Wall clock time and date at job start Tue Mar 31 2020 11:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.53949 * 113.74589 * 276.67478 * 9 7 2 11 11 N 1.47574 * 86.11804 * 222.05032 * 10 9 7 12 12 C 1.34781 * 134.49483 * 204.63522 * 11 10 9 13 13 O 1.21281 * 120.00396 * 180.02562 * 12 11 10 14 14 C 1.50700 * 119.99459 * 0.02562 * 12 11 10 15 15 H 1.09002 * 115.56372 * 34.41594 * 14 12 11 16 16 C 1.53149 * 117.51468 * 248.66127 * 14 12 11 17 17 C 1.52335 * 117.51591 * 180.16723 * 14 12 11 18 18 C 1.53289 * 128.80219 * 349.55693 * 17 14 12 19 19 N 1.48098 * 85.92758 * 196.85827 * 18 17 14 20 20 C 1.46901 * 111.00060 * 137.12145 * 19 18 17 21 21 C 1.50699 * 109.46636 * 90.41949 * 20 19 18 22 22 N 1.30257 * 125.62285 * 89.99767 * 21 20 19 23 23 C 1.34474 * 108.70329 * 179.97438 * 22 21 20 24 24 C 1.34332 * 107.67159 * 0.02562 * 23 22 21 25 25 O 1.33973 * 125.62044 * 269.69201 * 21 20 19 26 26 C 1.48108 * 90.95557 * 24.15072 * 19 18 17 27 27 C 1.47583 * 91.01934 * 24.63724 * 11 10 9 28 28 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 29 29 H 1.09004 * 112.94881 * 48.41102 * 9 7 2 30 30 H 1.09003 * 113.76162 * 336.35097 * 10 9 7 31 31 H 1.08991 * 113.76848 * 107.74320 * 10 9 7 32 32 H 1.09004 * 117.52026 * 0.02562 * 16 14 12 33 33 H 1.09000 * 117.51563 * 145.12108 * 16 14 12 34 34 H 1.08999 * 113.80412 * 311.11271 * 18 17 14 35 35 H 1.09003 * 113.79921 * 82.60531 * 18 17 14 36 36 H 1.09001 * 109.47406 * 210.41479 * 20 19 18 37 37 H 1.08999 * 109.47447 * 330.42247 * 20 19 18 38 38 H 1.07996 * 126.16789 * 180.02562 * 23 22 21 39 39 H 1.08001 * 126.44913 * 180.02562 * 24 23 22 40 40 H 1.08995 * 113.80023 * 221.60244 * 26 19 18 41 41 H 1.08999 * 113.90528 * 90.11496 * 26 19 18 42 42 H 1.08999 * 113.77005 * 221.06103 * 27 11 10 43 43 H 1.09004 * 113.87008 * 89.67045 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 0.7999 -2.9531 1.4018 11 7 1.2212 -4.3059 0.9891 12 6 0.8830 -5.5558 1.3631 13 8 1.4105 -6.5109 0.8336 14 6 -0.1505 -5.7665 2.4395 15 1 -0.9594 -5.0362 2.4642 16 6 0.3276 -6.3384 3.7773 17 6 -0.4869 -7.2024 2.8208 18 6 -0.0814 -8.5030 2.1181 19 7 -1.1648 -9.1401 2.9016 20 6 -1.9402 -10.0693 2.0689 21 6 -1.3310 -11.4452 2.1511 22 7 -1.6441 -12.3629 3.0209 23 6 -0.8953 -13.4546 2.7845 24 6 -0.1017 -13.1852 1.7347 25 8 -0.3821 -11.9283 1.3380 26 6 -1.8632 -7.8412 3.0387 27 6 2.1616 -3.7405 0.0021 28 1 -0.4850 -0.8401 -0.0004 29 1 0.4613 -2.5345 -0.7487 30 1 1.3967 -2.5353 2.2126 31 1 -0.2730 -2.8591 1.5695 32 1 1.3897 -6.5618 3.8787 33 1 -0.1672 -5.9848 4.6818 34 1 -0.2613 -8.4967 1.0431 35 1 0.9166 -8.8530 2.3821 36 1 -2.9692 -10.1057 2.4266 37 1 -1.9271 -9.7274 1.0340 38 1 -0.9263 -14.3809 3.3388 39 1 0.6213 -13.8523 1.2891 40 1 -2.2767 -7.6669 4.0319 41 1 -2.5750 -7.6359 2.2391 42 1 2.1759 -4.2752 -0.9476 43 1 3.1590 -3.5536 0.4001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277583781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:04 Heat of formation + Delta-G solvation = 70.689061 kcal Electronic energy + Delta-G solvation = -25545.056599 eV Core-core repulsion = 21787.661844 eV Total energy + Delta-G solvation = -3757.394756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.30028 -41.78841 -40.68711 -38.77233 -36.26846 -35.71887 -34.84603 -32.46364 -30.83159 -28.94989 -27.32425 -27.12343 -26.83904 -24.59649 -24.50510 -23.53514 -22.30357 -21.94790 -20.15163 -19.39904 -19.02458 -18.51843 -18.14082 -17.80873 -16.98989 -16.67343 -16.62712 -16.46297 -15.87176 -15.68057 -15.58216 -15.49615 -14.62771 -14.39984 -14.11968 -14.11451 -13.87273 -13.56289 -13.47850 -13.28950 -13.09936 -12.78912 -12.64694 -12.47641 -12.37918 -11.88621 -11.79709 -11.63080 -11.50837 -11.43797 -11.30812 -11.03851 -10.55367 -10.45321 -10.02141 -9.84606 -9.62636 -8.60743 -6.34068 0.43807 1.42932 1.61489 1.63732 1.67350 1.80086 1.84266 1.85607 2.55004 2.61673 2.94452 3.02184 3.17367 3.18089 3.42079 3.66148 3.79602 3.91382 4.01844 4.08517 4.15951 4.18817 4.26956 4.28680 4.40858 4.43162 4.44944 4.52479 4.58567 4.68968 4.73246 4.75501 4.77424 4.78759 4.89585 4.91573 4.93145 5.03831 5.10939 5.31805 5.39432 5.79940 6.01120 6.20089 6.59487 6.73075 6.81261 7.11283 7.45135 8.79927 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.036369 B = 0.002199 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.700505 B =12727.371810 C =13061.802226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.021 4.021 3 Si 1.115 2.885 4 H -0.279 1.279 5 H -0.271 1.271 6 H -0.285 1.285 7 C -0.603 4.603 8 H 0.054 0.946 9 C 0.000 4.000 10 C 0.115 3.885 11 N -0.638 5.638 12 C 0.548 3.452 13 O -0.589 6.589 14 C -0.176 4.176 15 H 0.139 0.861 16 C -0.098 4.098 17 C -0.137 4.137 18 C 0.060 3.940 19 N -0.482 5.482 20 C 0.114 3.886 21 C 0.186 3.814 22 N -0.499 5.499 23 C -0.064 4.064 24 C -0.072 4.072 25 O -0.221 6.221 26 C 0.062 3.938 27 C 0.115 3.885 28 H 0.261 0.739 29 H 0.032 0.968 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.135 0.865 37 H 0.083 0.917 38 H 0.210 0.790 39 H 0.253 0.747 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.245 -19.905 7.260 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.221 4.221 3 Si 0.937 3.063 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.211 1.211 7 C -0.641 4.641 8 H 0.072 0.928 9 C -0.019 4.019 10 C -0.007 4.007 11 N -0.371 5.371 12 C 0.340 3.660 13 O -0.471 6.471 14 C -0.197 4.197 15 H 0.156 0.844 16 C -0.135 4.135 17 C -0.138 4.138 18 C -0.068 4.068 19 N -0.206 5.206 20 C -0.014 4.014 21 C -0.021 4.021 22 N -0.230 5.230 23 C -0.201 4.201 24 C -0.142 4.142 25 O -0.107 6.107 26 C -0.065 4.065 27 C -0.007 4.007 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.158 0.842 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.153 0.847 37 H 0.101 0.899 38 H 0.227 0.773 39 H 0.269 0.731 40 H 0.138 0.862 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.524 -19.267 8.037 21.361 hybrid contribution 0.743 -1.576 -1.616 2.377 sum -3.780 -20.843 6.421 22.135 Atomic orbital electron populations 1.70899 1.07732 1.30339 1.47588 1.27125 0.96546 1.06047 0.92367 0.82928 0.74300 0.71585 0.77447 1.20484 1.19571 1.21053 1.22122 0.94411 0.91818 1.55774 0.92776 1.20600 0.94890 0.93193 0.93194 1.23546 0.99623 0.77350 1.00183 1.50321 1.41897 1.05010 1.39829 1.19993 0.82671 0.80743 0.82608 1.90611 1.57691 1.40883 1.57909 1.22095 1.01073 0.99347 0.97199 0.84364 1.22894 1.00232 0.98201 0.92141 1.22650 0.99196 0.89083 1.02885 1.23350 0.96573 0.90693 0.96194 1.68553 1.07561 1.08286 1.36201 1.21126 0.98171 0.82992 0.99150 1.26385 0.89835 0.98237 0.87634 1.70414 1.26858 1.01574 1.24149 1.23915 0.96762 0.99584 0.99877 1.25885 1.04348 0.84081 0.99846 1.84485 1.47268 1.28262 1.50684 1.23643 0.92834 0.85191 1.04850 1.23217 0.94407 0.92007 0.91109 0.92852 0.95008 0.90111 0.91115 0.89168 0.84159 0.91156 0.91304 0.84721 0.89885 0.77316 0.73118 0.86159 0.88408 0.92111 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.64 13.65 21.45 0.29 -51.35 16 2 C -0.02 -1.09 5.46 84.65 0.46 -0.63 16 3 Si 1.11 46.27 29.90 68.60 2.05 48.32 16 4 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.60 -30.67 8.77 25.60 0.22 -30.45 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 9 C 0.00 0.02 3.09 -10.88 -0.03 -0.01 16 10 C 0.12 4.59 8.13 86.48 0.70 5.29 16 11 N -0.64 -24.96 3.61 -836.80 -3.02 -27.98 16 12 C 0.55 20.27 7.84 87.66 0.69 20.96 16 13 O -0.59 -24.96 15.86 -3.03 -0.05 -25.01 16 14 C -0.18 -4.77 5.94 -11.71 -0.07 -4.84 16 15 H 0.14 3.34 8.14 -2.39 -0.02 3.32 16 16 C -0.10 -2.18 10.24 30.47 0.31 -1.87 16 17 C -0.14 -3.20 3.04 -52.35 -0.16 -3.36 16 18 C 0.06 1.59 6.38 86.17 0.55 2.14 16 19 N -0.48 -10.50 6.14 -922.84 -5.67 -16.17 16 20 C 0.11 2.20 5.42 85.56 0.46 2.66 16 21 C 0.19 4.43 7.90 88.34 0.70 5.12 16 22 N -0.50 -12.28 11.29 -303.82 -3.43 -15.71 16 23 C -0.06 -1.17 11.89 83.40 0.99 -0.17 16 24 C -0.07 -1.19 12.18 66.93 0.81 -0.37 16 25 O -0.22 -5.20 10.78 -3.79 -0.04 -5.24 16 26 C 0.06 1.06 7.96 86.17 0.69 1.75 16 27 C 0.11 4.78 8.39 86.48 0.73 5.50 16 28 H 0.26 14.45 7.04 -92.71 -0.65 13.80 16 29 H 0.03 1.60 7.61 -2.38 -0.02 1.58 16 30 H 0.08 3.20 8.09 -2.39 -0.02 3.18 16 31 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.07 2.01 7.35 -2.39 -0.02 2.00 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.13 2.01 8.08 -2.39 -0.02 1.99 16 37 H 0.08 1.45 7.38 -2.39 -0.02 1.43 16 38 H 0.21 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.25 1.69 8.06 -2.91 -0.02 1.66 16 40 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.10 1.36 7.93 -2.39 -0.02 1.34 16 42 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.08 3.23 8.09 -2.38 -0.02 3.21 16 Total: -1.00 -69.27 367.68 -1.67 -70.94 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 1.13 Total: 20.47 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 7.06 Total: 1.73 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -11.82 Total: -111.21 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.09 Total: -30.25 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.05 Total: 48.32 kcal Total: -69.27 -1.67 -70.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277583781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.626 kcal (2) G-P(sol) polarization free energy of solvation -69.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds