Wall clock time and date at job start Tue Mar 31 2020 11:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35972 * 116.99683 * 2 1 4 4 C 1.38748 * 119.98753 * 0.02714 * 3 2 1 5 5 C 1.38068 * 120.01249 * 179.76772 * 4 3 2 6 6 C 1.38857 * 119.98906 * 0.45924 * 5 4 3 7 7 N 1.40156 * 120.01629 * 179.79091 * 6 5 4 8 8 C 1.34774 * 119.99650 * 335.18193 * 7 6 5 9 9 O 1.21592 * 120.00439 * 354.33537 * 8 7 6 10 10 N 1.34780 * 119.99605 * 174.06734 * 8 7 6 11 11 C 1.46502 * 119.99859 * 180.27032 * 10 8 7 12 12 C 1.50705 * 109.46884 * 90.00263 * 11 10 8 13 13 H 1.08002 * 119.99828 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99722 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00328 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99949 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46790 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47307 * 119.99492 * 16 14 12 19 19 H 1.48502 * 109.47058 * 240.00051 * 16 14 12 20 20 C 1.46494 * 120.00131 * 0.27486 * 10 8 7 21 21 C 1.53003 * 109.47697 * 89.99783 * 20 10 8 22 22 C 1.47194 * 109.47355 * 180.02562 * 21 20 10 23 23 N 9.09982 * 166.59121 * 189.53519 * 3 1 2 24 24 C 1.38814 * 119.96778 * 359.51762 * 6 5 4 25 25 C 1.50699 * 120.00423 * 180.27438 * 24 6 5 26 26 C 1.38118 * 119.98929 * 0.25043 * 24 6 5 27 27 H 1.09004 * 109.46641 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47233 * 299.99427 * 1 2 3 29 29 H 1.09000 * 109.47614 * 59.99826 * 1 2 3 30 30 H 1.07998 * 119.98758 * 0.02562 * 4 3 2 31 31 H 1.08001 * 120.00637 * 180.25340 * 5 4 3 32 32 H 0.97001 * 119.99833 * 155.17623 * 7 6 5 33 33 H 1.09003 * 109.47053 * 209.99769 * 11 10 8 34 34 H 1.08999 * 109.47331 * 330.00101 * 11 10 8 35 35 H 0.97003 * 120.00183 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.47139 * 210.00198 * 20 10 8 37 37 H 1.09006 * 109.47031 * 329.99376 * 20 10 8 38 38 H 1.09000 * 109.46574 * 299.99955 * 21 20 10 39 39 H 1.09001 * 109.46772 * 59.99871 * 21 20 10 40 40 H 1.08998 * 109.47467 * 89.99788 * 25 24 6 41 41 H 1.08996 * 109.47331 * 209.99879 * 25 24 6 42 42 H 1.08998 * 109.47689 * 329.99995 * 25 24 6 43 43 H 1.07998 * 119.99240 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2903 2.3750 0.0006 5 6 1.9165 3.6055 0.0054 6 6 3.3031 3.6786 0.0001 7 7 3.9393 4.9274 0.0006 8 6 3.2993 6.0099 -0.4842 9 8 2.2126 5.8865 -1.0154 10 7 3.8615 7.2300 -0.3753 11 6 3.1631 8.4075 -0.8969 12 6 2.2884 8.9917 0.1822 13 1 2.2556 8.5316 1.1588 14 6 1.5291 10.1129 -0.0775 15 7 1.5687 10.6728 -1.2668 16 14 0.4453 10.8375 1.2603 17 1 0.5790 10.0280 2.4981 18 1 0.8653 12.2351 1.5347 19 1 -0.9702 10.8248 0.8116 20 6 5.1709 7.3788 0.2646 21 6 6.2718 7.2473 -0.7897 22 6 7.5874 7.3962 -0.1466 23 7 8.6028 7.5121 0.3496 24 6 4.0589 2.5142 0.0000 25 6 5.5638 2.5926 0.0005 26 6 3.4313 1.2839 0.0000 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.2118 2.3179 0.0014 31 1 1.3279 4.5110 0.0100 32 1 4.8403 5.0126 0.3499 33 1 3.8933 9.1516 -1.2152 34 1 2.5461 8.1170 -1.7472 35 1 1.0348 11.4618 -1.4495 36 1 5.2352 8.3590 0.7369 37 1 5.2965 6.6028 1.0198 38 1 6.2074 6.2670 -1.2619 39 1 6.1462 8.0233 -1.5448 40 1 5.9264 2.6113 1.0282 41 1 5.9731 1.7229 -0.5134 42 1 5.8806 3.5004 -0.5130 43 1 4.0192 0.3779 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202723605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:54 Heat of formation + Delta-G solvation = -4.629435 kcal Electronic energy + Delta-G solvation = -26169.680956 eV Core-core repulsion = 22409.020145 eV Total energy + Delta-G solvation = -3760.660811 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66144 -39.56162 -37.73254 -36.89216 -35.36987 -34.16938 -32.79897 -32.42757 -30.96235 -29.60495 -27.67897 -26.67211 -26.55752 -24.16077 -23.45851 -22.25578 -20.98097 -19.49389 -18.15113 -17.73900 -17.55836 -16.88188 -16.48298 -16.01180 -15.73278 -15.27983 -14.82440 -14.75255 -14.21104 -14.14775 -14.04336 -13.81551 -13.64280 -13.22663 -13.12172 -12.73816 -12.60863 -12.41038 -12.38720 -12.19687 -12.05075 -11.86089 -11.84475 -11.32142 -11.27223 -11.05210 -10.93572 -10.82350 -10.67025 -10.21008 -9.80492 -9.72154 -9.29196 -8.68413 -8.50421 -7.99337 -7.38607 -6.11765 -4.16384 1.38815 1.57555 2.66471 2.75029 3.03826 3.26155 3.29642 3.34569 3.38387 3.55352 3.86124 4.01848 4.35720 4.46054 4.81204 4.90456 4.92259 5.02147 5.05073 5.08120 5.13175 5.23359 5.31404 5.32183 5.37761 5.43833 5.49872 5.68639 5.73150 5.81212 5.96674 6.08439 6.15012 6.39917 6.54338 6.64587 6.73767 7.05240 7.23445 7.34833 7.47596 7.51145 7.56134 7.85513 8.13518 8.39111 8.84381 9.07923 9.49580 10.96161 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009814 B = 0.004166 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.375586 B = 6720.058805 C = 9146.702760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.097 3.903 4 C -0.187 4.187 5 C -0.088 4.088 6 C 0.147 3.853 7 N -0.691 5.691 8 C 0.699 3.301 9 O -0.560 6.560 10 N -0.605 5.605 11 C 0.258 3.742 12 C -0.529 4.529 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.116 3.884 21 C -0.053 4.053 22 C 0.215 3.785 23 N -0.442 5.442 24 C -0.092 4.092 25 C -0.112 4.112 26 C -0.132 4.132 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.127 0.873 31 H 0.156 0.844 32 H 0.400 0.600 33 H 0.037 0.963 34 H 0.049 0.951 35 H 0.263 0.737 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.120 0.880 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.669 -16.858 1.824 17.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.237 6.237 3 C 0.052 3.948 4 C -0.207 4.207 5 C -0.108 4.108 6 C 0.051 3.949 7 N -0.340 5.340 8 C 0.401 3.599 9 O -0.436 6.436 10 N -0.339 5.339 11 C 0.140 3.860 12 C -0.568 4.568 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.010 4.010 21 C -0.095 4.095 22 C -0.103 4.103 23 N -0.119 5.119 24 C -0.095 4.095 25 C -0.169 4.169 26 C -0.151 4.151 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.145 0.855 31 H 0.174 0.826 32 H 0.237 0.763 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.138 0.862 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.385 -16.656 2.053 17.625 hybrid contribution -0.874 0.692 0.642 1.286 sum 4.510 -15.964 2.694 16.806 Atomic orbital electron populations 1.23000 0.78760 1.03440 1.01473 1.86021 1.21066 1.27158 1.89428 1.18910 0.92199 0.84019 0.99662 1.21152 0.99968 0.91770 1.07779 1.21404 0.93305 0.98816 0.97270 1.17316 0.91686 0.83635 1.02252 1.42985 1.19137 1.06214 1.65651 1.15942 0.84188 0.80212 0.79516 1.90872 1.20267 1.84108 1.48319 1.47597 1.18420 1.06822 1.61070 1.19333 0.91952 0.79424 0.95337 1.21469 1.25742 1.11208 0.98383 0.92293 1.24898 0.96646 0.96710 0.95641 1.69923 1.40999 1.21638 1.20626 0.86468 0.80472 0.78755 0.81877 1.19824 1.20985 1.20889 1.21278 0.82128 1.04542 0.93096 1.19939 0.84017 1.05968 0.99533 1.29073 0.94620 0.92983 0.93622 1.81220 1.12235 1.09165 1.09284 1.19277 0.95651 0.90981 1.03584 1.20702 0.90882 1.02968 1.02305 1.19909 0.91147 0.97136 1.06949 0.88643 0.92761 0.92680 0.85485 0.82622 0.76315 0.94476 0.93318 0.92695 0.88195 0.91285 0.87710 0.86170 0.91100 0.91029 0.91690 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.32 -3.90 10.50 -19.65 -0.21 -4.11 16 3 C 0.10 1.29 6.69 -39.22 -0.26 1.03 16 4 C -0.19 -2.61 9.03 -39.46 -0.36 -2.97 16 5 C -0.09 -1.42 8.71 -39.41 -0.34 -1.76 16 6 C 0.15 2.17 6.41 -83.61 -0.54 1.64 16 7 N -0.69 -9.89 4.82 -14.18 -0.07 -9.96 16 8 C 0.70 12.96 8.08 -86.92 -0.70 12.26 16 9 O -0.56 -12.78 13.09 5.28 0.07 -12.71 16 10 N -0.60 -10.78 2.46 -180.80 -0.44 -11.22 16 11 C 0.26 5.94 5.16 -5.19 -0.03 5.91 16 12 C -0.53 -13.80 9.39 -34.44 -0.32 -14.12 16 13 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -25.01 13.29 55.43 0.74 -24.27 16 16 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.12 1.48 5.08 -4.04 -0.02 1.46 16 21 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 22 C 0.22 2.45 15.43 -20.76 -0.32 2.13 16 23 N -0.44 -6.20 18.54 42.15 0.78 -5.41 16 24 C -0.09 -1.12 5.89 -104.45 -0.62 -1.74 16 25 C -0.11 -0.99 9.45 36.00 0.34 -0.65 16 26 C -0.13 -1.63 9.63 -39.46 -0.38 -2.01 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.13 1.53 6.29 -52.49 -0.33 1.20 16 31 H 0.16 2.95 5.79 -52.49 -0.30 2.65 16 32 H 0.40 4.43 5.20 -40.82 -0.21 4.22 16 33 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 37 H 0.07 0.73 6.45 -51.93 -0.33 0.40 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 42 H 0.06 0.54 6.97 -51.93 -0.36 0.18 16 43 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -32.82 368.21 -7.08 -39.89 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.64 Total: 3.02 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.83 Total: 3.32 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 1.01 Total: -50.86 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.14 Total: -16.82 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.82 -7.08 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202723605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.261 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds