Wall clock time and date at job start Tue Mar 31 2020 11:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35990 * 116.99686 * 2 1 4 4 C 1.38542 * 120.08139 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.01167 * 179.97438 * 4 3 2 6 6 C 1.38274 * 120.17944 * 359.97438 * 5 4 3 7 7 C 1.50692 * 119.92331 * 179.97438 * 6 5 4 8 8 C 1.38214 * 120.15812 * 359.77032 * 6 5 4 9 9 C 1.38712 * 119.98268 * 0.50691 * 8 6 5 10 10 N 1.40171 * 120.08633 * 179.74297 * 9 8 6 11 11 C 1.34782 * 119.99690 * 325.34996 * 10 9 8 12 12 O 1.21585 * 120.00298 * 4.43504 * 11 10 9 13 13 N 1.34773 * 119.99717 * 184.43467 * 11 10 9 14 14 C 1.46499 * 120.00257 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.46988 * 89.99974 * 14 13 11 16 16 H 1.08001 * 119.99554 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99930 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99971 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47065 * 89.99855 * 19 17 15 21 21 H 1.48496 * 109.47027 * 210.00172 * 19 17 15 22 22 H 1.48500 * 109.46901 * 329.99868 * 19 17 15 23 23 C 1.46508 * 119.99958 * 0.02562 * 13 11 10 24 24 C 1.52994 * 109.47155 * 89.99886 * 23 13 11 25 25 C 1.47204 * 109.46861 * 179.97438 * 24 23 13 26 26 N 5.70017 * 113.96723 * 179.68772 * 2 1 3 27 27 H 1.08999 * 109.46452 * 299.99512 * 1 2 3 28 28 H 1.09002 * 109.46973 * 59.99938 * 1 2 3 29 29 H 1.08997 * 109.46710 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99443 * 0.02562 * 4 3 2 31 31 H 1.07994 * 119.91531 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.47319 * 90.00340 * 7 6 5 33 33 H 1.09001 * 109.47420 * 210.00575 * 7 6 5 34 34 H 1.09007 * 109.47339 * 330.00352 * 7 6 5 35 35 H 1.07993 * 120.00837 * 180.27445 * 8 6 5 36 36 H 0.96995 * 120.00097 * 145.61847 * 10 9 8 37 37 H 1.08995 * 109.47278 * 209.99949 * 14 13 11 38 38 H 1.08996 * 109.46959 * 330.00360 * 14 13 11 39 39 H 0.97003 * 119.99624 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.46521 * 210.00251 * 23 13 11 41 41 H 1.09002 * 109.46791 * 329.99742 * 23 13 11 42 42 H 1.08998 * 109.47150 * 300.00045 * 24 23 13 43 43 H 1.09002 * 109.47389 * 60.00222 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3747 0.0005 5 6 1.9225 3.6057 0.0011 6 6 3.3032 3.6808 0.0016 7 6 3.9829 5.0257 0.0016 8 6 4.0614 2.5252 0.0064 9 6 3.4372 1.2865 0.0001 10 7 4.2041 0.1132 -0.0005 11 6 5.3792 0.0766 -0.6597 12 8 5.8129 1.0833 -1.1856 13 7 6.0734 -1.0761 -0.7357 14 6 7.3504 -1.1162 -1.4526 15 6 8.4724 -0.7970 -0.4983 16 1 8.2558 -0.5860 0.5385 17 6 9.7752 -0.7746 -0.9489 18 7 10.7542 -0.4956 -0.1163 19 14 10.1497 -1.1390 -2.7424 20 1 10.1205 0.1252 -3.5210 21 1 11.4957 -1.7566 -2.8515 22 1 9.1304 -2.0754 -3.2805 23 6 5.5505 -2.2893 -0.1024 24 6 4.6749 -3.0490 -1.1009 25 6 4.1500 -4.2683 -0.4648 26 7 3.7446 -5.2086 0.0284 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2148 2.3195 0.0014 31 1 1.3340 4.5113 0.0019 32 1 4.1464 5.3502 1.0293 33 1 4.9412 4.9486 -0.5119 34 1 3.3526 5.7514 -0.5126 35 1 5.1396 2.5867 0.0113 36 1 3.8873 -0.6735 0.4701 37 1 7.5012 -2.1113 -1.8709 38 1 7.3383 -0.3816 -2.2577 39 1 11.6709 -0.4802 -0.4333 40 1 6.3808 -2.9234 0.2087 41 1 4.9552 -2.0166 0.7690 42 1 3.8448 -2.4148 -1.4121 43 1 5.2702 -3.3217 -1.9723 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202861616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:56 Heat of formation + Delta-G solvation = -1.615298 kcal Electronic energy + Delta-G solvation = -26479.506316 eV Core-core repulsion = 22718.976208 eV Total energy + Delta-G solvation = -3760.530108 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.71846 -39.44330 -37.64127 -36.90227 -35.47169 -34.62364 -32.72617 -31.66215 -31.04868 -29.86587 -27.96467 -27.61280 -25.89079 -24.17882 -23.33018 -21.97522 -21.06210 -19.41027 -18.38062 -17.88308 -17.39603 -16.84445 -16.65141 -16.12135 -15.83231 -15.22288 -14.81153 -14.64981 -14.28126 -14.09660 -14.04426 -13.75006 -13.64967 -13.53618 -13.32012 -12.63719 -12.55711 -12.41094 -12.28375 -12.22873 -11.95644 -11.88283 -11.59544 -11.52300 -11.21775 -11.07760 -10.92800 -10.91314 -10.55881 -10.26016 -10.02961 -9.61387 -9.36650 -8.61272 -8.39757 -7.99364 -7.56459 -6.10749 -4.10213 1.41013 1.46455 2.67350 2.77643 2.99570 3.19467 3.28212 3.33465 3.36698 3.56127 3.87556 3.95259 4.36934 4.40966 4.75963 4.88161 4.94048 4.97517 4.99964 5.06331 5.15194 5.22053 5.29266 5.37477 5.38178 5.46626 5.69879 5.72809 5.76754 5.95937 6.01380 6.02478 6.21828 6.29370 6.47282 6.61359 6.78690 6.82996 6.96930 7.14361 7.38697 7.43484 7.53826 7.57407 8.34083 8.44092 8.92593 9.06013 9.48833 11.02530 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.004680 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.605719 B = 5981.666857 C = 8256.979349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.085 3.915 4 C -0.188 4.188 5 C -0.107 4.107 6 C -0.102 4.102 7 C -0.109 4.109 8 C -0.085 4.085 9 C 0.155 3.845 10 N -0.687 5.687 11 C 0.704 3.296 12 O -0.563 6.563 13 N -0.601 5.601 14 C 0.229 3.771 15 C -0.531 4.531 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.896 5.896 19 Si 0.875 3.125 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.265 1.265 23 C 0.118 3.882 24 C -0.052 4.052 25 C 0.217 3.783 26 N -0.442 5.442 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.154 0.846 36 H 0.404 0.596 37 H 0.034 0.966 38 H 0.042 0.958 39 H 0.265 0.735 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.281 3.741 -0.679 20.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.233 6.233 3 C 0.038 3.962 4 C -0.207 4.207 5 C -0.126 4.126 6 C -0.103 4.103 7 C -0.166 4.166 8 C -0.106 4.106 9 C 0.058 3.942 10 N -0.337 5.337 11 C 0.406 3.594 12 O -0.439 6.439 13 N -0.335 5.335 14 C 0.109 3.891 15 C -0.570 4.570 16 H 0.094 0.906 17 C -0.129 4.129 18 N -0.534 5.534 19 Si 0.702 3.298 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.190 1.190 23 C -0.008 4.008 24 C -0.094 4.094 25 C -0.102 4.102 26 N -0.120 5.120 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.145 0.855 31 H 0.139 0.861 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.171 0.829 36 H 0.241 0.759 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.127 0.873 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.172 2.826 -0.364 20.373 hybrid contribution 0.026 -0.157 -0.807 0.823 sum -20.147 2.669 -1.171 20.356 Atomic orbital electron populations 1.22991 0.78644 1.03634 1.01151 1.86018 1.21102 1.26698 1.89490 1.18736 0.90440 0.84786 1.02256 1.20914 0.99415 0.91813 1.08605 1.20722 0.93918 0.96754 1.01251 1.19749 0.93254 0.95438 1.01858 1.20724 1.00739 0.93043 1.02113 1.21268 1.01956 0.89215 0.98135 1.16835 0.86123 0.86941 1.04266 1.42727 1.21460 1.14035 1.55500 1.15837 0.79643 0.84443 0.79428 1.90893 1.69079 1.32526 1.51352 1.47170 1.23129 1.06047 1.57127 1.19679 0.79067 0.97456 0.92897 1.21332 0.89813 1.48372 0.97477 0.90630 1.24837 0.96085 0.94528 0.97428 1.69894 0.99825 1.48701 1.34993 0.86883 0.77978 0.79210 0.85773 1.19879 1.21164 1.18971 1.21278 0.98242 0.87914 0.93381 1.19914 1.01161 0.88389 0.99923 1.29065 0.93125 0.94395 0.93577 1.81235 1.09776 1.11715 1.09243 0.92855 0.92812 0.88516 0.85538 0.86130 0.91441 0.91122 0.91918 0.82863 0.75857 0.94789 0.94049 0.92535 0.88090 0.91010 0.87337 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.67 10.05 -19.71 -0.20 -3.87 16 3 C 0.08 1.11 6.70 -39.08 -0.26 0.84 16 4 C -0.19 -2.10 9.04 -39.47 -0.36 -2.45 16 5 C -0.11 -1.21 9.69 -39.56 -0.38 -1.60 16 6 C -0.10 -1.35 5.88 -104.62 -0.62 -1.96 16 7 C -0.11 -1.20 10.01 36.00 0.36 -0.84 16 8 C -0.09 -1.36 8.35 -39.42 -0.33 -1.69 16 9 C 0.15 2.38 6.32 -83.48 -0.53 1.85 16 10 N -0.69 -10.60 5.08 -14.10 -0.07 -10.68 16 11 C 0.70 13.41 8.13 -86.92 -0.71 12.70 16 12 O -0.56 -12.90 13.34 5.29 0.07 -12.83 16 13 N -0.60 -10.89 2.46 -180.80 -0.44 -11.33 16 14 C 0.23 5.05 4.23 -5.19 -0.02 5.03 16 15 C -0.53 -14.30 9.94 -34.44 -0.34 -14.64 16 16 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -26.75 13.96 55.43 0.77 -25.98 16 19 Si 0.87 20.52 27.47 -169.99 -4.67 15.85 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 23 C 0.12 1.58 5.16 -4.04 -0.02 1.56 16 24 C -0.05 -0.54 6.03 -29.52 -0.18 -0.72 16 25 C 0.22 2.60 15.44 -20.74 -0.32 2.28 16 26 N -0.44 -6.44 18.54 42.18 0.78 -5.66 16 27 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.13 1.06 6.30 -52.48 -0.33 0.73 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.06 0.56 8.08 -51.92 -0.42 0.14 16 35 H 0.15 2.86 6.20 -52.49 -0.33 2.53 16 36 H 0.40 5.24 6.25 -40.82 -0.26 4.98 16 37 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 38 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 40 H 0.10 1.41 8.07 -51.93 -0.42 0.99 16 41 H 0.07 0.83 6.30 -51.93 -0.33 0.51 16 42 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -34.03 367.42 -6.75 -40.79 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.72 Total: 4.64 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -2.81 Total: 3.53 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 1.04 Total: -53.64 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.13 Total: -16.70 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.03 -6.75 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202861616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.170 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds