Wall clock time and date at job start Tue Mar 31 2020 11:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99795 * 2 1 4 4 H 1.48501 * 109.46863 * 270.00202 * 3 2 1 5 5 H 1.48496 * 109.47186 * 30.00296 * 3 2 1 6 6 H 1.48506 * 109.46767 * 150.00416 * 3 2 1 7 7 C 1.37878 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00113 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99722 * 180.02562 * 7 2 1 10 10 C 1.53947 * 113.73968 * 179.97438 * 9 7 2 11 11 N 1.47584 * 86.11565 * 222.04272 * 10 9 7 12 12 C 1.34769 * 134.49063 * 204.63541 * 11 10 9 13 13 O 1.21281 * 120.00474 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.54891 * 129.08893 * 299.93972 * 14 12 11 16 16 C 1.57167 * 77.91549 * 180.16406 * 15 14 12 17 17 N 1.46907 * 129.24819 * 179.19754 * 16 15 14 18 18 C 1.46897 * 110.99968 * 61.28614 * 17 16 15 19 19 C 1.50704 * 109.46973 * 179.97438 * 18 17 16 20 20 C 1.34326 * 126.44181 * 90.00056 * 19 18 17 21 21 N 1.34481 * 107.66451 * 180.02562 * 20 19 18 22 22 C 1.30257 * 108.70399 * 359.97438 * 21 20 19 23 23 O 1.33970 * 108.75856 * 359.73343 * 22 21 20 24 24 C 1.54412 * 83.73370 * 42.47561 * 16 15 14 25 25 C 1.54885 * 129.09037 * 60.06677 * 14 12 11 26 26 C 1.47577 * 91.01296 * 24.63911 * 11 10 9 27 27 H 0.97000 * 120.00154 * 359.97438 * 1 2 3 28 28 H 1.08997 * 113.01667 * 311.65275 * 9 7 2 29 29 H 1.09001 * 113.76955 * 336.34307 * 10 9 7 30 30 H 1.08997 * 113.77064 * 107.74383 * 10 9 7 31 31 H 1.09001 * 114.98080 * 291.95801 * 15 14 12 32 32 H 1.09003 * 114.97457 * 67.13363 * 15 14 12 33 33 H 1.00891 * 110.99862 * 297.32983 * 17 16 15 34 34 H 1.08997 * 109.46976 * 300.00026 * 18 17 16 35 35 H 1.09002 * 109.47183 * 60.00026 * 18 17 16 36 36 H 1.07998 * 126.16859 * 0.02562 * 20 19 18 37 37 H 1.07999 * 125.61719 * 180.02562 * 22 21 20 38 38 H 1.08992 * 114.93459 * 205.06231 * 24 16 15 39 39 H 1.08998 * 114.98218 * 70.02770 * 24 16 15 40 40 H 1.09008 * 114.97367 * 292.86602 * 25 14 12 41 41 H 1.08998 * 114.98354 * 68.03524 * 25 14 12 42 42 H 1.08995 * 113.76947 * 221.05456 * 26 11 10 43 43 H 1.09005 * 113.76708 * 89.66367 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.1314 -2.6031 0.0000 11 7 5.0917 -2.0716 0.9865 12 6 6.3433 -2.4037 1.3600 13 8 6.9069 -3.3374 0.8295 14 6 7.0426 -1.6148 2.4369 15 6 7.3995 -0.1079 2.4680 16 6 7.9587 -0.6070 3.8494 17 7 8.6582 0.1491 4.8969 18 6 7.8081 1.2231 5.4276 19 6 8.5574 1.9745 6.4977 20 6 9.3428 3.0492 6.3168 21 7 9.8206 3.4125 7.5202 22 6 9.3513 2.5959 8.4200 23 8 8.5607 1.6983 7.8166 24 6 8.4589 -1.8099 3.0205 25 6 6.6269 -1.3952 3.9127 26 6 4.1309 -1.0304 1.3998 27 1 -0.4850 0.8400 0.0004 28 1 3.9380 -0.5267 -0.7489 29 1 3.4717 -3.3733 0.3998 30 1 4.5869 -2.8827 -0.9500 31 1 8.1622 0.1994 1.7525 32 1 6.5446 0.5666 2.5181 33 1 9.5333 0.5163 4.5545 34 1 7.5414 1.9070 4.6219 35 1 6.9019 0.7924 5.8535 36 1 9.5526 3.5340 5.3749 37 1 9.5608 2.6386 9.4786 38 1 8.5999 -2.7309 3.5861 39 1 9.2741 -1.5874 2.3320 40 1 5.7238 -0.8011 4.0530 41 1 6.6711 -2.2850 4.5407 42 1 4.5860 -0.0544 1.5676 43 1 3.4711 -1.3386 2.2110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277553842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:21 Heat of formation + Delta-G solvation = 107.987833 kcal Electronic energy + Delta-G solvation = -25858.416511 eV Core-core repulsion = 22102.639152 eV Total energy + Delta-G solvation = -3755.777360 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.26307 -43.09511 -40.72100 -38.58702 -36.27754 -35.67164 -34.64483 -31.57628 -31.17178 -27.95679 -27.03733 -26.92923 -26.74663 -26.41728 -24.62250 -23.64372 -22.29912 -21.58937 -20.06293 -19.29096 -19.07920 -18.60190 -18.04068 -17.55459 -17.26633 -16.67181 -16.55317 -15.89275 -15.57785 -15.47662 -15.27654 -15.15869 -14.93493 -14.87434 -14.60384 -14.49543 -13.80196 -13.54391 -13.36570 -13.12039 -12.66481 -12.60542 -12.55587 -12.36157 -12.30418 -12.21135 -11.83869 -11.67073 -11.53143 -11.45447 -11.34600 -11.23337 -10.85638 -10.65017 -9.96086 -9.65684 -9.56418 -8.26274 -6.34365 0.45404 1.40350 1.42925 1.44640 1.54779 1.70544 1.81192 1.87012 2.39851 2.73297 3.06116 3.10531 3.17281 3.24790 3.43745 3.45384 3.51818 3.64558 3.86513 4.04239 4.06469 4.22338 4.31498 4.40086 4.46800 4.52630 4.54961 4.58904 4.64071 4.77656 4.79359 4.84556 4.85980 4.86929 4.91731 4.97160 5.02822 5.03338 5.37613 5.39768 5.60936 5.75468 6.16827 6.28585 6.70378 6.73619 6.80512 7.10132 7.33102 8.89352 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013181 B = 0.003179 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.737962 B = 8804.333266 C =10409.941371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.018 3.982 3 Si 0.939 3.061 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.223 1.223 7 C -0.515 4.515 8 H 0.039 0.961 9 C -0.012 4.012 10 C 0.116 3.884 11 N -0.633 5.633 12 C 0.585 3.415 13 O -0.591 6.591 14 C -0.175 4.175 15 C -0.127 4.127 16 C 0.076 3.924 17 N -0.622 5.622 18 C 0.145 3.855 19 C -0.047 4.047 20 C -0.041 4.041 21 N -0.527 5.527 22 C 0.182 3.818 23 O -0.211 6.211 24 C -0.075 4.075 25 C -0.085 4.085 26 C 0.104 3.896 27 H 0.267 0.733 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.364 0.636 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.199 0.801 37 H 0.289 0.711 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.343 7.067 14.813 25.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.180 4.180 3 Si 0.762 3.238 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.145 1.145 7 C -0.553 4.553 8 H 0.057 0.943 9 C -0.031 4.031 10 C -0.006 4.006 11 N -0.365 5.365 12 C 0.375 3.625 13 O -0.473 6.473 14 C -0.179 4.179 15 C -0.168 4.168 16 C -0.017 4.017 17 N -0.252 5.252 18 C 0.017 3.983 19 C -0.101 4.101 20 C -0.180 4.180 21 N -0.256 5.256 22 C -0.044 4.044 23 O -0.097 6.097 24 C -0.114 4.114 25 C -0.124 4.124 26 C -0.018 4.018 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.186 0.814 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.216 0.784 37 H 0.304 0.696 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 19.914 6.677 15.296 25.983 hybrid contribution -0.790 0.402 -1.121 1.429 sum 19.125 7.078 14.175 24.835 Atomic orbital electron populations 1.70050 1.08530 1.28347 1.51517 1.25904 0.95328 1.03239 0.93532 0.85891 0.80535 0.78292 0.79079 1.20192 1.21558 1.14498 1.20985 0.89877 0.93380 1.51097 0.94293 1.20864 0.94299 0.93891 0.94087 1.23228 0.87454 0.98456 0.91475 1.50223 1.12037 1.34496 1.39790 1.18754 0.80081 0.82291 0.81356 1.90635 1.66839 1.32032 1.57820 1.23296 0.99651 0.99271 0.95687 1.25203 1.01228 0.91919 0.98445 1.23890 0.94676 0.94382 0.88743 1.59804 1.06374 1.26582 1.32436 1.20262 0.94548 0.91707 0.91820 1.23349 1.04504 0.99621 0.82608 1.23453 0.99183 0.97338 0.97982 1.70489 1.25934 1.28422 1.00723 1.29083 0.89119 0.84256 1.01944 1.84477 1.55420 1.49641 1.20132 1.23806 0.93663 0.97649 0.96249 1.24141 0.97131 1.00006 0.91073 1.23888 0.87356 0.90443 1.00122 0.92387 0.91759 0.90396 0.91000 0.89621 0.89531 0.81441 0.89036 0.88680 0.78425 0.69620 0.90335 0.89705 0.89248 0.90203 0.89615 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.83 13.96 21.45 0.30 -54.53 16 2 C 0.02 0.96 5.47 84.65 0.46 1.42 16 3 Si 0.94 38.39 27.09 68.60 1.86 40.24 16 4 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.22 -7.62 5.47 99.48 0.54 -7.08 16 7 C -0.52 -26.27 9.33 25.60 0.24 -26.03 16 8 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 9 C -0.01 -0.49 2.88 -10.88 -0.03 -0.52 16 10 C 0.12 4.45 8.39 86.48 0.73 5.18 16 11 N -0.63 -22.69 3.61 -836.83 -3.02 -25.71 16 12 C 0.58 20.75 8.17 87.66 0.72 21.46 16 13 O -0.59 -25.19 17.82 -3.03 -0.05 -25.25 16 14 C -0.18 -4.53 3.11 -63.68 -0.20 -4.73 16 15 C -0.13 -2.45 7.95 31.90 0.25 -2.20 16 16 C 0.08 1.30 3.89 -6.41 -0.02 1.28 16 17 N -0.62 -8.81 6.84 -526.10 -3.60 -12.41 16 18 C 0.14 1.85 6.23 85.56 0.53 2.39 16 19 C -0.05 -0.72 6.90 24.79 0.17 -0.55 16 20 C -0.04 -0.63 11.80 83.39 0.98 0.36 16 21 N -0.53 -9.30 11.29 -316.06 -3.57 -12.87 16 22 C 0.18 2.29 13.23 130.48 1.73 4.02 16 23 O -0.21 -3.46 10.78 -3.77 -0.04 -3.50 16 24 C -0.08 -1.60 7.78 30.61 0.24 -1.36 16 25 C -0.09 -1.78 7.84 31.07 0.24 -1.53 16 26 C 0.10 3.59 7.37 86.48 0.64 4.23 16 27 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.06 2.56 7.09 -2.39 -0.02 2.54 16 29 H 0.08 3.04 8.09 -2.39 -0.02 3.02 16 30 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.09 1.53 7.91 -2.39 -0.02 1.51 16 32 H 0.09 1.59 7.45 -2.39 -0.02 1.57 16 33 H 0.36 4.16 8.81 -89.70 -0.79 3.37 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.20 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.29 0.55 8.06 -2.91 -0.02 0.53 16 38 H 0.08 1.72 7.94 -2.39 -0.02 1.70 16 39 H 0.08 1.68 7.91 -2.39 -0.02 1.66 16 40 H 0.09 1.75 7.97 -2.38 -0.02 1.73 16 41 H 0.08 1.69 7.93 -2.39 -0.02 1.67 16 42 H 0.09 2.58 6.47 -2.39 -0.02 2.56 16 43 H 0.09 2.99 8.09 -2.38 -0.02 2.97 16 Total: -1.00 -70.49 363.98 -1.36 -71.86 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.09 Total: 18.76 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 6.68 Total: 3.40 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -9.89 Total: -105.53 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.09 Total: -28.74 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 1.86 Total: 40.24 kcal Total: -70.49 -1.36 -71.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277553842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.847 kcal (2) G-P(sol) polarization free energy of solvation -70.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds