Wall clock time and date at job start Tue Mar 31 2020 12:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35927 * 117.00251 * 2 1 4 4 C 1.39383 * 119.83132 * 0.02562 * 3 2 1 5 5 C 1.38141 * 120.54810 * 179.97438 * 4 3 2 6 6 C 1.38589 * 120.22442 * 0.02562 * 5 4 3 7 7 N 1.39409 * 120.17157 * 180.02562 * 6 5 4 8 8 N 1.40087 * 126.05817 * 132.42278 * 7 6 5 9 9 C 1.31171 * 108.22976 * 179.97438 * 8 7 6 10 10 O 1.35937 * 125.87457 * 179.97438 * 9 8 7 11 11 C 1.40430 * 108.24717 * 0.02562 * 9 8 7 12 12 C 1.50708 * 126.03722 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47002 * 89.97119 * 12 11 9 14 14 N 1.46903 * 109.47020 * 180.02562 * 13 12 11 15 15 C 1.35232 * 107.92766 * 359.74843 * 11 9 8 16 16 C 1.50694 * 126.15259 * 180.24045 * 15 11 9 17 17 C 1.41447 * 119.66223 * 0.26958 * 6 5 4 18 18 C 1.41067 * 120.26859 * 179.72465 * 17 6 5 19 19 H 1.08004 * 119.99867 * 331.55411 * 18 17 6 20 20 C 1.39941 * 119.99729 * 151.54548 * 18 17 6 21 21 N 1.30849 * 120.00488 * 348.17097 * 20 18 17 22 22 Si 1.86806 * 119.99679 * 168.16325 * 20 18 17 23 23 H 1.48502 * 109.47141 * 60.00392 * 22 20 18 24 24 H 1.48501 * 109.47014 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47172 * 300.00422 * 22 20 18 26 26 C 1.37904 * 119.83722 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47325 * 59.99657 * 1 2 3 28 28 H 1.08996 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46795 * 299.99230 * 1 2 3 30 30 H 1.07993 * 119.72430 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.88992 * 180.02562 * 5 4 3 32 32 H 0.96697 * 113.99870 * 90.03043 * 10 9 8 33 33 H 1.09000 * 109.47177 * 209.97023 * 12 11 9 34 34 H 1.08995 * 109.46680 * 329.97305 * 12 11 9 35 35 H 1.09000 * 109.47076 * 299.99966 * 13 12 11 36 36 H 1.08996 * 109.47549 * 60.00089 * 13 12 11 37 37 H 1.00902 * 110.99888 * 179.97438 * 14 13 12 38 38 H 1.00900 * 110.99334 * 303.94932 * 14 13 12 39 39 H 1.09000 * 109.47465 * 274.60278 * 16 15 11 40 40 H 1.09001 * 109.46958 * 34.60101 * 16 15 11 41 41 H 1.09005 * 109.47457 * 154.60119 * 16 15 11 42 42 H 0.96994 * 119.99864 * 179.97438 * 21 20 18 43 43 H 1.08000 * 120.11599 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2836 2.3778 0.0005 5 6 1.8954 3.6164 0.0011 6 6 3.2780 3.7116 0.0006 7 7 3.8942 4.9621 0.0016 8 7 4.9444 5.3631 0.8376 9 6 5.2535 6.6031 0.5420 10 8 6.2248 7.3454 1.1366 11 6 4.4077 7.0323 -0.4936 12 6 4.4178 8.3937 -1.1400 13 6 5.3763 8.3849 -2.3325 14 7 5.3866 9.7121 -2.9622 15 6 3.5859 6.0066 -0.8119 16 6 2.5180 6.0200 -1.8751 17 6 4.0608 2.5335 -0.0063 18 6 5.4690 2.6155 -0.0128 19 1 5.9582 3.4691 -0.4584 20 6 6.2322 1.5909 0.5583 21 7 5.6543 0.6785 1.2970 22 14 8.0761 1.5256 0.2658 23 1 8.7032 2.7695 0.7803 24 1 8.6484 0.3526 0.9741 25 1 8.3423 1.4026 -1.1900 26 6 3.4235 1.2793 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2057 2.3130 0.0005 31 1 1.2942 4.5136 0.0019 32 1 7.0907 7.2725 0.7123 33 1 3.4131 8.6404 -1.4832 34 1 4.7470 9.1377 -0.4147 35 1 6.3810 8.1382 -1.9893 36 1 5.0472 7.6408 -3.0578 37 1 6.0130 9.7323 -3.7529 38 1 4.4552 9.9919 -3.2311 39 1 1.5983 6.4336 -1.4611 40 1 2.8475 6.6341 -2.7132 41 1 2.3357 5.0022 -2.2199 42 1 6.1833 -0.0318 1.6925 43 1 4.0109 0.3730 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170342968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:39 Heat of formation + Delta-G solvation = 15.599819 kcal Electronic energy + Delta-G solvation = -26834.905221 eV Core-core repulsion = 23075.121617 eV Total energy + Delta-G solvation = -3759.783605 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89375 -38.88078 -37.11531 -36.18024 -35.43805 -33.81054 -32.02082 -31.59725 -29.97080 -29.10603 -27.74833 -26.13617 -25.61185 -25.24320 -22.26746 -21.64352 -21.36371 -19.75783 -18.92939 -17.91265 -17.15740 -16.46604 -16.29432 -15.84427 -15.54666 -14.96772 -14.92955 -14.81598 -14.45599 -14.00689 -13.83208 -13.41177 -13.10122 -13.02930 -12.67471 -12.46561 -12.20616 -12.09300 -11.88346 -11.70279 -11.63874 -11.43384 -11.27870 -11.25967 -11.18688 -10.91344 -10.70251 -10.26127 -10.20284 -9.80020 -9.41517 -9.29401 -8.74011 -8.50666 -7.90695 -7.70323 -7.04891 -6.75876 -4.58472 2.11166 2.58909 2.89099 2.99564 3.02535 3.03020 3.10053 3.30900 3.82616 4.15484 4.42269 4.56419 4.66841 5.13188 5.28601 5.32370 5.42684 5.50159 5.55508 5.61927 5.66778 5.74028 5.80434 5.83616 5.84923 5.99237 6.09835 6.13321 6.29584 6.42660 6.49427 6.67821 6.79872 6.87150 7.00498 7.08223 7.14246 7.24883 7.33921 7.37047 7.64755 7.73752 8.04797 8.11270 8.27489 8.46854 8.52739 8.64304 8.71217 9.99891 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010780 B = 0.005175 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.824445 B = 5408.807029 C = 7329.516858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.326 6.326 3 C 0.137 3.863 4 C -0.307 4.307 5 C -0.044 4.044 6 C -0.028 4.028 7 N -0.244 5.244 8 N -0.266 5.266 9 C 0.226 3.774 10 O -0.463 6.463 11 C -0.266 4.266 12 C -0.025 4.025 13 C 0.066 3.934 14 N -0.853 5.853 15 C 0.083 3.917 16 C -0.086 4.086 17 C 0.151 3.849 18 C -0.415 4.415 19 H 0.082 0.918 20 C 0.075 3.925 21 N -0.776 5.776 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.263 1.263 26 C -0.182 4.182 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.387 0.613 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.338 0.662 38 H 0.337 0.663 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.286 0.714 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 6.715 -7.395 10.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.240 6.240 3 C 0.093 3.907 4 C -0.328 4.328 5 C -0.065 4.065 6 C -0.120 4.120 7 N -0.021 5.021 8 N -0.097 5.097 9 C 0.020 3.980 10 O -0.265 6.265 11 C -0.280 4.280 12 C -0.064 4.064 13 C -0.065 4.065 14 N -0.382 5.382 15 C -0.044 4.044 16 C -0.144 4.144 17 C 0.146 3.854 18 C -0.443 4.443 19 H 0.100 0.900 20 C -0.146 4.146 21 N -0.400 5.400 22 Si 0.738 3.262 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.187 1.187 26 C -0.202 4.202 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.241 0.759 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.511 5.716 -5.358 8.585 hybrid contribution 0.459 0.118 -1.454 1.529 sum -3.053 5.834 -6.812 9.474 Atomic orbital electron populations 1.22801 0.80497 1.02140 1.00625 1.86034 1.19707 1.28672 1.89581 1.18982 0.92415 0.82668 0.96648 1.20246 0.97697 0.91612 1.23205 1.20144 0.91749 0.96365 0.98209 1.17215 0.90073 0.81057 1.23660 1.44864 1.25056 1.08816 1.23379 1.77806 1.05163 1.11291 1.15409 1.19807 0.93974 0.89431 0.94753 1.84835 1.20493 1.64537 1.56639 1.19597 1.05277 0.97937 1.05165 1.19619 0.98317 0.92620 0.95830 1.21815 1.00448 0.88437 0.95751 1.58749 1.14414 1.29293 1.35777 1.20907 0.99505 0.88258 0.95766 1.20393 0.95287 1.03588 0.95176 1.17100 0.93106 0.88236 0.86975 1.19436 0.90591 1.03986 1.30245 0.90014 1.25973 1.01855 0.93959 0.92780 1.69794 1.38806 1.10573 1.20820 0.86245 0.81249 0.78975 0.79723 1.18635 1.19974 1.18716 1.20507 0.89414 0.98745 1.11569 0.93558 0.89711 0.93499 0.87677 0.88252 0.75912 0.92292 0.90752 0.91353 0.95636 0.85046 0.85100 0.90859 0.90769 0.90461 0.90273 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 9.81 101.05 0.99 1.51 16 2 O -0.33 -6.71 10.49 -19.51 -0.20 -6.91 16 3 C 0.14 3.13 6.67 -39.28 -0.26 2.86 16 4 C -0.31 -6.36 9.03 -39.19 -0.35 -6.71 16 5 C -0.04 -0.93 8.49 -39.49 -0.34 -1.27 16 6 C -0.03 -0.68 5.96 -83.06 -0.50 -1.17 16 7 N -0.24 -5.53 3.27 -6.47 -0.02 -5.55 16 8 N -0.27 -6.37 10.99 30.59 0.34 -6.03 16 9 C 0.23 4.60 8.41 -17.01 -0.14 4.46 16 10 O -0.46 -8.21 13.65 -19.54 -0.27 -8.48 16 11 C -0.27 -4.75 5.37 -104.86 -0.56 -5.32 16 12 C -0.02 -0.35 5.63 -27.88 -0.16 -0.50 16 13 C 0.07 0.81 6.77 -3.82 -0.03 0.79 16 14 N -0.85 -8.66 9.62 -10.37 -0.10 -8.76 16 15 C 0.08 1.56 6.77 -81.85 -0.55 1.00 16 16 C -0.09 -1.24 8.69 36.00 0.31 -0.93 16 17 C 0.15 3.90 5.56 -106.68 -0.59 3.30 16 18 C -0.41 -10.81 7.93 -37.87 -0.30 -11.11 16 19 H 0.08 2.16 7.10 -52.48 -0.37 1.78 16 20 C 0.07 1.85 5.24 -17.33 -0.09 1.75 16 21 N -0.78 -19.69 10.85 55.55 0.60 -19.09 16 22 Si 0.91 18.74 29.58 -169.99 -5.03 13.72 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 26 C -0.18 -4.60 8.58 -38.78 -0.33 -4.93 16 27 H 0.05 0.62 7.65 -51.93 -0.40 0.23 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.66 7.65 -51.92 -0.40 0.26 16 30 H 0.11 1.86 6.26 -52.49 -0.33 1.53 16 31 H 0.10 1.86 7.47 -52.49 -0.39 1.47 16 32 H 0.39 5.00 9.06 45.56 0.41 5.41 16 33 H 0.06 0.74 7.89 -51.93 -0.41 0.33 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.34 2.85 9.08 -39.29 -0.36 2.49 16 38 H 0.34 2.91 8.99 -39.29 -0.35 2.56 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.88 8.01 -51.93 -0.42 0.47 16 41 H 0.08 1.18 7.19 -51.93 -0.37 0.81 16 42 H 0.29 6.61 8.30 -40.82 -0.34 6.28 16 43 H 0.14 3.58 6.20 -52.49 -0.33 3.26 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -30.77 360.22 -7.11 -37.88 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -4.96 Total: 14.06 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -2.90 Total: -16.26 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.82 Total: -39.44 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.47 Total: -15.39 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.77 -7.11 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170342968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.483 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds