Wall clock time and date at job start Tue Mar 31 2020 11:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53946 * 113.73954 * 276.67805 * 9 7 2 11 11 N 1.47588 * 86.11556 * 222.04720 * 10 9 7 12 12 C 1.34772 * 134.49111 * 204.64340 * 11 10 9 13 13 O 1.21283 * 119.99962 * 179.97438 * 12 11 10 14 14 C 1.50702 * 120.00146 * 359.97438 * 12 11 10 15 15 H 1.08992 * 115.56334 * 34.42004 * 14 12 11 16 16 C 1.53154 * 117.51322 * 248.66665 * 14 12 11 17 17 C 1.52337 * 117.51532 * 180.16927 * 14 12 11 18 18 C 1.53288 * 128.80336 * 349.56117 * 17 14 12 19 19 N 1.48102 * 85.92431 * 196.85347 * 18 17 14 20 20 C 1.46902 * 111.00068 * 137.12375 * 19 18 17 21 21 C 1.50698 * 109.46925 * 90.41215 * 20 19 18 22 22 C 1.34336 * 126.43662 * 89.71800 * 21 20 19 23 23 N 1.34478 * 107.66268 * 179.87338 * 22 21 20 24 24 C 1.30257 * 108.70507 * 0.39343 * 23 22 21 25 25 O 1.33964 * 108.75896 * 359.75511 * 24 23 22 26 26 C 1.48100 * 90.95453 * 24.15178 * 19 18 17 27 27 C 1.47581 * 91.01168 * 24.63881 * 11 10 9 28 28 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 29 29 H 1.08998 * 112.94428 * 48.40707 * 9 7 2 30 30 H 1.09000 * 113.77324 * 336.34526 * 10 9 7 31 31 H 1.09003 * 113.77117 * 107.74604 * 10 9 7 32 32 H 1.08995 * 117.51785 * 359.97438 * 16 14 12 33 33 H 1.08999 * 117.51273 * 145.12830 * 16 14 12 34 34 H 1.08997 * 113.80160 * 311.10838 * 18 17 14 35 35 H 1.09005 * 113.79952 * 82.60863 * 18 17 14 36 36 H 1.08998 * 109.47288 * 210.41856 * 20 19 18 37 37 H 1.09003 * 109.47125 * 330.41738 * 20 19 18 38 38 H 1.07993 * 126.17274 * 359.97438 * 22 21 20 39 39 H 1.07993 * 125.61874 * 179.77710 * 24 23 22 40 40 H 1.09003 * 113.79900 * 221.59522 * 26 19 18 41 41 H 1.08996 * 113.91193 * 90.11553 * 26 19 18 42 42 H 1.09005 * 113.76454 * 221.05826 * 27 11 10 43 43 H 1.09002 * 113.87038 * 89.67824 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 0.7999 -2.9543 1.3992 11 7 1.2212 -4.3068 0.9853 12 6 0.8830 -5.5569 1.3583 13 8 1.4098 -6.5116 0.8273 14 6 -0.1498 -5.7686 2.4351 15 1 -0.9584 -5.0382 2.4613 16 6 0.3293 -6.3420 3.7720 17 6 -0.4862 -7.2049 2.8151 18 6 -0.0815 -8.5048 2.1107 19 7 -1.1644 -9.1425 2.8944 20 6 -1.9405 -10.0708 2.0614 21 6 -1.3315 -11.4468 2.1416 22 6 -1.6373 -12.4040 3.0331 23 7 -0.8731 -13.4761 2.7591 24 6 -0.1117 -13.1968 1.7399 25 8 -0.3736 -11.9465 1.3362 26 6 -1.8624 -7.8437 3.0333 27 6 2.1616 -3.7404 -0.0011 28 1 -0.4850 -0.8401 0.0004 29 1 0.4613 -2.5338 -0.7509 30 1 1.3966 -2.5373 2.2104 31 1 -0.2731 -2.8605 1.5670 32 1 1.3911 -6.5665 3.8721 33 1 -0.1650 -5.9894 4.6772 34 1 -0.2621 -8.4973 1.0359 35 1 0.9166 -8.8553 2.3737 36 1 -2.9693 -10.1072 2.4198 37 1 -1.9282 -9.7277 1.0268 38 1 -2.3667 -12.3272 3.8259 39 1 0.6114 -13.8633 1.2936 40 1 -2.2753 -7.6703 4.0270 41 1 -2.5747 -7.6373 2.2345 42 1 2.1759 -4.2744 -0.9513 43 1 3.1591 -3.5539 0.3969 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277554116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:59 Heat of formation + Delta-G solvation = 69.824601 kcal Electronic energy + Delta-G solvation = -25542.436092 eV Core-core repulsion = 21785.003850 eV Total energy + Delta-G solvation = -3757.432242 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.28827 -41.78408 -40.68699 -38.78137 -36.25179 -35.70853 -34.85733 -32.70198 -30.84067 -28.50993 -27.31948 -27.12206 -26.84010 -24.58764 -24.36422 -23.64849 -22.33589 -21.98422 -20.15773 -19.39105 -19.03298 -18.58340 -18.15202 -17.73581 -17.02618 -16.67154 -16.64014 -16.50713 -15.74328 -15.62761 -15.53292 -15.38799 -14.84998 -14.48776 -14.30909 -13.96653 -13.82187 -13.55472 -13.46563 -13.29384 -13.08398 -12.80745 -12.61288 -12.47584 -12.38722 -11.88831 -11.80315 -11.65375 -11.52722 -11.45269 -11.27219 -11.04008 -10.56975 -10.45704 -10.00157 -9.79093 -9.63884 -8.61758 -6.35071 0.46087 1.42029 1.60957 1.67141 1.70219 1.81537 1.84246 1.85168 2.54543 2.60709 3.00569 3.08148 3.17047 3.40830 3.42730 3.61606 3.67748 3.81664 4.03693 4.06962 4.14154 4.18904 4.26115 4.28503 4.41032 4.43759 4.44836 4.51151 4.58593 4.67852 4.72170 4.74385 4.77332 4.84239 4.88161 4.89562 4.93017 5.03215 5.20171 5.38287 5.38677 5.83360 5.99994 6.19549 6.58658 6.70885 6.79996 7.09889 7.44199 8.78977 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.036231 B = 0.002196 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.631453 B =12749.838473 C =13088.835400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.021 4.021 3 Si 1.117 2.883 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.284 1.284 7 C -0.603 4.603 8 H 0.054 0.946 9 C 0.001 3.999 10 C 0.116 3.884 11 N -0.638 5.638 12 C 0.548 3.452 13 O -0.590 6.590 14 C -0.178 4.178 15 H 0.138 0.862 16 C -0.096 4.096 17 C -0.138 4.138 18 C 0.061 3.939 19 N -0.479 5.479 20 C 0.103 3.897 21 C -0.046 4.046 22 C -0.035 4.035 23 N -0.523 5.523 24 C 0.173 3.827 25 O -0.222 6.222 26 C 0.060 3.940 27 C 0.115 3.885 28 H 0.262 0.738 29 H 0.032 0.968 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.142 0.858 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.062 0.938 38 H 0.201 0.799 39 H 0.287 0.713 40 H 0.123 0.877 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 -18.263 7.885 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.221 4.221 3 Si 0.940 3.060 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.211 1.211 7 C -0.641 4.641 8 H 0.072 0.928 9 C -0.019 4.019 10 C -0.007 4.007 11 N -0.371 5.371 12 C 0.339 3.661 13 O -0.472 6.472 14 C -0.200 4.200 15 H 0.156 0.844 16 C -0.134 4.134 17 C -0.139 4.139 18 C -0.067 4.067 19 N -0.202 5.202 20 C -0.025 4.025 21 C -0.099 4.099 22 C -0.173 4.173 23 N -0.252 5.252 24 C -0.052 4.052 25 O -0.108 6.108 26 C -0.067 4.067 27 C -0.008 4.008 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.159 0.841 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.157 0.843 37 H 0.080 0.920 38 H 0.218 0.782 39 H 0.302 0.698 40 H 0.141 0.859 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.474 -18.283 8.513 20.897 hybrid contribution 0.280 -0.750 -1.553 1.748 sum -5.194 -19.033 6.959 20.920 Atomic orbital electron populations 1.70868 1.07728 1.30363 1.47634 1.27124 0.96547 1.06054 0.92343 0.82895 0.74294 0.71495 0.77316 1.19813 1.20464 1.21055 1.22143 0.94404 0.91801 1.55746 0.92802 1.20600 0.94877 0.93199 0.93195 1.23552 0.99619 0.77324 1.00186 1.50327 1.41890 1.05017 1.39831 1.20015 0.82680 0.80733 0.82646 1.90612 1.57743 1.40961 1.57893 1.22097 1.01091 0.99505 0.97274 0.84439 1.22891 1.00188 0.98162 0.92110 1.22704 0.99403 0.89006 1.02797 1.23280 0.96695 0.90837 0.95909 1.68598 1.07339 1.08144 1.36145 1.21183 0.98112 0.84969 0.98234 1.23516 0.93715 0.98609 0.94084 1.23357 1.03180 0.88879 1.01903 1.70464 1.09196 1.29738 1.15782 1.29012 1.00307 0.82657 0.93253 1.84464 1.46293 1.29442 1.50647 1.23641 0.92617 0.85695 1.04750 1.23217 0.94427 0.92006 0.91113 0.92828 0.95025 0.90062 0.91124 0.89259 0.84053 0.91807 0.91517 0.84313 0.91959 0.78249 0.69834 0.85892 0.88866 0.92163 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.56 13.65 21.45 0.29 -51.27 16 2 C -0.02 -1.08 5.46 84.65 0.46 -0.62 16 3 Si 1.12 46.30 29.90 68.60 2.05 48.36 16 4 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.60 -30.67 8.77 25.60 0.22 -30.44 16 8 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 9 C 0.00 0.03 3.09 -10.88 -0.03 -0.01 16 10 C 0.12 4.60 8.12 86.48 0.70 5.30 16 11 N -0.64 -25.03 3.61 -836.75 -3.02 -28.05 16 12 C 0.55 20.34 7.84 87.66 0.69 21.03 16 13 O -0.59 -25.21 15.86 -3.04 -0.05 -25.26 16 14 C -0.18 -4.82 5.94 -11.71 -0.07 -4.89 16 15 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 16 C -0.10 -2.11 10.24 30.47 0.31 -1.80 16 17 C -0.14 -3.16 3.04 -52.35 -0.16 -3.32 16 18 C 0.06 1.60 6.38 86.17 0.55 2.15 16 19 N -0.48 -9.51 6.14 -922.91 -5.67 -15.18 16 20 C 0.10 1.72 5.35 85.56 0.46 2.18 16 21 C -0.05 -0.94 6.94 24.79 0.17 -0.77 16 22 C -0.03 -0.69 11.80 83.40 0.98 0.29 16 23 N -0.52 -11.43 11.29 -316.07 -3.57 -15.00 16 24 C 0.17 3.06 13.23 130.48 1.73 4.78 16 25 O -0.22 -4.94 10.77 -3.69 -0.04 -4.98 16 26 C 0.06 0.95 7.96 86.17 0.69 1.64 16 27 C 0.11 4.78 8.39 86.48 0.73 5.51 16 28 H 0.26 14.44 7.04 -92.71 -0.65 13.79 16 29 H 0.03 1.59 7.61 -2.39 -0.02 1.57 16 30 H 0.08 3.21 8.09 -2.39 -0.02 3.19 16 31 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 33 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.06 1.88 7.35 -2.39 -0.02 1.86 16 35 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.14 1.41 8.08 -2.39 -0.02 1.39 16 37 H 0.06 1.09 7.38 -2.39 -0.02 1.08 16 38 H 0.20 2.91 8.06 -2.91 -0.02 2.88 16 39 H 0.29 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 1.24 7.93 -2.39 -0.02 1.22 16 42 H 0.06 2.48 8.14 -2.38 -0.02 2.47 16 43 H 0.08 3.25 8.09 -2.39 -0.02 3.23 16 Total: -1.00 -69.26 367.62 -1.44 -70.70 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 1.13 Total: 19.67 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 7.43 Total: 1.01 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -11.96 Total: -109.50 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.09 Total: -30.24 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.05 Total: 48.36 kcal Total: -69.26 -1.44 -70.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277554116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.523 kcal (2) G-P(sol) polarization free energy of solvation -69.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds