Wall clock time and date at job start Tue Mar 31 2020 11:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48491 * 109.47618 * 270.00329 * 3 2 1 5 5 H 1.48505 * 109.47209 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.46699 * 149.99913 * 3 2 1 7 7 C 1.37872 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00156 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.53498 * 114.20869 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98828 * 220.34462 * 10 9 7 12 12 C 1.34773 * 136.05800 * 207.08107 * 11 10 9 13 13 O 1.21281 * 120.00143 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.99979 * 180.02562 * 12 11 10 15 15 H 1.09007 * 115.59268 * 325.81958 * 14 12 11 16 16 C 1.53206 * 117.52687 * 111.64331 * 14 12 11 17 17 C 1.52113 * 59.76490 * 107.42118 * 16 14 12 18 18 C 1.52654 * 129.72696 * 118.97736 * 17 16 14 19 19 N 1.47659 * 87.64266 * 113.72275 * 18 17 16 20 20 C 1.46898 * 110.99952 * 137.99843 * 19 18 17 21 21 C 1.50702 * 109.47322 * 169.99729 * 20 19 18 22 22 N 1.30258 * 125.61823 * 89.97441 * 21 20 19 23 23 C 1.34472 * 108.70247 * 180.02562 * 22 21 20 24 24 C 1.34327 * 107.67005 * 0.02562 * 23 22 21 25 25 O 1.33964 * 125.62261 * 270.00418 * 21 20 19 26 26 C 1.47660 * 88.14241 * 26.18370 * 19 18 17 27 27 C 1.47070 * 87.88321 * 27.34026 * 11 10 9 28 28 H 0.97004 * 119.99980 * 359.97438 * 1 2 3 29 29 H 1.09002 * 113.28222 * 313.06725 * 9 7 2 30 30 H 1.09001 * 113.46897 * 105.56274 * 10 9 7 31 31 H 1.09006 * 113.51515 * 335.13477 * 10 9 7 32 32 H 1.09006 * 117.51717 * 0.02562 * 16 14 12 33 33 H 1.08992 * 117.56922 * 214.82832 * 16 14 12 34 34 H 1.08993 * 113.52453 * 359.03036 * 18 17 16 35 35 H 1.09005 * 113.51940 * 228.40896 * 18 17 16 36 36 H 1.09000 * 109.47395 * 50.00193 * 20 19 18 37 37 H 1.09003 * 109.47163 * 289.99439 * 20 19 18 38 38 H 1.08005 * 126.17001 * 179.97438 * 23 22 21 39 39 H 1.08001 * 126.44712 * 180.02562 * 24 23 22 40 40 H 1.09000 * 113.51966 * 88.50560 * 26 19 18 41 41 H 1.09000 * 113.52350 * 219.12111 * 26 19 18 42 42 H 1.09006 * 113.46687 * 87.43516 * 27 11 10 43 43 H 1.08998 * 113.46935 * 217.87508 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.3999 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.1488 -3.7442 -0.0005 11 7 1.2099 -4.3575 -0.9520 12 6 0.8355 -5.6114 -1.2743 13 8 1.3301 -6.5584 -0.7003 14 6 -0.1978 -5.8367 -2.3478 15 1 -0.9816 -5.0820 -2.4129 16 6 0.2687 -6.4872 -3.6541 17 6 -0.5786 -7.2747 -2.6662 18 6 -1.9588 -7.9013 -2.8471 19 7 -1.3118 -9.2205 -2.7006 20 6 -2.1196 -10.1124 -1.8580 21 6 -1.5634 -11.5112 -1.9294 22 7 -0.6528 -12.0066 -1.1407 23 6 -0.4106 -13.2777 -1.5068 24 6 -1.2033 -13.5585 -2.5542 25 8 -1.9235 -12.4498 -2.8148 26 6 -0.2538 -8.5603 -1.9100 27 6 0.8644 -3.0005 -1.4017 28 1 -0.4850 0.8401 0.0004 29 1 0.4438 -2.5305 0.7312 30 1 2.1851 -4.2532 0.9626 31 1 3.1388 -3.5666 -0.4208 32 1 1.3228 -6.7524 -3.7364 33 1 -0.2079 -6.1609 -4.5784 34 1 -2.3864 -7.7339 -3.8356 35 1 -2.6528 -7.6653 -2.0404 36 1 -3.1502 -10.1127 -2.2130 37 1 -2.0907 -9.7622 -0.8262 38 1 0.2949 -13.9512 -1.0428 39 1 -1.2546 -14.4967 -3.0867 40 1 -0.4767 -8.5063 -0.8444 41 1 0.7456 -8.9445 -2.1142 42 1 1.5155 -2.6260 -2.1916 43 1 -0.1936 -2.8759 -1.6323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277583780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:02 Heat of formation + Delta-G solvation = 103.765859 kcal Electronic energy + Delta-G solvation = -25433.223779 eV Core-core repulsion = 21677.263341 eV Total energy + Delta-G solvation = -3755.960438 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.48516 -40.76485 -39.22101 -37.20910 -35.19050 -34.80948 -32.70643 -31.65539 -29.34725 -28.15340 -26.15857 -25.59605 -24.97123 -23.70889 -23.17940 -22.75730 -21.27054 -20.25164 -18.80379 -18.01665 -17.70370 -16.94525 -16.89985 -16.48958 -15.80831 -15.68087 -15.59574 -14.95554 -14.76707 -14.41687 -14.35249 -13.87030 -13.59287 -13.28835 -13.04296 -12.80597 -12.46561 -12.30177 -11.91123 -11.64328 -11.53133 -11.51399 -11.32430 -10.98792 -10.83279 -10.75213 -10.61263 -10.44136 -10.33306 -10.30799 -9.59556 -9.26812 -9.19436 -9.06481 -8.93041 -8.60105 -7.86512 -6.20572 -4.26011 1.22786 2.42648 2.54596 2.92054 3.22269 3.29998 3.32322 3.38511 3.65816 3.81255 4.14861 4.28094 4.32729 4.47468 4.56671 4.75936 4.83350 4.88774 5.02955 5.08311 5.18135 5.22090 5.28713 5.41434 5.51997 5.63003 5.64225 5.68882 5.80931 5.93568 5.97762 6.03697 6.06773 6.07785 6.17130 6.26059 6.43161 6.56516 6.64987 6.72771 6.80347 7.53407 7.54574 7.77346 8.15962 8.51889 8.77082 8.78452 9.40898 10.89162 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.037244 B = 0.002153 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.614524 B =13002.152702 C =13303.783521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.035 3.965 10 C 0.100 3.900 11 N -0.639 5.639 12 C 0.559 3.441 13 O -0.561 6.561 14 C -0.157 4.157 15 H 0.125 0.875 16 C -0.109 4.109 17 C -0.141 4.141 18 C 0.045 3.955 19 N -0.472 5.472 20 C 0.111 3.889 21 C 0.210 3.790 22 N -0.478 5.478 23 C -0.044 4.044 24 C -0.080 4.080 25 O -0.199 6.199 26 C 0.063 3.937 27 C 0.100 3.900 28 H 0.264 0.736 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.183 0.817 39 H 0.214 0.786 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.263 -19.589 -7.710 21.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.015 3.985 10 C -0.022 4.022 11 N -0.372 5.372 12 C 0.349 3.651 13 O -0.441 6.441 14 C -0.179 4.179 15 H 0.142 0.858 16 C -0.146 4.146 17 C -0.142 4.142 18 C -0.083 4.083 19 N -0.195 5.195 20 C -0.018 4.018 21 C 0.002 3.998 22 N -0.208 5.208 23 C -0.182 4.182 24 C -0.151 4.151 25 O -0.084 6.084 26 C -0.064 4.064 27 C -0.023 4.023 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.200 0.800 39 H 0.231 0.769 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.854 -20.265 -7.569 22.410 hybrid contribution -0.061 0.759 0.053 0.763 sum -5.914 -19.506 -7.516 21.724 Atomic orbital electron populations 1.69951 1.06067 1.27134 1.49147 1.25030 0.94878 0.99416 0.94236 0.86531 0.79924 0.82963 0.78252 1.20506 1.21135 1.19683 1.20915 0.93030 0.89566 1.51995 0.91835 1.20396 0.94764 0.91134 0.92174 1.23345 0.94321 0.93145 0.91370 1.49939 1.42476 1.04824 1.39950 1.19031 0.82273 0.81248 0.82591 1.90639 1.57965 1.40846 1.54661 1.22072 1.01533 0.96419 0.97830 0.85758 1.22681 1.00210 0.99544 0.92169 1.21849 0.97356 0.91520 1.03493 1.23360 0.94576 0.87433 1.02932 1.68947 1.08037 1.07767 1.34768 1.21033 0.97792 0.83539 0.99445 1.26005 0.94558 0.93091 0.86152 1.70493 1.14195 1.09068 1.26998 1.23382 1.03138 0.93612 0.98087 1.25027 0.97053 0.91265 1.01734 1.84452 1.53895 1.20585 1.49500 1.23285 0.97336 0.89402 0.96408 1.23655 0.99738 0.76834 1.02059 0.92633 0.91341 0.92495 0.90921 0.88001 0.87426 0.88795 0.90171 0.87882 0.88960 0.80012 0.76940 0.89761 0.89290 0.90771 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.76 13.26 55.43 0.74 -23.03 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 7 C -0.52 -12.98 8.82 -34.44 -0.30 -13.28 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.03 0.80 3.80 -91.12 -0.35 0.45 16 10 C 0.10 2.08 8.17 -8.51 -0.07 2.01 16 11 N -0.64 -12.84 3.69 -185.05 -0.68 -13.52 16 12 C 0.56 10.70 7.86 -10.99 -0.09 10.62 16 13 O -0.56 -12.14 16.07 5.56 0.09 -12.05 16 14 C -0.16 -2.31 6.02 -92.12 -0.55 -2.87 16 15 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 16 C -0.11 -1.35 10.24 -27.08 -0.28 -1.63 16 17 C -0.14 -1.81 3.13 -155.77 -0.49 -2.30 16 18 C 0.05 0.45 7.71 -6.76 -0.05 0.40 16 19 N -0.47 -5.50 6.31 -245.39 -1.55 -7.05 16 20 C 0.11 1.13 5.44 -4.98 -0.03 1.10 16 21 C 0.21 2.54 7.93 -12.94 -0.10 2.43 16 22 N -0.48 -6.36 11.29 -11.10 -0.13 -6.48 16 23 C -0.04 -0.44 11.89 -17.77 -0.21 -0.65 16 24 C -0.08 -0.69 12.18 29.35 0.36 -0.33 16 25 O -0.20 -2.23 10.78 5.36 0.06 -2.18 16 26 C 0.06 0.88 6.22 -6.76 -0.04 0.84 16 27 C 0.10 2.04 7.99 -8.37 -0.07 1.98 16 28 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.07 1.73 8.11 -51.93 -0.42 1.31 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 1.46 8.10 -51.93 -0.42 1.03 16 32 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.70 7.91 -51.93 -0.41 0.29 16 36 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.09 0.90 7.31 -51.93 -0.38 0.52 16 38 H 0.18 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.21 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.08 1.25 7.39 -51.93 -0.38 0.86 16 41 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -31.17 369.33 -9.50 -40.67 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.21 Total: 2.85 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.37 Total: 0.42 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -1.62 Total: -50.08 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.15 Total: -14.23 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.17 -9.50 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277583780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.437 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds