Wall clock time and date at job start Tue Mar 31 2020 12:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35927 * 117.00251 * 2 1 4 4 C 1.39383 * 119.83132 * 0.02562 * 3 2 1 5 5 C 1.38141 * 120.54810 * 179.97438 * 4 3 2 6 6 C 1.38589 * 120.22442 * 0.02562 * 5 4 3 7 7 N 1.39409 * 120.17157 * 180.02562 * 6 5 4 8 8 N 1.40087 * 126.05817 * 132.42278 * 7 6 5 9 9 C 1.31171 * 108.22976 * 179.97438 * 8 7 6 10 10 O 1.35937 * 125.87457 * 179.97438 * 9 8 7 11 11 C 1.40430 * 108.24717 * 0.02562 * 9 8 7 12 12 C 1.50708 * 126.03722 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47002 * 89.97119 * 12 11 9 14 14 N 1.46903 * 109.47020 * 180.02562 * 13 12 11 15 15 C 1.35232 * 107.92766 * 359.74843 * 11 9 8 16 16 C 1.50694 * 126.15259 * 180.24045 * 15 11 9 17 17 C 1.41447 * 119.66223 * 0.26958 * 6 5 4 18 18 C 1.41067 * 120.26859 * 179.72465 * 17 6 5 19 19 H 1.08004 * 119.99867 * 331.55411 * 18 17 6 20 20 C 1.39941 * 119.99729 * 151.54548 * 18 17 6 21 21 N 1.30849 * 120.00488 * 348.17097 * 20 18 17 22 22 Si 1.86806 * 119.99679 * 168.16325 * 20 18 17 23 23 H 1.48502 * 109.47141 * 60.00392 * 22 20 18 24 24 H 1.48501 * 109.47014 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47172 * 300.00422 * 22 20 18 26 26 C 1.37904 * 119.83722 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47325 * 59.99657 * 1 2 3 28 28 H 1.08996 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46795 * 299.99230 * 1 2 3 30 30 H 1.07993 * 119.72430 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.88992 * 180.02562 * 5 4 3 32 32 H 0.96697 * 113.99870 * 90.03043 * 10 9 8 33 33 H 1.09000 * 109.47177 * 209.97023 * 12 11 9 34 34 H 1.08995 * 109.46680 * 329.97305 * 12 11 9 35 35 H 1.09000 * 109.47076 * 299.99966 * 13 12 11 36 36 H 1.08996 * 109.47549 * 60.00089 * 13 12 11 37 37 H 1.00902 * 110.99888 * 179.97438 * 14 13 12 38 38 H 1.00900 * 110.99334 * 303.94932 * 14 13 12 39 39 H 1.09000 * 109.47465 * 274.60278 * 16 15 11 40 40 H 1.09001 * 109.46958 * 34.60101 * 16 15 11 41 41 H 1.09005 * 109.47457 * 154.60119 * 16 15 11 42 42 H 0.96994 * 119.99864 * 179.97438 * 21 20 18 43 43 H 1.08000 * 120.11599 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2836 2.3778 0.0005 5 6 1.8954 3.6164 0.0011 6 6 3.2780 3.7116 0.0006 7 7 3.8942 4.9621 0.0016 8 7 4.9444 5.3631 0.8376 9 6 5.2535 6.6031 0.5420 10 8 6.2248 7.3454 1.1366 11 6 4.4077 7.0323 -0.4936 12 6 4.4178 8.3937 -1.1400 13 6 5.3763 8.3849 -2.3325 14 7 5.3866 9.7121 -2.9622 15 6 3.5859 6.0066 -0.8119 16 6 2.5180 6.0200 -1.8751 17 6 4.0608 2.5335 -0.0063 18 6 5.4690 2.6155 -0.0128 19 1 5.9582 3.4691 -0.4584 20 6 6.2322 1.5909 0.5583 21 7 5.6543 0.6785 1.2970 22 14 8.0761 1.5256 0.2658 23 1 8.7032 2.7695 0.7803 24 1 8.6484 0.3526 0.9741 25 1 8.3423 1.4026 -1.1900 26 6 3.4235 1.2793 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2057 2.3130 0.0005 31 1 1.2942 4.5136 0.0019 32 1 7.0907 7.2725 0.7123 33 1 3.4131 8.6404 -1.4832 34 1 4.7470 9.1377 -0.4147 35 1 6.3810 8.1382 -1.9893 36 1 5.0472 7.6408 -3.0578 37 1 6.0130 9.7323 -3.7529 38 1 4.4552 9.9919 -3.2311 39 1 1.5983 6.4336 -1.4611 40 1 2.8475 6.6341 -2.7132 41 1 2.3357 5.0022 -2.2199 42 1 6.1833 -0.0318 1.6925 43 1 4.0109 0.3730 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170342968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:38 Heat of formation + Delta-G solvation = -8.800292 kcal Electronic energy + Delta-G solvation = -26835.963289 eV Core-core repulsion = 23075.121617 eV Total energy + Delta-G solvation = -3760.841673 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.41775 -40.51418 -38.65528 -37.73074 -36.48859 -35.59019 -33.30121 -33.14268 -31.72374 -30.42836 -29.17217 -27.53759 -27.05590 -26.85105 -23.62042 -23.17225 -22.89896 -21.33306 -20.37686 -19.63307 -18.59326 -18.08579 -17.99039 -17.21165 -16.73613 -16.54149 -16.37835 -16.13905 -15.69675 -15.30665 -15.12802 -15.00972 -14.64982 -14.29339 -14.17857 -13.79721 -13.62897 -13.56897 -13.37240 -13.12379 -12.94016 -12.86003 -12.83719 -12.68111 -12.57501 -12.37638 -12.03947 -11.96155 -11.76275 -11.47243 -11.13802 -10.85018 -10.11209 -9.57407 -9.51336 -9.36337 -8.82435 -8.46900 -6.47192 0.46682 0.83852 1.28436 1.29079 1.40120 1.43846 1.55966 1.78593 2.12234 2.60363 2.71850 3.22163 3.48077 3.73869 3.88083 4.09713 4.15928 4.33318 4.41251 4.45596 4.47839 4.49864 4.54011 4.60334 4.74351 4.76137 4.81101 4.82473 4.97548 5.02002 5.13255 5.20927 5.28386 5.33568 5.40342 5.44313 5.62778 5.71389 5.86398 5.96372 6.23765 6.27844 6.58008 6.69059 6.72975 6.76500 6.79259 6.95781 6.98557 8.21704 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010780 B = 0.005175 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.824445 B = 5408.807029 C = 7329.516858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.346 6.346 3 C 0.138 3.862 4 C -0.293 4.293 5 C -0.042 4.042 6 C -0.038 4.038 7 N -0.265 5.265 8 N -0.331 5.331 9 C 0.223 3.777 10 O -0.468 6.468 11 C -0.261 4.261 12 C -0.016 4.016 13 C 0.074 3.926 14 N -0.854 5.854 15 C 0.081 3.919 16 C -0.084 4.084 17 C 0.124 3.876 18 C -0.445 4.445 19 H 0.065 0.935 20 C 0.036 3.964 21 N -0.812 5.812 22 Si 0.976 3.024 23 H -0.268 1.268 24 H -0.261 1.261 25 H -0.256 1.256 26 C -0.214 4.214 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.056 0.944 30 H 0.145 0.855 31 H 0.130 0.870 32 H 0.407 0.593 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.026 0.974 37 H 0.349 0.651 38 H 0.349 0.651 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.290 0.710 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.707 8.439 -8.863 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.261 6.261 3 C 0.093 3.907 4 C -0.313 4.313 5 C -0.063 4.063 6 C -0.130 4.130 7 N -0.043 5.043 8 N -0.162 5.162 9 C 0.018 3.982 10 O -0.273 6.273 11 C -0.274 4.274 12 C -0.055 4.055 13 C -0.057 4.057 14 N -0.385 5.385 15 C -0.045 4.045 16 C -0.142 4.142 17 C 0.119 3.881 18 C -0.474 4.474 19 H 0.083 0.917 20 C -0.181 4.181 21 N -0.437 5.437 22 Si 0.797 3.203 23 H -0.192 1.192 24 H -0.185 1.185 25 H -0.180 1.180 26 C -0.235 4.235 27 H 0.082 0.918 28 H 0.134 0.866 29 H 0.075 0.925 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.264 0.736 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.445 7.452 -6.851 11.494 hybrid contribution 0.868 -0.319 -1.009 1.369 sum -4.577 7.133 -7.859 11.559 Atomic orbital electron populations 1.23221 0.77202 1.04802 1.01876 1.86011 1.23090 1.27784 1.89188 1.19061 0.91909 0.84274 0.95443 1.20649 0.99469 0.90503 1.20707 1.20477 0.90921 0.97797 0.97056 1.17469 0.91119 0.81352 1.23025 1.44833 1.25564 1.09231 1.24674 1.77674 1.07068 1.13426 1.18002 1.20157 0.94407 0.88843 0.94841 1.84770 1.21415 1.63879 1.57246 1.19982 1.03849 0.99417 1.04127 1.19632 1.00062 0.89859 0.95984 1.21614 0.99267 0.89596 0.95221 1.58669 1.15571 1.27741 1.36544 1.21720 1.00104 0.87046 0.95639 1.20570 0.94993 1.03842 0.94772 1.17421 0.93642 0.89432 0.87582 1.19421 0.91320 1.04357 1.32281 0.91664 1.26710 1.05838 0.93372 0.92151 1.69858 1.40288 1.11480 1.22110 0.85338 0.76142 0.78924 0.79910 1.19245 1.18474 1.17987 1.20398 0.90882 0.97909 1.14290 0.91756 0.86633 0.92546 0.83788 0.85196 0.73608 0.90004 0.91415 0.92603 0.95588 0.83762 0.83807 0.88280 0.87855 0.91467 0.89878 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.81 113.37 1.11 1.73 16 2 O -0.35 -14.00 10.49 -92.73 -0.97 -14.98 16 3 C 0.14 6.30 6.67 22.47 0.15 6.45 16 4 C -0.29 -11.55 9.03 22.52 0.20 -11.34 16 5 C -0.04 -1.72 8.49 22.33 0.19 -1.53 16 6 C -0.04 -1.83 5.96 38.81 0.23 -1.60 16 7 N -0.27 -12.18 3.27 -174.37 -0.57 -12.75 16 8 N -0.33 -16.38 10.99 -170.39 -1.87 -18.25 16 9 C 0.22 9.18 8.41 85.33 0.72 9.90 16 10 O -0.47 -16.66 13.65 -92.84 -1.27 -17.93 16 11 C -0.26 -8.99 5.37 -20.02 -0.11 -9.10 16 12 C -0.02 -0.42 5.63 29.85 0.17 -0.25 16 13 C 0.07 1.65 6.77 86.30 0.58 2.23 16 14 N -0.85 -14.85 9.62 -186.72 -1.80 -16.65 16 15 C 0.08 2.95 6.77 41.23 0.28 3.23 16 16 C -0.08 -2.15 8.69 71.23 0.62 -1.53 16 17 C 0.12 6.71 5.56 -21.20 -0.12 6.59 16 18 C -0.45 -24.68 7.93 23.38 0.19 -24.49 16 19 H 0.07 3.69 7.10 -2.91 -0.02 3.67 16 20 C 0.04 1.86 5.24 85.25 0.45 2.30 16 21 N -0.81 -43.73 10.85 21.83 0.24 -43.49 16 22 Si 0.98 40.30 29.58 68.60 2.03 42.32 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 25 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 26 C -0.21 -11.35 8.58 22.79 0.20 -11.16 16 27 H 0.06 1.49 7.65 -2.39 -0.02 1.47 16 28 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.06 1.40 7.65 -2.38 -0.02 1.39 16 30 H 0.14 4.49 6.26 -2.91 -0.02 4.47 16 31 H 0.13 4.45 7.47 -2.91 -0.02 4.42 16 32 H 0.41 10.55 9.06 -74.06 -0.67 9.88 16 33 H 0.08 1.71 7.89 -2.39 -0.02 1.69 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.35 4.93 9.08 -89.69 -0.81 4.12 16 38 H 0.35 4.80 8.99 -89.69 -0.81 4.00 16 39 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.10 2.04 8.01 -2.39 -0.02 2.02 16 41 H 0.07 1.89 7.19 -2.38 -0.02 1.88 16 42 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 43 H 0.11 6.30 6.20 -2.91 -0.02 6.28 16 Total: -1.00 -72.05 360.22 -0.57 -72.61 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -1.21 Total: 37.68 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 4.86 Total: -28.58 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -4.00 Total: -91.13 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -2.24 Total: -32.91 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Total: -72.05 -0.57 -72.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170342968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.812 kcal (2) G-P(sol) polarization free energy of solvation -72.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds