Wall clock time and date at job start Tue Mar 31 2020 11:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99795 * 2 1 4 4 H 1.48501 * 109.46863 * 270.00202 * 3 2 1 5 5 H 1.48496 * 109.47186 * 30.00296 * 3 2 1 6 6 H 1.48506 * 109.46767 * 150.00416 * 3 2 1 7 7 C 1.37878 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00113 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99722 * 180.02562 * 7 2 1 10 10 C 1.53947 * 113.73968 * 179.97438 * 9 7 2 11 11 N 1.47584 * 86.11565 * 222.04272 * 10 9 7 12 12 C 1.34769 * 134.49063 * 204.63541 * 11 10 9 13 13 O 1.21281 * 120.00474 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.54891 * 129.08893 * 299.93972 * 14 12 11 16 16 C 1.57167 * 77.91549 * 180.16406 * 15 14 12 17 17 N 1.46907 * 129.24819 * 179.19754 * 16 15 14 18 18 C 1.46897 * 110.99968 * 61.28614 * 17 16 15 19 19 C 1.50704 * 109.46973 * 179.97438 * 18 17 16 20 20 C 1.34326 * 126.44181 * 90.00056 * 19 18 17 21 21 N 1.34481 * 107.66451 * 180.02562 * 20 19 18 22 22 C 1.30257 * 108.70399 * 359.97438 * 21 20 19 23 23 O 1.33970 * 108.75856 * 359.73343 * 22 21 20 24 24 C 1.54412 * 83.73370 * 42.47561 * 16 15 14 25 25 C 1.54885 * 129.09037 * 60.06677 * 14 12 11 26 26 C 1.47577 * 91.01296 * 24.63911 * 11 10 9 27 27 H 0.97000 * 120.00154 * 359.97438 * 1 2 3 28 28 H 1.08997 * 113.01667 * 311.65275 * 9 7 2 29 29 H 1.09001 * 113.76955 * 336.34307 * 10 9 7 30 30 H 1.08997 * 113.77064 * 107.74383 * 10 9 7 31 31 H 1.09001 * 114.98080 * 291.95801 * 15 14 12 32 32 H 1.09003 * 114.97457 * 67.13363 * 15 14 12 33 33 H 1.00891 * 110.99862 * 297.32983 * 17 16 15 34 34 H 1.08997 * 109.46976 * 300.00026 * 18 17 16 35 35 H 1.09002 * 109.47183 * 60.00026 * 18 17 16 36 36 H 1.07998 * 126.16859 * 0.02562 * 20 19 18 37 37 H 1.07999 * 125.61719 * 180.02562 * 22 21 20 38 38 H 1.08992 * 114.93459 * 205.06231 * 24 16 15 39 39 H 1.08998 * 114.98218 * 70.02770 * 24 16 15 40 40 H 1.09008 * 114.97367 * 292.86602 * 25 14 12 41 41 H 1.08998 * 114.98354 * 68.03524 * 25 14 12 42 42 H 1.08995 * 113.76947 * 221.05456 * 26 11 10 43 43 H 1.09005 * 113.76708 * 89.66367 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.1314 -2.6031 0.0000 11 7 5.0917 -2.0716 0.9865 12 6 6.3433 -2.4037 1.3600 13 8 6.9069 -3.3374 0.8295 14 6 7.0426 -1.6148 2.4369 15 6 7.3995 -0.1079 2.4680 16 6 7.9587 -0.6070 3.8494 17 7 8.6582 0.1491 4.8969 18 6 7.8081 1.2231 5.4276 19 6 8.5574 1.9745 6.4977 20 6 9.3428 3.0492 6.3168 21 7 9.8206 3.4125 7.5202 22 6 9.3513 2.5959 8.4200 23 8 8.5607 1.6983 7.8166 24 6 8.4589 -1.8099 3.0205 25 6 6.6269 -1.3952 3.9127 26 6 4.1309 -1.0304 1.3998 27 1 -0.4850 0.8400 0.0004 28 1 3.9380 -0.5267 -0.7489 29 1 3.4717 -3.3733 0.3998 30 1 4.5869 -2.8827 -0.9500 31 1 8.1622 0.1994 1.7525 32 1 6.5446 0.5666 2.5181 33 1 9.5333 0.5163 4.5545 34 1 7.5414 1.9070 4.6219 35 1 6.9019 0.7924 5.8535 36 1 9.5526 3.5340 5.3749 37 1 9.5608 2.6386 9.4786 38 1 8.5999 -2.7309 3.5861 39 1 9.2741 -1.5874 2.3320 40 1 5.7238 -0.8011 4.0530 41 1 6.6711 -2.2850 4.5407 42 1 4.5860 -0.0544 1.5676 43 1 3.4711 -1.3386 2.2110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277553842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:22 Heat of formation + Delta-G solvation = 132.276915 kcal Electronic energy + Delta-G solvation = -25857.363258 eV Core-core repulsion = 22102.639152 eV Total energy + Delta-G solvation = -3754.724106 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.67142 -42.14437 -39.22176 -37.04355 -35.60073 -35.05233 -32.69248 -30.70634 -29.76017 -26.67099 -26.00577 -25.79076 -25.70302 -25.22746 -23.35616 -23.05104 -21.69018 -20.09156 -18.89085 -18.07251 -18.00859 -17.26509 -17.02172 -16.78036 -16.04408 -15.69344 -15.03199 -14.91486 -14.70598 -14.45062 -14.35624 -14.07201 -13.95043 -13.78513 -13.38249 -12.92724 -12.66449 -12.15141 -11.99649 -11.77791 -11.72082 -11.66326 -11.39383 -11.34801 -10.90843 -10.89426 -10.82844 -10.55346 -10.38929 -10.19851 -9.97957 -9.49300 -9.36877 -9.19257 -8.87631 -8.72776 -8.11646 -6.26578 -4.29385 1.03375 2.29585 2.36956 2.76918 3.13823 3.15651 3.22629 3.25220 3.53411 3.86456 3.96791 4.03704 4.22062 4.24091 4.37363 4.47884 4.53590 4.60913 4.77733 4.82505 4.98495 5.02357 5.36763 5.39758 5.43092 5.53507 5.60396 5.69046 5.71833 5.75179 5.79907 5.85656 5.90966 5.92373 6.06861 6.13997 6.27055 6.32060 6.46960 6.51495 6.77799 7.07615 7.31049 7.48025 8.20456 8.32227 8.55842 8.77486 9.34021 10.85564 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013181 B = 0.003179 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.737962 B = 8804.333266 C =10409.941371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.515 4.515 8 H 0.080 0.920 9 C -0.006 4.006 10 C 0.118 3.882 11 N -0.633 5.633 12 C 0.588 3.412 13 O -0.553 6.553 14 C -0.144 4.144 15 C -0.137 4.137 16 C 0.044 3.956 17 N -0.621 5.621 18 C 0.141 3.859 19 C -0.036 4.036 20 C -0.035 4.035 21 N -0.490 5.490 22 C 0.172 3.828 23 O -0.195 6.195 24 C -0.075 4.075 25 C -0.087 4.087 26 C 0.089 3.911 27 H 0.267 0.733 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.354 0.646 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.183 0.817 37 H 0.250 0.750 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.893 5.002 13.307 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.553 4.553 8 H 0.098 0.902 9 C -0.026 4.026 10 C -0.003 4.003 11 N -0.366 5.366 12 C 0.376 3.624 13 O -0.433 6.433 14 C -0.148 4.148 15 C -0.178 4.178 16 C -0.049 4.049 17 N -0.250 5.250 18 C 0.013 3.987 19 C -0.089 4.089 20 C -0.175 4.175 21 N -0.219 5.219 22 C -0.055 4.055 23 O -0.080 6.080 24 C -0.114 4.114 25 C -0.126 4.126 26 C -0.034 4.034 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.174 0.826 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.200 0.800 37 H 0.265 0.735 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 17.432 4.615 13.779 22.694 hybrid contribution -0.012 1.174 -0.665 1.349 sum 17.420 5.788 13.114 22.560 Atomic orbital electron populations 1.69891 1.06363 1.27325 1.49214 1.25013 0.94666 0.99131 0.93897 0.86927 0.80446 0.83662 0.78853 1.20134 1.21244 1.18496 1.20825 0.87568 0.94910 1.52018 0.90198 1.20918 0.97073 0.92558 0.92032 1.23322 0.87032 0.99256 0.90678 1.50264 1.11794 1.34553 1.39983 1.18097 0.80657 0.82556 0.81140 1.90663 1.66175 1.30198 1.56230 1.23350 0.98281 0.97461 0.95684 1.25194 1.00805 0.94175 0.97619 1.24323 0.96043 0.95318 0.89192 1.59832 1.05953 1.25908 1.33301 1.20239 0.95091 0.91796 0.91585 1.23240 1.03916 0.99249 0.82544 1.23127 0.99510 0.97324 0.97506 1.70470 1.24497 1.27072 0.99830 1.28131 0.90922 0.85714 1.00691 1.84472 1.54862 1.48978 1.19699 1.23769 0.94731 0.96859 0.96006 1.24109 0.95865 0.99566 0.93032 1.24111 0.87708 0.89364 1.02197 0.92335 0.92482 0.89899 0.91482 0.90473 0.90160 0.82580 0.90710 0.88307 0.80023 0.73455 0.89948 0.90374 0.89957 0.90015 0.92017 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 13.96 55.43 0.77 -24.40 16 2 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 19.19 27.09 -169.99 -4.60 14.59 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.26 -5.20 5.47 56.52 0.31 -4.89 16 7 C -0.52 -12.93 9.33 -34.44 -0.32 -13.25 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 9 C -0.01 -0.13 2.88 -90.85 -0.26 -0.39 16 10 C 0.12 2.28 8.39 -2.97 -0.02 2.26 16 11 N -0.63 -11.78 3.61 -178.43 -0.64 -12.42 16 12 C 0.59 10.78 8.17 -10.99 -0.09 10.69 16 13 O -0.55 -11.86 17.82 5.56 0.10 -11.76 16 14 C -0.14 -2.02 3.11 -172.27 -0.54 -2.56 16 15 C -0.14 -1.58 7.95 -24.71 -0.20 -1.77 16 16 C 0.04 0.45 3.89 -146.94 -0.57 -0.13 16 17 N -0.62 -5.43 6.84 -117.64 -0.81 -6.23 16 18 C 0.14 1.13 6.23 -4.98 -0.03 1.10 16 19 C -0.04 -0.31 6.90 -35.69 -0.25 -0.56 16 20 C -0.04 -0.31 11.80 -17.77 -0.21 -0.52 16 21 N -0.49 -4.83 11.29 -14.97 -0.17 -5.00 16 22 C 0.17 1.29 13.23 52.09 0.69 1.98 16 23 O -0.19 -1.82 10.78 5.35 0.06 -1.76 16 24 C -0.08 -0.89 7.78 -26.71 -0.21 -1.10 16 25 C -0.09 -1.03 7.84 -25.99 -0.20 -1.23 16 26 C 0.09 1.64 7.37 -2.98 -0.02 1.61 16 27 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.06 1.20 7.09 -51.93 -0.37 0.83 16 29 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 0.84 7.91 -51.93 -0.41 0.43 16 32 H 0.08 0.93 7.45 -51.93 -0.39 0.54 16 33 H 0.35 2.64 8.81 -39.30 -0.35 2.30 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.25 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.08 0.97 7.94 -51.93 -0.41 0.56 16 39 H 0.08 0.87 7.91 -51.93 -0.41 0.46 16 40 H 0.08 0.94 7.97 -51.92 -0.41 0.53 16 41 H 0.08 0.95 7.93 -51.93 -0.41 0.54 16 42 H 0.06 1.07 6.47 -51.93 -0.34 0.73 16 43 H 0.09 1.58 8.09 -51.93 -0.42 1.16 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -31.75 363.98 -8.24 -39.99 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.10 Total: 3.48 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.33 Total: -1.97 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.84 Total: -48.06 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.16 Total: -13.52 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.60 Total: 14.59 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.75 -8.24 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277553842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.267 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds