Wall clock time and date at job start Tue Mar 31 2020 11:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35990 * 116.99686 * 2 1 4 4 C 1.38542 * 120.08139 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.01167 * 179.97438 * 4 3 2 6 6 C 1.38274 * 120.17944 * 359.97438 * 5 4 3 7 7 C 1.50692 * 119.92331 * 179.97438 * 6 5 4 8 8 C 1.38214 * 120.15812 * 359.77032 * 6 5 4 9 9 C 1.38712 * 119.98268 * 0.50691 * 8 6 5 10 10 N 1.40171 * 120.08633 * 179.74297 * 9 8 6 11 11 C 1.34782 * 119.99690 * 325.34996 * 10 9 8 12 12 O 1.21585 * 120.00298 * 4.43504 * 11 10 9 13 13 N 1.34773 * 119.99717 * 184.43467 * 11 10 9 14 14 C 1.46499 * 120.00257 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.46988 * 89.99974 * 14 13 11 16 16 H 1.08001 * 119.99554 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99930 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99971 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47065 * 89.99855 * 19 17 15 21 21 H 1.48496 * 109.47027 * 210.00172 * 19 17 15 22 22 H 1.48500 * 109.46901 * 329.99868 * 19 17 15 23 23 C 1.46508 * 119.99958 * 0.02562 * 13 11 10 24 24 C 1.52994 * 109.47155 * 89.99886 * 23 13 11 25 25 C 1.47204 * 109.46861 * 179.97438 * 24 23 13 26 26 N 5.70017 * 113.96723 * 179.68772 * 2 1 3 27 27 H 1.08999 * 109.46452 * 299.99512 * 1 2 3 28 28 H 1.09002 * 109.46973 * 59.99938 * 1 2 3 29 29 H 1.08997 * 109.46710 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99443 * 0.02562 * 4 3 2 31 31 H 1.07994 * 119.91531 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.47319 * 90.00340 * 7 6 5 33 33 H 1.09001 * 109.47420 * 210.00575 * 7 6 5 34 34 H 1.09007 * 109.47339 * 330.00352 * 7 6 5 35 35 H 1.07993 * 120.00837 * 180.27445 * 8 6 5 36 36 H 0.96995 * 120.00097 * 145.61847 * 10 9 8 37 37 H 1.08995 * 109.47278 * 209.99949 * 14 13 11 38 38 H 1.08996 * 109.46959 * 330.00360 * 14 13 11 39 39 H 0.97003 * 119.99624 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.46521 * 210.00251 * 23 13 11 41 41 H 1.09002 * 109.46791 * 329.99742 * 23 13 11 42 42 H 1.08998 * 109.47150 * 300.00045 * 24 23 13 43 43 H 1.09002 * 109.47389 * 60.00222 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3747 0.0005 5 6 1.9225 3.6057 0.0011 6 6 3.3032 3.6808 0.0016 7 6 3.9829 5.0257 0.0016 8 6 4.0614 2.5252 0.0064 9 6 3.4372 1.2865 0.0001 10 7 4.2041 0.1132 -0.0005 11 6 5.3792 0.0766 -0.6597 12 8 5.8129 1.0833 -1.1856 13 7 6.0734 -1.0761 -0.7357 14 6 7.3504 -1.1162 -1.4526 15 6 8.4724 -0.7970 -0.4983 16 1 8.2558 -0.5860 0.5385 17 6 9.7752 -0.7746 -0.9489 18 7 10.7542 -0.4956 -0.1163 19 14 10.1497 -1.1390 -2.7424 20 1 10.1205 0.1252 -3.5210 21 1 11.4957 -1.7566 -2.8515 22 1 9.1304 -2.0754 -3.2805 23 6 5.5505 -2.2893 -0.1024 24 6 4.6749 -3.0490 -1.1009 25 6 4.1500 -4.2683 -0.4648 26 7 3.7446 -5.2086 0.0284 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2148 2.3195 0.0014 31 1 1.3340 4.5113 0.0019 32 1 4.1464 5.3502 1.0293 33 1 4.9412 4.9486 -0.5119 34 1 3.3526 5.7514 -0.5126 35 1 5.1396 2.5867 0.0113 36 1 3.8873 -0.6735 0.4701 37 1 7.5012 -2.1113 -1.8709 38 1 7.3383 -0.3816 -2.2577 39 1 11.6709 -0.4802 -0.4333 40 1 6.3808 -2.9234 0.2087 41 1 4.9552 -2.0166 0.7690 42 1 3.8448 -2.4148 -1.4121 43 1 5.2702 -3.3217 -1.9723 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202861616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:55 Heat of formation + Delta-G solvation = -23.657093 kcal Electronic energy + Delta-G solvation = -26480.462120 eV Core-core repulsion = 22718.976208 eV Total energy + Delta-G solvation = -3761.485912 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.89741 -40.60126 -38.58363 -38.00033 -36.82049 -35.95974 -34.68757 -32.60822 -32.35509 -31.08914 -29.28937 -28.66591 -26.74221 -25.36138 -24.91070 -23.26848 -22.12865 -20.77919 -19.49645 -19.17672 -18.73717 -18.35769 -17.88511 -17.10186 -16.71182 -16.49526 -16.30506 -15.85928 -15.48879 -15.26264 -15.22385 -14.93950 -14.75157 -14.50965 -14.46744 -14.34273 -13.77385 -13.67553 -13.37974 -13.21695 -13.11582 -13.00056 -12.78607 -12.69946 -12.44469 -12.38001 -12.11744 -11.99234 -11.91541 -11.74527 -11.66788 -11.25430 -10.88140 -10.74445 -9.63950 -9.34348 -8.63574 -8.25468 -6.30160 0.37936 0.47096 1.40245 1.45541 1.51598 1.58268 1.79935 1.81600 2.20757 2.37633 2.38866 2.79026 2.86483 3.10891 3.27090 3.92355 3.93215 4.02630 4.04109 4.20127 4.35902 4.44101 4.49462 4.51305 4.52638 4.72649 4.77577 4.81795 4.84158 4.88132 4.92511 5.00343 5.03849 5.13658 5.26164 5.34778 5.53179 5.56716 5.58921 5.78487 5.93567 5.99884 6.33449 6.50838 6.57898 6.72535 6.99576 7.31446 7.62779 8.91604 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.004680 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.605719 B = 5981.666857 C = 8256.979349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.090 3.910 4 C -0.181 4.181 5 C -0.097 4.097 6 C -0.114 4.114 7 C -0.108 4.108 8 C -0.113 4.113 9 C 0.121 3.879 10 N -0.671 5.671 11 C 0.700 3.300 12 O -0.610 6.610 13 N -0.603 5.603 14 C 0.239 3.761 15 C -0.533 4.533 16 H 0.027 0.973 17 C 0.010 3.990 18 N -0.950 5.950 19 Si 0.944 3.056 20 H -0.279 1.279 21 H -0.283 1.283 22 H -0.225 1.225 23 C 0.113 3.887 24 C -0.036 4.036 25 C 0.244 3.756 26 N -0.484 5.484 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.163 0.837 31 H 0.157 0.843 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.415 0.585 37 H 0.066 0.934 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.127 0.873 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.857 3.267 -2.197 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.043 3.957 4 C -0.200 4.200 5 C -0.115 4.115 6 C -0.115 4.115 7 C -0.165 4.165 8 C -0.134 4.134 9 C 0.026 3.974 10 N -0.322 5.322 11 C 0.402 3.598 12 O -0.489 6.489 13 N -0.336 5.336 14 C 0.117 3.883 15 C -0.572 4.572 16 H 0.045 0.955 17 C -0.187 4.187 18 N -0.590 5.590 19 Si 0.767 3.233 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.148 1.148 23 C -0.011 4.011 24 C -0.077 4.077 25 C -0.073 4.073 26 N -0.162 5.162 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.132 0.868 30 H 0.181 0.819 31 H 0.174 0.826 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.255 0.745 37 H 0.084 0.916 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.145 0.855 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.832 2.308 -1.847 24.015 hybrid contribution 1.013 0.078 -0.195 1.035 sum -22.819 2.385 -2.042 23.034 Atomic orbital electron populations 1.23330 0.76292 1.05363 1.02421 1.86003 1.23466 1.25941 1.89182 1.18740 0.89505 0.86181 1.01314 1.21353 1.01122 0.90867 1.06673 1.21122 0.93002 0.98399 0.98998 1.19998 0.94443 0.95147 1.01910 1.20750 1.00125 0.92793 1.02799 1.21080 1.00357 0.91174 1.00741 1.17050 0.87461 0.86345 1.06546 1.42434 1.20301 1.14769 1.54692 1.16019 0.80437 0.83926 0.79373 1.90864 1.70462 1.34224 1.53394 1.47014 1.22035 1.07405 1.57189 1.19382 0.79093 0.98317 0.91537 1.21619 0.91764 1.47484 0.96315 0.95459 1.25833 0.95819 0.94402 1.02691 1.70068 1.00389 1.50880 1.37699 0.85769 0.78755 0.79525 0.79221 1.20463 1.20918 1.14792 1.21467 0.98775 0.86320 0.94580 1.19809 1.01319 0.87471 0.99119 1.29104 0.91901 0.93875 0.92435 1.81276 1.11361 1.13146 1.10452 0.91404 0.91574 0.86775 0.81916 0.82575 0.90515 0.93220 0.89306 0.86985 0.74533 0.91576 0.95463 0.92538 0.88691 0.89459 0.85505 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.71 10.05 -93.44 -0.94 -7.65 16 3 C 0.09 2.17 6.70 22.59 0.15 2.32 16 4 C -0.18 -3.40 9.04 22.34 0.20 -3.20 16 5 C -0.10 -1.89 9.69 22.28 0.22 -1.68 16 6 C -0.11 -2.97 5.88 -19.86 -0.12 -3.09 16 7 C -0.11 -2.35 10.01 71.23 0.71 -1.63 16 8 C -0.11 -3.80 8.35 22.38 0.19 -3.61 16 9 C 0.12 3.77 6.32 38.17 0.24 4.01 16 10 N -0.67 -20.98 5.08 -316.79 -1.61 -22.59 16 11 C 0.70 27.52 8.13 179.05 1.45 28.98 16 12 O -0.61 -29.65 13.34 -3.98 -0.05 -29.70 16 13 N -0.60 -21.93 2.46 -844.19 -2.07 -24.00 16 14 C 0.24 10.48 4.23 85.63 0.36 10.84 16 15 C -0.53 -29.78 9.94 25.60 0.25 -29.53 16 16 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 17 C 0.01 0.57 5.47 84.65 0.46 1.04 16 18 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 19 Si 0.94 42.37 27.47 68.60 1.88 44.26 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.23 -8.61 6.54 99.48 0.65 -7.96 16 23 C 0.11 2.90 5.16 86.38 0.45 3.35 16 24 C -0.04 -0.65 6.03 28.79 0.17 -0.48 16 25 C 0.24 5.31 15.44 89.44 1.38 6.69 16 26 N -0.48 -13.33 18.54 20.01 0.37 -12.96 16 27 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 28 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 29 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.16 1.85 6.30 -2.91 -0.02 1.83 16 31 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.26 8.09 -2.39 -0.02 1.24 16 34 H 0.09 1.43 8.08 -2.38 -0.02 1.41 16 35 H 0.11 4.66 6.20 -2.91 -0.02 4.65 16 36 H 0.42 10.53 6.25 -92.71 -0.58 9.95 16 37 H 0.07 2.50 7.13 -2.39 -0.02 2.49 16 38 H 0.03 1.29 6.85 -2.39 -0.02 1.28 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.09 2.58 8.07 -2.38 -0.02 2.56 16 41 H 0.09 1.94 6.30 -2.39 -0.02 1.93 16 42 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -80.39 367.42 5.53 -74.86 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.41 Total: 21.35 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 7.24 Total: 15.33 kcal Atomic # 7 Polarization: -115.44 SS G_CDS: -3.01 Total: -118.45 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.99 Total: -37.35 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.88 Total: 44.26 kcal Total: -80.39 5.53 -74.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202861616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.201 kcal (2) G-P(sol) polarization free energy of solvation -80.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds