 3.960 19 C -0.021 4.021 20 O -0.249 6.249 21 C 0.402 3.598 22 O -0.468 6.468 23 N -0.385 5.385 24 C -0.145 4.145 25 C -0.057 4.057 26 N -0.209 5.209 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.143 0.857 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.275 0.725 40 H 0.108 0.892 41 H 0.128 0.872 42 H 0.047 0.953 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.038 -8.726 -3.847 10.356 hybrid contribution -2.466 0.756 0.318 2.599 sum 1.573 -7.970 -3.529 8.857 Atomic orbital electron populations 1.20321 0.88395 1.02081 1.01780 1.20794 0.96862 0.87792 1.10174 1.21651 0.94428 0.98638 1.01160 1.21450 0.94164 0.97245 1.09415 1.18427 0.95173 0.90636 0.91818 1.20438 0.90999 1.12254 1.29377 0.89400 1.28335 1.10016 0.90866 0.91860 1.70618 1.17682 1.36675 1.19373 0.83036 0.68899 0.78099 0.76877 1.20610 1.17537 1.19174 1.19730 0.86624 0.91131 1.09372 1.59245 1.47187 0.99985 1.10959 1.21876 0.97736 0.96620 0.88932 1.21894 1.00127 0.92043 1.00332 1.21490 0.83715 0.95821 0.95009 1.24838 0.92701 0.80758 1.03821 1.87255 1.25514 1.36880 1.75233 1.18591 0.82179 0.82034 0.77042 1.91015 1.38699 1.66923 1.50206 1.46159 1.19366 1.08051 1.64938 1.21929 1.03092 0.95285 0.94211 1.21867 0.94973 0.92157 0.96711 1.66941 1.10775 1.30727 1.12423 0.91648 0.92527 0.90716 0.85713 0.88607 0.91240 0.93058 0.96557 0.89613 0.87272 0.84131 0.84514 0.72506 0.89162 0.87235 0.95320 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.19 10.15 71.24 0.72 -1.47 16 2 C -0.02 -0.75 6.79 42.65 0.29 -0.46 16 3 C -0.14 -5.98 9.69 22.32 0.22 -5.76 16 4 C -0.20 -9.51 8.21 22.89 0.19 -9.32 16 5 C 0.05 2.24 5.10 -21.07 -0.11 2.13 16 6 C -0.50 -24.04 8.50 23.37 0.20 -23.84 16 7 H 0.09 4.11 7.84 -2.91 -0.02 4.09 16 8 C 0.00 0.22 4.95 85.25 0.42 0.65 16 9 N -0.82 -41.50 12.70 21.83 0.28 -41.23 16 10 Si 1.11 39.39 30.00 68.60 2.06 41.45 16 11 H -0.28 -10.13 7.11 99.48 0.71 -9.42 16 12 H -0.25 -7.92 7.11 99.48 0.71 -7.22 16 13 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 14 C 0.17 7.43 5.56 134.05 0.75 8.17 16 15 N -0.45 -16.56 3.93 -699.89 -2.75 -19.31 16 16 C 0.08 2.50 5.30 86.36 0.46 2.96 16 17 C -0.11 -2.35 4.90 30.49 0.15 -2.20 16 18 C 0.13 2.47 0.88 3.50 0.00 2.47 16 19 C 0.05 0.74 7.51 72.19 0.54 1.28 16 20 O -0.34 -8.03 11.10 -48.03 -0.53 -8.56 16 21 C 0.65 18.74 9.16 129.89 1.19 19.93 16 22 O -0.58 -21.85 18.04 19.66 0.35 -21.49 16 23 N -0.71 -17.48 5.20 -552.80 -2.88 -20.36 16 24 C -0.11 -2.16 4.91 30.49 0.15 -2.01 16 25 C 0.07 2.16 4.84 86.36 0.42 2.58 16 26 N -0.50 -21.93 9.17 -179.57 -1.65 -23.58 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 30 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.10 4.81 7.25 -2.91 -0.02 4.79 16 32 H 0.28 14.77 7.01 -92.71 -0.65 14.12 16 33 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 34 H 0.02 0.57 7.44 -2.39 -0.02 0.55 16 35 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.14 1.16 7.71 -2.39 -0.02 1.14 16 38 H 0.14 1.25 7.71 -2.39 -0.02 1.23 16 39 H 0.43 11.30 7.82 -92.71 -0.72 10.58 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.03 0.94 7.11 -2.39 -0.02 0.93 16 43 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 Total: -1.00 -64.94 348.98 0.90 -64.04 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.43 Total: 33.93 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 5.59 Total: -4.90 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -7.00 Total: -104.47 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.18 Total: -30.05 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.06 Total: 41.45 kcal Total: -64.94 0.90 -64.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155702656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.441 kcal (2) G-P(sol) polarization free energy of solvation -64.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds