Wall clock time and date at job start Tue Mar 31 2020 11:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00232 * 2 1 4 4 H 1.48497 * 109.47420 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46971 * 299.99776 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99521 * 3 2 1 7 7 C 1.37878 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00113 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.53947 * 113.73968 * 179.97438 * 9 7 2 11 11 N 1.47584 * 86.11565 * 222.04272 * 10 9 7 12 12 C 1.34769 * 134.49063 * 204.63541 * 11 10 9 13 13 O 1.21281 * 120.00474 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.54891 * 129.08893 * 299.93972 * 14 12 11 16 16 C 1.57167 * 77.91549 * 180.16406 * 15 14 12 17 17 N 1.46907 * 129.24819 * 179.19754 * 16 15 14 18 18 C 1.46897 * 110.99968 * 61.28614 * 17 16 15 19 19 C 1.50704 * 109.46973 * 179.97438 * 18 17 16 20 20 N 1.30252 * 125.61832 * 89.69496 * 19 18 17 21 21 C 1.34476 * 108.69805 * 179.83854 * 20 19 18 22 22 C 1.34332 * 107.67298 * 0.42028 * 21 20 19 23 23 O 1.33971 * 125.61559 * 269.99869 * 19 18 17 24 24 C 1.54412 * 83.73370 * 42.47561 * 16 15 14 25 25 C 1.54885 * 129.09037 * 60.06677 * 14 12 11 26 26 C 1.47577 * 91.01296 * 24.63911 * 11 10 9 27 27 H 0.97000 * 119.99858 * 0.02562 * 1 2 3 28 28 H 1.08997 * 113.01667 * 311.65275 * 9 7 2 29 29 H 1.09001 * 113.76955 * 336.34307 * 10 9 7 30 30 H 1.08997 * 113.77064 * 107.74383 * 10 9 7 31 31 H 1.09001 * 114.98080 * 291.95801 * 15 14 12 32 32 H 1.09003 * 114.97457 * 67.13363 * 15 14 12 33 33 H 1.00891 * 110.99862 * 297.32983 * 17 16 15 34 34 H 1.08997 * 109.46976 * 300.00026 * 18 17 16 35 35 H 1.09002 * 109.47183 * 60.00026 * 18 17 16 36 36 H 1.08008 * 126.16611 * 180.16602 * 21 20 19 37 37 H 1.07991 * 126.44736 * 179.76809 * 22 21 20 38 38 H 1.08992 * 114.93459 * 205.06231 * 24 16 15 39 39 H 1.08998 * 114.98218 * 70.02770 * 24 16 15 40 40 H 1.09008 * 114.97367 * 292.86602 * 25 14 12 41 41 H 1.08998 * 114.98354 * 68.03524 * 25 14 12 42 42 H 1.08995 * 113.76947 * 221.05456 * 26 11 10 43 43 H 1.09005 * 113.76708 * 89.66367 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.1614 -3.7405 0.0005 11 7 1.2205 -4.3066 -0.9855 12 6 0.8822 -5.5566 -1.3586 13 8 1.4092 -6.5115 -0.8281 14 6 -0.1511 -5.7681 -2.4351 15 6 -1.6346 -5.3237 -2.4657 16 6 -1.4825 -6.0579 -3.8470 17 7 -2.4874 -6.2858 -4.8940 18 6 -2.9927 -5.0127 -5.4248 19 6 -4.0185 -5.2862 -6.4944 20 7 -5.2986 -5.4274 -6.2995 21 6 -5.8925 -5.6561 -7.4841 22 6 -4.9347 -5.6618 -8.4260 23 8 -3.7632 -5.4299 -7.8017 24 6 -0.6905 -7.0923 -3.0181 25 6 -0.1340 -5.2986 -3.9110 26 6 0.7991 -2.9540 -1.3990 27 1 -0.4850 0.8401 -0.0004 28 1 0.4602 -2.5346 0.7498 29 1 3.1580 -3.5544 -0.3997 30 1 2.1761 -4.2746 0.9506 31 1 -2.2818 -5.8304 -1.7498 32 1 -1.7912 -4.2461 -2.5160 33 1 -3.2428 -6.8600 -4.5512 34 1 -3.4513 -4.4396 -4.6190 35 1 -2.1667 -4.4434 -5.8511 36 1 -6.9486 -5.8116 -7.6482 37 1 -5.0769 -5.8219 -9.4845 38 1 0.0364 -7.6750 -3.5839 39 1 -1.2905 -7.6869 -2.3293 40 1 -0.1970 -4.2195 -4.0514 41 1 0.6143 -5.7819 -4.5391 42 1 -0.2738 -2.8602 -1.5663 43 1 1.3956 -2.5369 -2.2104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277583520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:23 Heat of formation + Delta-G solvation = 106.487272 kcal Electronic energy + Delta-G solvation = -25726.409642 eV Core-core repulsion = 21970.567214 eV Total energy + Delta-G solvation = -3755.842429 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.27915 -43.08930 -40.60823 -38.49585 -36.36115 -35.56748 -34.61621 -31.36552 -30.95818 -27.83010 -27.12336 -26.92522 -26.78929 -26.56284 -24.73370 -23.52035 -22.24557 -21.78546 -20.05400 -19.21000 -18.69428 -18.55752 -17.92408 -17.57519 -17.20675 -16.60361 -16.53843 -16.13493 -15.71552 -15.54067 -15.37670 -15.14922 -14.89634 -14.80244 -14.14322 -13.99640 -13.85543 -13.31696 -13.25174 -13.11609 -12.79171 -12.64303 -12.60240 -12.39643 -12.29311 -12.22307 -12.20078 -11.63449 -11.50849 -11.37464 -11.30093 -11.11861 -10.75607 -10.53343 -9.96743 -9.65498 -9.56426 -8.15421 -6.25990 0.44129 1.44553 1.46325 1.50634 1.60203 1.61331 1.79642 1.91134 2.46716 2.66709 3.04880 3.12949 3.15644 3.24547 3.27892 3.45421 3.53974 3.69616 3.99692 4.13321 4.29753 4.34937 4.36829 4.43747 4.50577 4.57241 4.58032 4.65141 4.68467 4.82530 4.82901 4.85575 4.87858 4.91722 4.95090 4.97200 5.03426 5.10906 5.31469 5.61245 5.68664 5.82825 6.05279 6.23695 6.73106 6.81889 6.85364 7.14729 7.43923 8.94292 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013100 B = 0.002913 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.833597 B = 9610.551590 C =11300.362586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.023 3.977 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.528 4.528 8 H 0.065 0.935 9 C 0.023 3.977 10 C 0.107 3.893 11 N -0.633 5.633 12 C 0.582 3.418 13 O -0.594 6.594 14 C -0.173 4.173 15 C -0.131 4.131 16 C 0.075 3.925 17 N -0.616 5.616 18 C 0.156 3.844 19 C 0.181 3.819 20 N -0.505 5.505 21 C -0.068 4.068 22 C -0.060 4.060 23 O -0.208 6.208 24 C -0.072 4.072 25 C -0.080 4.080 26 C 0.124 3.876 27 H 0.264 0.736 28 H 0.036 0.964 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.362 0.638 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.208 0.792 37 H 0.257 0.743 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.640 -9.548 -16.902 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.211 1.211 7 C -0.566 4.566 8 H 0.083 0.917 9 C 0.004 3.996 10 C -0.015 4.015 11 N -0.365 5.365 12 C 0.372 3.628 13 O -0.477 6.477 14 C -0.177 4.177 15 C -0.172 4.172 16 C -0.018 4.018 17 N -0.246 5.246 18 C 0.028 3.972 19 C -0.026 4.026 20 N -0.237 5.237 21 C -0.206 4.206 22 C -0.130 4.130 23 O -0.093 6.093 24 C -0.110 4.110 25 C -0.118 4.118 26 C 0.002 3.998 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.183 0.817 34 H 0.104 0.896 35 H 0.133 0.867 36 H 0.225 0.775 37 H 0.273 0.727 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.371 -10.159 -16.656 21.643 hybrid contribution -0.086 1.109 0.395 1.181 sum -9.457 -9.049 -16.262 20.875 Atomic orbital electron populations 1.70052 1.07266 1.27700 1.50405 1.25711 0.95557 1.02342 0.94159 0.85546 0.79240 0.79628 0.77473 1.18958 1.20540 1.21119 1.21280 0.93320 0.90571 1.51438 0.91671 1.20411 0.94224 0.91811 0.93198 1.23451 0.94605 0.92443 0.90989 1.50321 1.41644 1.04860 1.39676 1.18748 0.81559 0.81000 0.81448 1.90614 1.57580 1.41497 1.57980 1.23281 0.96253 1.02231 0.95917 1.25202 0.92024 1.01362 0.98607 1.23891 0.92753 0.96626 0.88513 1.59832 1.16947 1.15190 1.32644 1.20200 0.93855 0.91860 0.91333 1.26142 0.92451 1.01411 0.82592 1.70450 1.05736 1.17892 1.29584 1.23895 1.03108 1.06328 0.87222 1.25953 0.81187 1.04083 1.01777 1.84492 1.36185 1.67220 1.21419 1.23788 0.97254 0.93859 0.96097 1.24109 0.95868 1.00844 0.90986 1.23463 0.99389 0.76451 1.00512 0.92697 0.94624 0.89601 0.91930 0.90273 0.90145 0.81656 0.89650 0.86725 0.77515 0.72719 0.89604 0.89959 0.89420 0.89394 0.91691 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.89 13.27 21.45 0.28 -48.61 16 2 C 0.02 1.15 5.46 84.66 0.46 1.61 16 3 Si 0.96 40.17 29.54 68.60 2.03 42.20 16 4 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.53 -26.22 8.77 25.60 0.22 -26.00 16 8 H 0.07 3.16 7.81 -2.91 -0.02 3.13 16 9 C 0.02 1.05 3.62 -10.88 -0.04 1.02 16 10 C 0.11 4.41 8.39 86.48 0.73 5.13 16 11 N -0.63 -25.35 3.61 -836.83 -3.02 -28.37 16 12 C 0.58 22.86 8.17 87.66 0.72 23.58 16 13 O -0.59 -27.11 17.82 -3.03 -0.05 -27.17 16 14 C -0.17 -5.15 3.11 -63.68 -0.20 -5.35 16 15 C -0.13 -3.31 7.95 31.90 0.25 -3.05 16 16 C 0.08 1.59 3.89 -6.41 -0.02 1.56 16 17 N -0.62 -11.47 6.84 -526.10 -3.60 -15.07 16 18 C 0.16 2.82 6.31 85.56 0.54 3.36 16 19 C 0.18 3.69 7.86 88.34 0.69 4.38 16 20 N -0.51 -11.00 11.29 -303.82 -3.43 -14.43 16 21 C -0.07 -1.04 11.89 83.39 0.99 -0.05 16 22 C -0.06 -0.75 12.18 66.93 0.81 0.06 16 23 O -0.21 -3.96 10.78 -3.82 -0.04 -4.01 16 24 C -0.07 -1.75 7.78 30.61 0.24 -1.51 16 25 C -0.08 -1.90 7.84 31.07 0.24 -1.66 16 26 C 0.12 5.01 8.17 86.48 0.71 5.72 16 27 H 0.26 13.43 8.31 -92.71 -0.77 12.65 16 28 H 0.04 1.84 8.13 -2.39 -0.02 1.82 16 29 H 0.09 3.34 8.09 -2.39 -0.02 3.32 16 30 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.08 1.95 7.91 -2.39 -0.02 1.93 16 32 H 0.08 2.08 7.45 -2.39 -0.02 2.07 16 33 H 0.36 6.35 8.81 -89.70 -0.79 5.56 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.26 0.63 8.06 -2.92 -0.02 0.61 16 38 H 0.09 2.03 7.94 -2.39 -0.02 2.01 16 39 H 0.08 1.93 7.91 -2.39 -0.02 1.91 16 40 H 0.09 2.03 7.97 -2.38 -0.02 2.01 16 41 H 0.09 1.98 7.93 -2.39 -0.02 1.96 16 42 H 0.06 2.59 7.63 -2.39 -0.02 2.57 16 43 H 0.08 3.18 8.09 -2.38 -0.02 3.16 16 Total: -1.00 -65.22 370.36 -1.24 -66.47 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.24 Total: 20.19 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 6.35 Total: 8.79 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -9.77 Total: -106.48 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.10 Total: -31.17 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -65.22 -1.24 -66.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277583520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.955 kcal (2) G-P(sol) polarization free energy of solvation -65.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds