Wall clock time and date at job start Tue Mar 31 2020 11:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.53949 * 113.74589 * 276.67478 * 9 7 2 11 11 N 1.47574 * 86.11804 * 222.05032 * 10 9 7 12 12 C 1.34781 * 134.49483 * 204.63522 * 11 10 9 13 13 O 1.21281 * 120.00396 * 180.02562 * 12 11 10 14 14 C 1.50700 * 119.99459 * 0.02562 * 12 11 10 15 15 H 1.09002 * 115.56372 * 34.41594 * 14 12 11 16 16 C 1.53149 * 117.51468 * 248.66127 * 14 12 11 17 17 C 1.52335 * 117.51591 * 180.16723 * 14 12 11 18 18 C 1.53289 * 128.80219 * 349.55693 * 17 14 12 19 19 N 1.48098 * 85.92758 * 196.85827 * 18 17 14 20 20 C 1.46901 * 111.00060 * 137.12145 * 19 18 17 21 21 C 1.50699 * 109.46636 * 90.41949 * 20 19 18 22 22 N 1.30257 * 125.62285 * 89.99767 * 21 20 19 23 23 C 1.34474 * 108.70329 * 179.97438 * 22 21 20 24 24 C 1.34332 * 107.67159 * 0.02562 * 23 22 21 25 25 O 1.33973 * 125.62044 * 269.69201 * 21 20 19 26 26 C 1.48108 * 90.95557 * 24.15072 * 19 18 17 27 27 C 1.47583 * 91.01934 * 24.63724 * 11 10 9 28 28 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 29 29 H 1.09004 * 112.94881 * 48.41102 * 9 7 2 30 30 H 1.09003 * 113.76162 * 336.35097 * 10 9 7 31 31 H 1.08991 * 113.76848 * 107.74320 * 10 9 7 32 32 H 1.09004 * 117.52026 * 0.02562 * 16 14 12 33 33 H 1.09000 * 117.51563 * 145.12108 * 16 14 12 34 34 H 1.08999 * 113.80412 * 311.11271 * 18 17 14 35 35 H 1.09003 * 113.79921 * 82.60531 * 18 17 14 36 36 H 1.09001 * 109.47406 * 210.41479 * 20 19 18 37 37 H 1.08999 * 109.47447 * 330.42247 * 20 19 18 38 38 H 1.07996 * 126.16789 * 180.02562 * 23 22 21 39 39 H 1.08001 * 126.44913 * 180.02562 * 24 23 22 40 40 H 1.08995 * 113.80023 * 221.60244 * 26 19 18 41 41 H 1.08999 * 113.90528 * 90.11496 * 26 19 18 42 42 H 1.08999 * 113.77005 * 221.06103 * 27 11 10 43 43 H 1.09004 * 113.87008 * 89.67045 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 0.7999 -2.9531 1.4018 11 7 1.2212 -4.3059 0.9891 12 6 0.8830 -5.5558 1.3631 13 8 1.4105 -6.5109 0.8336 14 6 -0.1505 -5.7665 2.4395 15 1 -0.9594 -5.0362 2.4642 16 6 0.3276 -6.3384 3.7773 17 6 -0.4869 -7.2024 2.8208 18 6 -0.0814 -8.5030 2.1181 19 7 -1.1648 -9.1401 2.9016 20 6 -1.9402 -10.0693 2.0689 21 6 -1.3310 -11.4452 2.1511 22 7 -1.6441 -12.3629 3.0209 23 6 -0.8953 -13.4546 2.7845 24 6 -0.1017 -13.1852 1.7347 25 8 -0.3821 -11.9283 1.3380 26 6 -1.8632 -7.8412 3.0387 27 6 2.1616 -3.7405 0.0021 28 1 -0.4850 -0.8401 -0.0004 29 1 0.4613 -2.5345 -0.7487 30 1 1.3967 -2.5353 2.2126 31 1 -0.2730 -2.8591 1.5695 32 1 1.3897 -6.5618 3.8787 33 1 -0.1672 -5.9848 4.6818 34 1 -0.2613 -8.4967 1.0431 35 1 0.9166 -8.8530 2.3821 36 1 -2.9692 -10.1057 2.4266 37 1 -1.9271 -9.7274 1.0340 38 1 -0.9263 -14.3809 3.3388 39 1 0.6213 -13.8523 1.2891 40 1 -2.2767 -7.6669 4.0319 41 1 -2.5750 -7.6359 2.2391 42 1 2.1759 -4.2752 -0.9476 43 1 3.1590 -3.5536 0.4001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277583781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:04 Heat of formation + Delta-G solvation = 94.138682 kcal Electronic energy + Delta-G solvation = -25544.039748 eV Core-core repulsion = 21787.661844 eV Total energy + Delta-G solvation = -3756.377904 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.50550 -40.68845 -39.24423 -37.24936 -35.20344 -34.85681 -32.90839 -31.63324 -29.20975 -28.09068 -26.40690 -25.50235 -25.02789 -23.64869 -23.18157 -22.77150 -21.27615 -20.49210 -18.94514 -18.16138 -17.70895 -17.22582 -16.93568 -16.64968 -15.90452 -15.80012 -15.39860 -15.06008 -14.88376 -14.64217 -14.05926 -13.83963 -13.49065 -13.39795 -13.19960 -12.97321 -12.65449 -12.16133 -11.94826 -11.78624 -11.70822 -11.54122 -11.51387 -11.00731 -10.84660 -10.78633 -10.75019 -10.43074 -10.32552 -10.21403 -9.70708 -9.47191 -9.18223 -9.02419 -8.65502 -8.57084 -7.99949 -6.55211 -4.28599 1.21261 2.40555 2.53205 2.81798 3.25479 3.36318 3.37987 3.54045 3.57989 3.74011 4.00192 4.20878 4.39468 4.42133 4.57300 4.70640 4.76483 4.92585 4.94779 5.07280 5.13310 5.15199 5.22591 5.36402 5.49851 5.52897 5.61704 5.62833 5.77164 5.81416 5.87146 5.93483 5.95321 6.00531 6.07139 6.12402 6.21030 6.37872 6.40929 6.59457 6.66818 7.24144 7.52506 7.94460 8.24137 8.34602 8.60661 8.68838 9.44255 10.84224 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.036369 B = 0.002199 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.700505 B =12727.371810 C =13061.802226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.024 3.976 3 Si 1.072 2.928 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.596 4.596 8 H 0.057 0.943 9 C 0.013 3.987 10 C 0.097 3.903 11 N -0.635 5.635 12 C 0.553 3.447 13 O -0.561 6.561 14 C -0.163 4.163 15 H 0.123 0.877 16 C -0.110 4.110 17 C -0.138 4.138 18 C 0.062 3.938 19 N -0.475 5.475 20 C 0.114 3.886 21 C 0.207 3.793 22 N -0.474 5.474 23 C -0.046 4.046 24 C -0.077 4.077 25 O -0.201 6.201 26 C 0.050 3.950 27 C 0.112 3.888 28 H 0.270 0.730 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.183 0.817 39 H 0.214 0.786 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.832 -19.300 5.949 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.181 4.181 3 Si 0.899 3.101 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.634 4.634 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.025 4.025 11 N -0.368 5.368 12 C 0.343 3.657 13 O -0.442 6.442 14 C -0.185 4.185 15 H 0.141 0.859 16 C -0.148 4.148 17 C -0.139 4.139 18 C -0.066 4.066 19 N -0.199 5.199 20 C -0.015 4.015 21 C -0.001 4.001 22 N -0.204 5.204 23 C -0.185 4.185 24 C -0.148 4.148 25 O -0.087 6.087 26 C -0.078 4.078 27 C -0.009 4.009 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.134 0.866 37 H 0.094 0.906 38 H 0.200 0.800 39 H 0.231 0.769 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.112 -18.636 6.721 20.233 hybrid contribution 0.556 -1.604 -1.163 2.058 sum -3.555 -20.240 5.558 21.289 Atomic orbital electron populations 1.70796 1.06884 1.30763 1.45364 1.25895 0.96459 1.02799 0.92975 0.83492 0.74726 0.74886 0.76950 1.21311 1.21314 1.20925 1.21840 0.94331 0.90641 1.56572 0.92496 1.20652 0.94908 0.93135 0.91945 1.23854 0.99035 0.77465 1.02162 1.50342 1.41993 1.04572 1.39894 1.19225 0.82412 0.81824 0.82260 1.90624 1.56465 1.40312 1.56754 1.22149 1.01560 0.97431 0.97363 0.85878 1.22755 1.00468 0.99453 0.92076 1.22462 0.97342 0.90603 1.03516 1.23505 0.96869 0.89527 0.96656 1.68587 1.07473 1.07407 1.36425 1.21012 0.97718 0.83982 0.98813 1.26028 0.89269 0.97493 0.87266 1.70440 1.25849 1.00502 1.23583 1.23378 0.96836 0.99165 0.99114 1.25052 1.04506 0.84866 1.00364 1.84481 1.47054 1.26916 1.50218 1.23530 0.94132 0.87128 1.02987 1.23348 0.94312 0.92769 0.90501 0.91935 0.92813 0.90228 0.92214 0.87990 0.87341 0.89854 0.89046 0.86577 0.90589 0.79994 0.76933 0.88328 0.90140 0.92042 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.96 13.65 55.43 0.76 -24.20 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 3 Si 1.07 23.26 29.90 -169.99 -5.08 18.17 16 4 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.60 -15.11 8.77 -34.44 -0.30 -15.41 16 8 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 9 C 0.01 0.29 3.09 -90.84 -0.28 0.01 16 10 C 0.10 1.96 8.13 -2.98 -0.02 1.93 16 11 N -0.63 -12.49 3.61 -178.42 -0.64 -13.13 16 12 C 0.55 10.31 7.84 -10.98 -0.09 10.23 16 13 O -0.56 -11.76 15.86 5.56 0.09 -11.67 16 14 C -0.16 -2.34 5.94 -92.03 -0.55 -2.89 16 15 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 16 C -0.11 -1.35 10.24 -26.92 -0.28 -1.62 16 17 C -0.14 -1.72 3.04 -154.91 -0.47 -2.20 16 18 C 0.06 0.82 6.38 -3.02 -0.02 0.80 16 19 N -0.48 -5.50 6.14 -243.04 -1.49 -6.99 16 20 C 0.11 1.16 5.42 -4.98 -0.03 1.13 16 21 C 0.21 2.51 7.90 -12.95 -0.10 2.41 16 22 N -0.47 -6.02 11.29 -11.10 -0.13 -6.15 16 23 C -0.05 -0.46 11.89 -17.77 -0.21 -0.67 16 24 C -0.08 -0.69 12.18 29.35 0.36 -0.33 16 25 O -0.20 -2.41 10.78 5.35 0.06 -2.35 16 26 C 0.05 0.50 7.96 -3.01 -0.02 0.47 16 27 C 0.11 2.32 8.39 -2.97 -0.02 2.29 16 28 H 0.27 7.34 7.04 -40.82 -0.29 7.05 16 29 H 0.05 1.31 7.61 -51.93 -0.40 0.91 16 30 H 0.08 1.61 8.09 -51.93 -0.42 1.19 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.17 7.35 -51.93 -0.38 0.79 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.12 0.97 8.08 -51.93 -0.42 0.55 16 37 H 0.08 0.69 7.38 -51.93 -0.38 0.31 16 38 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.21 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.69 7.93 -51.93 -0.41 0.27 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -31.71 367.68 -9.17 -40.88 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.13 Total: 3.20 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.13 Total: -3.31 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -1.50 Total: -50.47 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.15 Total: -14.02 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.08 Total: 18.17 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.71 -9.17 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277583781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.018 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds