Wall clock time and date at job start Tue Mar 31 2020 11:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00232 * 2 1 4 4 H 1.48497 * 109.47420 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46971 * 299.99776 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99521 * 3 2 1 7 7 C 1.37878 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00113 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.53947 * 113.73968 * 179.97438 * 9 7 2 11 11 N 1.47584 * 86.11565 * 222.04272 * 10 9 7 12 12 C 1.34769 * 134.49063 * 204.63541 * 11 10 9 13 13 O 1.21281 * 120.00474 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.54891 * 129.08893 * 299.93972 * 14 12 11 16 16 C 1.57167 * 77.91549 * 180.16406 * 15 14 12 17 17 N 1.46907 * 129.24819 * 179.19754 * 16 15 14 18 18 C 1.46897 * 110.99968 * 61.28614 * 17 16 15 19 19 C 1.50704 * 109.46973 * 179.97438 * 18 17 16 20 20 N 1.30252 * 125.61832 * 89.69496 * 19 18 17 21 21 C 1.34476 * 108.69805 * 179.83854 * 20 19 18 22 22 C 1.34332 * 107.67298 * 0.42028 * 21 20 19 23 23 O 1.33971 * 125.61559 * 269.99869 * 19 18 17 24 24 C 1.54412 * 83.73370 * 42.47561 * 16 15 14 25 25 C 1.54885 * 129.09037 * 60.06677 * 14 12 11 26 26 C 1.47577 * 91.01296 * 24.63911 * 11 10 9 27 27 H 0.97000 * 119.99858 * 0.02562 * 1 2 3 28 28 H 1.08997 * 113.01667 * 311.65275 * 9 7 2 29 29 H 1.09001 * 113.76955 * 336.34307 * 10 9 7 30 30 H 1.08997 * 113.77064 * 107.74383 * 10 9 7 31 31 H 1.09001 * 114.98080 * 291.95801 * 15 14 12 32 32 H 1.09003 * 114.97457 * 67.13363 * 15 14 12 33 33 H 1.00891 * 110.99862 * 297.32983 * 17 16 15 34 34 H 1.08997 * 109.46976 * 300.00026 * 18 17 16 35 35 H 1.09002 * 109.47183 * 60.00026 * 18 17 16 36 36 H 1.08008 * 126.16611 * 180.16602 * 21 20 19 37 37 H 1.07991 * 126.44736 * 179.76809 * 22 21 20 38 38 H 1.08992 * 114.93459 * 205.06231 * 24 16 15 39 39 H 1.08998 * 114.98218 * 70.02770 * 24 16 15 40 40 H 1.09008 * 114.97367 * 292.86602 * 25 14 12 41 41 H 1.08998 * 114.98354 * 68.03524 * 25 14 12 42 42 H 1.08995 * 113.76947 * 221.05456 * 26 11 10 43 43 H 1.09005 * 113.76708 * 89.66367 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.1614 -3.7405 0.0005 11 7 1.2205 -4.3066 -0.9855 12 6 0.8822 -5.5566 -1.3586 13 8 1.4092 -6.5115 -0.8281 14 6 -0.1511 -5.7681 -2.4351 15 6 -1.6346 -5.3237 -2.4657 16 6 -1.4825 -6.0579 -3.8470 17 7 -2.4874 -6.2858 -4.8940 18 6 -2.9927 -5.0127 -5.4248 19 6 -4.0185 -5.2862 -6.4944 20 7 -5.2986 -5.4274 -6.2995 21 6 -5.8925 -5.6561 -7.4841 22 6 -4.9347 -5.6618 -8.4260 23 8 -3.7632 -5.4299 -7.8017 24 6 -0.6905 -7.0923 -3.0181 25 6 -0.1340 -5.2986 -3.9110 26 6 0.7991 -2.9540 -1.3990 27 1 -0.4850 0.8401 -0.0004 28 1 0.4602 -2.5346 0.7498 29 1 3.1580 -3.5544 -0.3997 30 1 2.1761 -4.2746 0.9506 31 1 -2.2818 -5.8304 -1.7498 32 1 -1.7912 -4.2461 -2.5160 33 1 -3.2428 -6.8600 -4.5512 34 1 -3.4513 -4.4396 -4.6190 35 1 -2.1667 -4.4434 -5.8511 36 1 -6.9486 -5.8116 -7.6482 37 1 -5.0769 -5.8219 -9.4845 38 1 0.0364 -7.6750 -3.5839 39 1 -1.2905 -7.6869 -2.3293 40 1 -0.1970 -4.2195 -4.0514 41 1 0.6143 -5.7819 -4.5391 42 1 -0.2738 -2.8602 -1.5663 43 1 1.3956 -2.5369 -2.2104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277583520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:24 Heat of formation + Delta-G solvation = 128.362770 kcal Electronic energy + Delta-G solvation = -25725.461050 eV Core-core repulsion = 21970.567214 eV Total energy + Delta-G solvation = -3754.893836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.59197 -41.99956 -38.98532 -36.83071 -35.55031 -34.82855 -32.70190 -30.57263 -29.33708 -26.73986 -25.82368 -25.68484 -25.57106 -25.10173 -23.33906 -22.86436 -21.49821 -20.19985 -18.80178 -17.90487 -17.83600 -16.99879 -16.83682 -16.46744 -15.88869 -15.57212 -14.98963 -14.81108 -14.67565 -14.49406 -14.23085 -14.10235 -13.75900 -13.39614 -13.22502 -12.76582 -12.31900 -11.98536 -11.66653 -11.63398 -11.56508 -11.40344 -11.21373 -11.18559 -11.00044 -10.90486 -10.81651 -10.46780 -10.40816 -10.23647 -9.68947 -9.34364 -9.29608 -9.02658 -8.78067 -8.62360 -7.89665 -6.21647 -4.27069 1.11245 2.29745 2.44599 2.93585 3.20349 3.28968 3.31063 3.34622 3.58089 3.84178 4.13342 4.20019 4.30472 4.37545 4.55345 4.61306 4.69450 4.71572 4.94066 5.05335 5.08683 5.11393 5.44576 5.54554 5.56762 5.58903 5.71178 5.83654 5.87478 5.93684 5.94922 5.98220 6.06630 6.17178 6.25610 6.36011 6.53947 6.56979 6.64485 6.78379 6.86922 7.41583 7.51966 7.76141 8.13238 8.45206 8.73479 8.76933 9.40028 10.87932 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013100 B = 0.002913 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.833597 B = 9610.551590 C =11300.362586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.104 3.896 11 N -0.632 5.632 12 C 0.586 3.414 13 O -0.559 6.559 14 C -0.142 4.142 15 C -0.134 4.134 16 C 0.043 3.957 17 N -0.621 5.621 18 C 0.154 3.846 19 C 0.198 3.802 20 N -0.479 5.479 21 C -0.046 4.046 22 C -0.073 4.073 23 O -0.194 6.194 24 C -0.075 4.075 25 C -0.087 4.087 26 C 0.106 3.894 27 H 0.263 0.737 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.357 0.643 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.184 0.816 37 H 0.216 0.784 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.212 -9.485 -14.734 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.014 3.986 10 C -0.018 4.018 11 N -0.364 5.364 12 C 0.374 3.626 13 O -0.439 6.439 14 C -0.146 4.146 15 C -0.175 4.175 16 C -0.050 4.050 17 N -0.251 5.251 18 C 0.025 3.975 19 C -0.009 4.009 20 N -0.210 5.210 21 C -0.185 4.185 22 C -0.144 4.144 23 O -0.079 6.079 24 C -0.114 4.114 25 C -0.126 4.126 26 C -0.017 4.017 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.178 0.822 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.201 0.799 37 H 0.232 0.768 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.941 -10.092 -14.474 19.781 hybrid contribution -0.174 1.140 -0.275 1.186 sum -9.114 -8.951 -14.749 19.512 Atomic orbital electron populations 1.69954 1.06035 1.27011 1.49281 1.25021 0.94868 0.99376 0.94294 0.86498 0.80226 0.83369 0.77717 1.19570 1.20914 1.20882 1.21006 0.93094 0.89639 1.51909 0.91801 1.20511 0.94364 0.91343 0.92358 1.23541 0.94356 0.93443 0.90443 1.50340 1.41766 1.04540 1.39785 1.18110 0.81371 0.81968 0.81164 1.90645 1.56080 1.40729 1.56472 1.23328 0.96076 0.99555 0.95616 1.25176 0.93756 1.01320 0.97234 1.24306 0.93200 0.98188 0.89293 1.59822 1.16843 1.14718 1.33681 1.20198 0.93682 0.92290 0.91350 1.26097 0.92414 1.00216 0.82167 1.70480 1.05168 1.17400 1.27925 1.23382 1.01595 1.05726 0.87757 1.25102 0.82461 1.06550 1.00289 1.84493 1.34873 1.67055 1.21431 1.23772 0.97100 0.94504 0.96000 1.24113 0.94970 1.00338 0.93144 1.23734 0.99273 0.76607 1.02036 0.92703 0.91696 0.90655 0.91944 0.90478 0.89803 0.82246 0.89709 0.87446 0.79875 0.76799 0.90058 0.90399 0.89840 0.90153 0.91880 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.49 13.27 55.43 0.74 -22.75 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 19.71 29.54 -169.99 -5.02 14.69 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -12.86 8.77 -34.44 -0.30 -13.17 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.03 0.76 3.62 -90.85 -0.33 0.43 16 10 C 0.10 2.12 8.39 -2.97 -0.02 2.09 16 11 N -0.63 -12.61 3.61 -178.43 -0.64 -13.26 16 12 C 0.59 11.49 8.17 -10.99 -0.09 11.40 16 13 O -0.56 -12.64 17.82 5.56 0.10 -12.54 16 14 C -0.14 -2.16 3.11 -172.27 -0.54 -2.70 16 15 C -0.13 -1.76 7.95 -24.71 -0.20 -1.95 16 16 C 0.04 0.49 3.89 -146.94 -0.57 -0.08 16 17 N -0.62 -6.35 6.84 -117.64 -0.81 -7.15 16 18 C 0.15 1.50 6.31 -4.98 -0.03 1.47 16 19 C 0.20 2.15 7.86 -12.95 -0.10 2.05 16 20 N -0.48 -5.50 11.29 -11.10 -0.13 -5.63 16 21 C -0.05 -0.40 11.89 -17.77 -0.21 -0.61 16 22 C -0.07 -0.55 12.18 29.35 0.36 -0.20 16 23 O -0.19 -2.02 10.78 5.34 0.06 -1.97 16 24 C -0.08 -0.97 7.78 -26.71 -0.21 -1.18 16 25 C -0.09 -1.11 7.84 -25.99 -0.20 -1.31 16 26 C 0.11 2.14 8.17 -2.98 -0.02 2.11 16 27 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 28 H 0.06 1.62 8.13 -51.93 -0.42 1.20 16 29 H 0.08 1.48 8.09 -51.93 -0.42 1.06 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 0.98 7.91 -51.93 -0.41 0.57 16 32 H 0.08 1.12 7.45 -51.93 -0.39 0.73 16 33 H 0.36 3.44 8.81 -39.30 -0.35 3.09 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.18 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.22 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.08 1.03 7.94 -51.93 -0.41 0.61 16 39 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16 40 H 0.08 1.04 7.97 -51.92 -0.41 0.62 16 41 H 0.08 0.99 7.93 -51.93 -0.41 0.57 16 42 H 0.06 1.25 7.63 -51.93 -0.40 0.86 16 43 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -30.40 370.36 -8.80 -39.20 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.11 Total: 3.85 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.57 Total: -0.02 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.84 Total: -48.79 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.16 Total: -14.51 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.40 -8.80 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277583520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.562 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds