Wall clock time and date at job start Tue Mar 31 2020 11:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00297 * 2 1 4 4 H 1.48503 * 109.46955 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47110 * 299.99692 * 3 2 1 6 6 H 1.48499 * 109.47345 * 59.99852 * 3 2 1 7 7 C 1.37880 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00293 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.53503 * 114.20596 * 179.97438 * 9 7 2 11 11 N 1.47066 * 87.98476 * 139.85062 * 10 9 7 12 12 C 1.34781 * 136.05335 * 152.84661 * 11 10 9 13 13 O 1.21275 * 120.00564 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99608 * 179.97438 * 12 11 10 15 15 C 1.53006 * 119.52758 * 109.87343 * 14 12 11 16 16 C 1.53000 * 60.54619 * 113.29041 * 15 14 12 17 17 H 1.08993 * 119.52906 * 248.26189 * 16 15 14 18 18 C 1.54382 * 118.12253 * 91.66971 * 16 15 14 19 19 N 1.48565 * 104.59336 * 272.76542 * 18 16 15 20 20 C 1.46907 * 110.99490 * 159.04075 * 19 18 16 21 21 C 1.50697 * 109.46873 * 54.58764 * 20 19 18 22 22 C 1.34331 * 126.44432 * 89.71000 * 21 20 19 23 23 N 1.34474 * 107.67029 * 180.25867 * 22 21 20 24 24 C 1.30258 * 108.70072 * 0.02562 * 23 22 21 25 25 O 1.33964 * 108.76191 * 0.02562 * 24 23 22 26 26 C 1.48565 * 104.21965 * 39.49236 * 19 18 16 27 27 C 1.47065 * 87.88641 * 333.10085 * 11 10 9 28 28 H 0.97002 * 119.99468 * 0.02562 * 1 2 3 29 29 H 1.09000 * 113.28701 * 46.93530 * 9 7 2 30 30 H 1.08996 * 113.46393 * 25.06777 * 10 9 7 31 31 H 1.09002 * 113.51842 * 254.63996 * 10 9 7 32 32 H 1.08994 * 117.44476 * 220.93952 * 15 14 12 33 33 H 1.09001 * 117.44094 * 5.69171 * 15 14 12 34 34 H 1.09004 * 110.40979 * 153.99525 * 18 16 15 35 35 H 1.08989 * 110.41247 * 31.54903 * 18 16 15 36 36 H 1.08995 * 109.47141 * 294.58541 * 20 19 18 37 37 H 1.09002 * 109.46801 * 174.58567 * 20 19 18 38 38 H 1.07996 * 126.16271 * 0.24298 * 22 21 20 39 39 H 1.08000 * 125.61886 * 179.97438 * 24 23 22 40 40 H 1.08995 * 110.41482 * 79.29208 * 26 19 18 41 41 H 1.09000 * 110.40650 * 201.61597 * 26 19 18 42 42 H 1.09001 * 113.46962 * 141.67818 * 27 11 10 43 43 H 1.08992 * 113.46806 * 272.11949 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.1487 -3.7443 0.0005 11 7 1.2071 -4.3593 0.9482 12 6 0.8309 -5.6139 1.2661 13 8 1.3259 -6.5597 0.6907 14 6 -0.2050 -5.8414 2.3367 15 6 -1.5942 -6.3499 1.9459 16 6 -0.6702 -7.2460 2.7729 17 1 -0.2591 -8.1514 2.3264 18 6 -0.7731 -7.1746 4.3116 19 7 0.1433 -6.0707 4.6972 20 6 -0.1953 -5.5456 6.0268 21 6 -0.2088 -6.6751 7.0244 22 6 0.8340 -7.1111 7.7503 23 7 0.4035 -8.1340 8.5097 24 6 -0.8611 -8.3307 8.2673 25 8 -1.2674 -7.4424 7.3506 26 6 -0.0661 -5.0394 3.6485 27 6 0.8522 -3.0028 1.3918 28 1 -0.4849 0.8401 -0.0004 29 1 0.4437 -2.5306 -0.7312 30 1 3.1371 -3.5667 0.4242 31 1 2.1883 -4.2519 -0.9632 32 1 -2.4519 -5.9083 2.4533 33 1 -1.7546 -6.6215 0.9026 34 1 -0.4461 -8.1135 4.7585 35 1 -1.7945 -6.9440 4.6140 36 1 -1.1796 -5.0788 5.9932 37 1 0.5477 -4.8060 6.3254 38 1 1.8374 -6.7122 7.7278 39 1 -1.4798 -9.0862 8.7287 40 1 -0.9769 -4.4746 3.8472 41 1 0.7922 -4.3694 3.5975 42 1 -0.2091 -2.8807 1.6083 43 1 1.4918 -2.6258 2.1897 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277553819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:16 Heat of formation + Delta-G solvation = 54.793878 kcal Electronic energy + Delta-G solvation = -26300.647711 eV Core-core repulsion = 22542.563688 eV Total energy + Delta-G solvation = -3758.084023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.28279 -41.84540 -40.37496 -38.58704 -35.94708 -35.67914 -34.63832 -31.74818 -31.36716 -29.54308 -27.77733 -27.15183 -26.66415 -24.43857 -23.64899 -23.58784 -22.27727 -21.74538 -21.24820 -19.56761 -18.71567 -18.44130 -18.00530 -17.62383 -17.24013 -16.70022 -16.45379 -16.11729 -15.88103 -15.69367 -15.15083 -15.07278 -14.85321 -14.58481 -14.14002 -14.07223 -14.00260 -13.32201 -13.27172 -13.09256 -12.97083 -12.91461 -12.74207 -12.56321 -12.41204 -12.32536 -12.17791 -11.70880 -11.53279 -11.34853 -11.14679 -11.04848 -10.69236 -10.50286 -9.93457 -9.57668 -9.54961 -8.15303 -6.25854 0.47269 1.45726 1.47179 1.51455 1.61319 1.72835 1.80895 1.92822 2.47538 2.49268 2.86514 3.14978 3.24021 3.39341 3.47784 3.51906 3.75525 3.87177 4.02855 4.07485 4.23153 4.26425 4.31355 4.41241 4.42684 4.48594 4.49746 4.62381 4.64955 4.70209 4.75368 4.83959 4.86956 4.90163 4.96974 5.00559 5.08101 5.10875 5.41629 5.52452 5.61293 5.76433 5.83153 6.24837 6.74249 6.82599 6.88806 7.14686 7.44109 8.94717 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017050 B = 0.002994 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.787276 B = 9348.303732 C =10254.012361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.024 3.976 10 C 0.103 3.897 11 N -0.638 5.638 12 C 0.574 3.426 13 O -0.601 6.601 14 C -0.186 4.186 15 C -0.101 4.101 16 C -0.121 4.121 17 H 0.114 0.886 18 C 0.074 3.926 19 N -0.519 5.519 20 C 0.130 3.870 21 C -0.047 4.047 22 C -0.036 4.036 23 N -0.527 5.527 24 C 0.183 3.817 25 O -0.211 6.211 26 C 0.083 3.917 27 C 0.121 3.879 28 H 0.265 0.735 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.189 0.811 39 H 0.291 0.709 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.739 -11.252 15.282 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.564 4.564 8 H 0.083 0.917 9 C 0.005 3.995 10 C -0.019 4.019 11 N -0.370 5.370 12 C 0.365 3.635 13 O -0.484 6.484 14 C -0.190 4.190 15 C -0.139 4.139 16 C -0.140 4.140 17 H 0.132 0.868 18 C -0.053 4.053 19 N -0.244 5.244 20 C 0.003 3.997 21 C -0.101 4.101 22 C -0.174 4.174 23 N -0.256 5.256 24 C -0.043 4.043 25 O -0.097 6.097 26 C -0.044 4.044 27 C -0.001 4.001 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.144 0.856 38 H 0.206 0.794 39 H 0.306 0.694 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.805 -12.329 15.511 20.647 hybrid contribution -0.470 1.380 -0.808 1.667 sum -6.275 -10.949 14.704 19.377 Atomic orbital electron populations 1.70056 1.07281 1.27749 1.50299 1.25711 0.95560 1.02347 0.94055 0.85533 0.79204 0.79553 0.77520 1.19010 1.21102 1.20428 1.21201 0.93259 0.90423 1.51540 0.91699 1.20169 0.94445 0.91519 0.93377 1.23271 0.94632 0.92195 0.91830 1.49862 1.41832 1.05022 1.40258 1.19264 0.81830 0.80299 0.82124 1.90605 1.59171 1.42107 1.56475 1.22271 0.98339 1.01555 0.96829 1.23255 0.90678 0.98621 1.01305 1.23572 1.02750 0.92869 0.94844 0.86815 1.22576 0.95743 0.95709 0.91233 1.65755 1.49948 1.07534 1.01141 1.20752 1.03362 0.90828 0.84732 1.23214 0.85849 0.98396 1.02592 1.23294 1.01270 0.95924 0.96903 1.70482 1.11970 1.17563 1.25555 1.29083 0.91800 0.93991 0.89410 1.84448 1.38471 1.38234 1.48573 1.22489 1.02376 0.92832 0.86668 1.23250 0.99933 0.76442 1.00482 0.92638 0.94330 0.89896 0.92808 0.85346 0.87836 0.90010 0.91161 0.90903 0.85627 0.79384 0.69362 0.90512 0.89934 0.91882 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.56 13.26 21.45 0.28 -48.27 16 2 C 0.02 1.20 5.46 84.66 0.46 1.66 16 3 Si 0.96 39.88 29.54 68.60 2.03 41.91 16 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.53 -26.07 8.84 25.60 0.23 -25.84 16 8 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 9 C 0.02 1.12 3.76 -11.29 -0.04 1.07 16 10 C 0.10 4.30 8.19 83.18 0.68 4.99 16 11 N -0.64 -25.64 3.62 -858.81 -3.10 -28.75 16 12 C 0.57 22.74 7.68 87.66 0.67 23.41 16 13 O -0.60 -27.92 17.66 -3.02 -0.05 -27.98 16 14 C -0.19 -5.53 2.70 -52.03 -0.14 -5.67 16 15 C -0.10 -2.38 9.86 30.60 0.30 -2.08 16 16 C -0.12 -3.03 6.85 -9.90 -0.07 -3.10 16 17 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 18 C 0.07 1.55 5.23 86.45 0.45 2.00 16 19 N -0.52 -11.59 5.48 -886.01 -4.86 -16.45 16 20 C 0.13 2.23 5.61 85.55 0.48 2.71 16 21 C -0.05 -0.88 5.74 24.79 0.14 -0.74 16 22 C -0.04 -0.72 11.80 83.40 0.98 0.26 16 23 N -0.53 -10.87 11.29 -316.07 -3.57 -14.44 16 24 C 0.18 2.56 13.23 130.48 1.73 4.29 16 25 O -0.21 -3.57 10.60 -3.73 -0.04 -3.61 16 26 C 0.08 2.07 5.50 86.45 0.48 2.55 16 27 C 0.12 4.83 6.40 83.09 0.53 5.37 16 28 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 29 H 0.04 1.99 8.11 -2.39 -0.02 1.97 16 30 H 0.08 3.30 8.10 -2.39 -0.02 3.28 16 31 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.08 1.76 7.92 -2.39 -0.02 1.74 16 35 H 0.07 1.23 7.99 -2.39 -0.02 1.21 16 36 H 0.07 1.06 7.88 -2.39 -0.02 1.04 16 37 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.19 3.35 8.06 -2.91 -0.02 3.32 16 39 H 0.29 0.80 8.06 -2.91 -0.02 0.78 16 40 H 0.08 1.60 7.82 -2.39 -0.02 1.59 16 41 H 0.08 2.30 6.84 -2.39 -0.02 2.28 16 42 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.08 3.13 8.06 -2.39 -0.02 3.11 16 Total: -1.00 -66.80 363.42 -1.41 -68.22 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 1.01 Total: 18.50 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 6.89 Total: 10.87 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -11.25 Total: -107.91 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.09 Total: -31.58 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -66.80 -1.41 -68.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277553819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.009 kcal (2) G-P(sol) polarization free energy of solvation -66.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds