Wall clock time and date at job start Tue Mar 31 2020 11:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38227 * 120.41614 * 2 1 4 4 N 1.31852 * 120.76217 * 180.02562 * 3 2 1 5 5 C 1.31885 * 121.72923 * 359.69627 * 4 3 2 6 6 C 1.38187 * 120.75850 * 0.59499 * 5 4 3 7 7 C 1.50702 * 120.41479 * 179.70278 * 6 5 4 8 8 N 1.46505 * 109.46910 * 269.71880 * 7 6 5 9 9 C 1.34768 * 120.00082 * 179.97438 * 8 7 6 10 10 O 1.21345 * 120.00101 * 0.02562 * 9 8 7 11 11 C 1.49453 * 120.00060 * 179.97438 * 9 8 7 12 12 O 1.21347 * 119.99738 * 5.09600 * 11 9 8 13 13 N 1.34782 * 120.00141 * 185.08842 * 11 9 8 14 14 C 1.46497 * 119.99894 * 185.03768 * 13 11 9 15 15 C 1.53005 * 109.46780 * 184.77988 * 14 13 11 16 16 C 1.50694 * 115.55017 * 294.81935 * 15 14 13 17 17 H 1.08003 * 119.99667 * 95.20821 * 16 15 14 18 18 C 1.37878 * 120.00569 * 274.92361 * 16 15 14 19 19 N 1.31513 * 119.99163 * 355.42361 * 18 16 15 20 20 Si 1.86794 * 120.00501 * 175.42139 * 18 16 15 21 21 H 1.48506 * 109.47138 * 59.99993 * 20 18 16 22 22 H 1.48497 * 109.47408 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47174 * 300.00591 * 20 18 16 24 24 C 1.53002 * 117.49623 * 80.49302 * 15 14 13 25 25 C 1.53002 * 117.49534 * 149.14978 * 15 14 13 26 26 C 1.38624 * 120.41969 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.46915 * 269.97134 * 1 2 3 28 28 H 1.08996 * 109.47689 * 29.98050 * 1 2 3 29 29 H 1.09008 * 109.46953 * 149.98050 * 1 2 3 30 30 H 1.08001 * 119.61477 * 359.97438 * 3 2 1 31 31 H 1.07993 * 119.62198 * 180.31282 * 5 4 3 32 32 H 1.08996 * 109.47368 * 149.72327 * 7 6 5 33 33 H 1.08999 * 109.47544 * 29.71507 * 7 6 5 34 34 H 0.97003 * 120.00007 * 0.02562 * 8 7 6 35 35 H 0.97004 * 119.99403 * 5.04265 * 13 11 9 36 36 H 1.09003 * 109.46616 * 64.78885 * 14 13 11 37 37 H 1.08993 * 109.47729 * 304.78355 * 14 13 11 38 38 H 0.97009 * 119.99393 * 184.99658 * 19 18 16 39 39 H 1.08995 * 117.49715 * 214.99983 * 24 15 14 40 40 H 1.09003 * 117.49834 * 0.02562 * 24 15 14 41 41 H 1.09005 * 117.49794 * 359.97438 * 25 15 14 42 42 H 1.08999 * 117.49412 * 144.97246 * 25 15 14 43 43 H 1.07997 * 120.79522 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5253 1.2000 -0.0005 5 6 4.2257 0.0825 0.0049 6 6 3.5948 -1.1470 -0.0010 7 6 4.4028 -2.4191 -0.0014 8 7 4.6642 -2.8310 -1.3829 9 6 5.3749 -3.9492 -1.6296 10 8 5.7980 -4.6150 -0.7076 11 6 5.6410 -4.3697 -3.0389 12 8 5.2980 -3.6576 -3.9596 13 7 6.2621 -5.5398 -3.2871 14 6 6.6219 -5.9012 -4.6605 15 6 7.2016 -7.3170 -4.6800 16 6 8.5069 -7.4951 -3.9483 17 1 8.5096 -7.8425 -2.9257 18 6 9.6980 -7.2201 -4.5861 19 7 9.7010 -6.8893 -5.8590 20 14 11.3071 -7.3172 -3.6424 21 1 11.4908 -8.6942 -3.1176 22 1 12.4336 -6.9778 -4.5485 23 1 11.2759 -6.3563 -2.5106 24 6 6.2137 -8.4852 -4.6571 25 6 6.9787 -8.1543 -5.9411 26 6 2.2089 -1.1954 -0.0005 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3634 0.8901 -0.5135 29 1 -0.3633 -0.8899 -0.5142 30 1 1.6674 2.1276 -0.0004 31 1 5.3046 0.1287 0.0094 32 1 3.8465 -3.2031 0.5123 33 1 5.3491 -2.2488 0.5121 34 1 4.3263 -2.2986 -2.1200 35 1 6.4708 -6.1427 -2.5563 36 1 7.3653 -5.1990 -5.0379 37 1 5.7335 -5.8636 -5.2908 38 1 10.5423 -6.7667 -6.3262 39 1 6.5080 -9.3825 -4.1128 40 1 5.1509 -8.2450 -4.6286 41 1 6.4186 -7.6965 -6.7566 42 1 7.7763 -8.8335 -6.2417 43 1 1.6889 -2.1419 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323525828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:22 Heat of formation + Delta-G solvation = -18.714691 kcal Electronic energy + Delta-G solvation = -25174.669320 eV Core-core repulsion = 21413.397727 eV Total energy + Delta-G solvation = -3761.271593 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83816 -40.14791 -38.25454 -36.73852 -35.63562 -34.00505 -33.47765 -32.25444 -31.98138 -27.84545 -27.63682 -26.58812 -25.38453 -23.68663 -22.96791 -21.49849 -21.17007 -20.00169 -19.54900 -18.15880 -17.35463 -17.08801 -16.66067 -16.18096 -15.61356 -15.45813 -14.93294 -14.70557 -14.60574 -14.29323 -14.18594 -13.78462 -13.51469 -13.44710 -13.29229 -13.10267 -12.93035 -12.77321 -12.67881 -11.90699 -11.84621 -11.64443 -11.38782 -10.99758 -10.95521 -10.55278 -10.26829 -10.16312 -9.84355 -9.64933 -9.40622 -9.33776 -9.15085 -9.10132 -8.54482 -8.41373 -8.20007 -6.09799 -4.19673 0.59172 0.85074 1.72955 2.65526 3.28085 3.33325 3.36403 3.40386 3.54933 3.97773 4.05640 4.26015 4.32179 4.35135 4.54721 4.57712 4.72872 4.87854 4.97381 5.12835 5.17692 5.25942 5.32038 5.33364 5.42486 5.56612 5.78220 5.83707 5.94124 6.09986 6.26753 6.28570 6.38170 6.45699 6.64784 6.73082 6.95431 7.06986 7.15287 7.31103 7.48259 7.57811 7.78204 7.80480 8.09961 8.30158 8.48625 8.82361 9.48103 10.97209 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021030 B = 0.002462 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.120885 B =11369.701502 C =11985.573079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.140 4.140 3 C 0.104 3.896 4 N -0.481 5.481 5 C 0.114 3.886 6 C -0.156 4.156 7 C 0.165 3.835 8 N -0.706 5.706 9 C 0.510 3.490 10 O -0.516 6.516 11 C 0.495 3.505 12 O -0.540 6.540 13 N -0.665 5.665 14 C 0.159 3.841 15 C 0.021 3.979 16 C -0.502 4.502 17 H 0.061 0.939 18 C 0.073 3.927 19 N -0.876 5.876 20 Si 0.891 3.109 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.210 4.210 25 C -0.139 4.139 26 C -0.057 4.057 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.413 0.587 35 H 0.414 0.586 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.262 0.738 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.569 12.018 11.119 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.142 4.142 3 C -0.053 4.053 4 N -0.189 5.189 5 C -0.043 4.043 6 C -0.158 4.158 7 C 0.041 3.959 8 N -0.360 5.360 9 C 0.291 3.709 10 O -0.391 6.391 11 C 0.275 3.725 12 O -0.419 6.419 13 N -0.315 5.315 14 C 0.037 3.963 15 C 0.020 3.980 16 C -0.539 4.539 17 H 0.080 0.920 18 C -0.131 4.131 19 N -0.512 5.512 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.247 4.247 25 C -0.177 4.177 26 C -0.083 4.083 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.173 0.827 31 H 0.176 0.824 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.249 0.751 35 H 0.250 0.750 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.880 12.933 10.971 23.234 hybrid contribution 0.498 -0.867 0.384 1.071 sum -15.382 12.067 11.355 22.609 Atomic orbital electron populations 1.20739 0.89923 1.03420 1.02734 1.20976 0.97826 0.94017 1.01410 1.22777 0.89999 0.97611 0.94932 1.67754 1.08328 1.31034 1.11748 1.22788 1.00610 0.86927 0.94000 1.20881 0.94648 0.96295 1.03974 1.20166 0.99552 0.92659 0.83496 1.45801 1.54954 1.26446 1.08832 1.20527 0.78727 0.81252 0.90424 1.90766 1.49335 1.53107 1.45871 1.19887 0.80771 0.83402 0.88483 1.90720 1.52282 1.53485 1.45441 1.45895 1.54895 1.18188 1.12507 1.21224 0.97559 0.98378 0.79179 1.19025 0.94052 0.85951 0.98933 1.20344 0.88647 1.46172 0.98762 0.92037 1.24990 0.99035 0.94134 0.94919 1.69980 1.26744 1.45905 1.08534 0.86670 0.82882 0.78658 0.79908 1.20201 1.21273 1.20013 1.23035 0.95564 1.02039 1.04078 1.22477 1.00892 1.04170 0.90205 1.21491 0.93219 0.98612 0.94967 0.90768 0.90998 0.91094 0.82684 0.82401 0.89875 0.89654 0.75096 0.74981 0.90765 0.93385 0.92774 0.90206 0.91660 0.91735 0.89373 0.84469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.04 36.01 0.36 -0.14 16 2 C -0.14 -1.00 5.90 -104.48 -0.62 -1.62 16 3 C 0.10 0.85 10.86 -17.55 -0.19 0.66 16 4 N -0.48 -4.93 10.36 -13.25 -0.14 -5.06 16 5 C 0.11 1.07 10.86 -17.55 -0.19 0.88 16 6 C -0.16 -1.34 5.27 -104.48 -0.55 -1.89 16 7 C 0.16 1.57 5.83 -5.19 -0.03 1.54 16 8 N -0.71 -8.51 5.54 -61.91 -0.34 -8.85 16 9 C 0.51 8.04 7.89 -11.59 -0.09 7.94 16 10 O -0.52 -9.13 16.50 5.50 0.09 -9.04 16 11 C 0.50 9.12 7.88 -11.58 -0.09 9.03 16 12 O -0.54 -10.83 16.47 5.50 0.09 -10.74 16 13 N -0.67 -13.13 5.46 -60.73 -0.33 -13.46 16 14 C 0.16 3.50 5.53 -4.04 -0.02 3.48 16 15 C 0.02 0.49 1.47 -155.66 -0.23 0.26 16 16 C -0.50 -12.93 8.59 -34.44 -0.30 -13.22 16 17 H 0.06 1.58 7.82 -52.48 -0.41 1.16 16 18 C 0.07 1.94 5.43 -17.82 -0.10 1.85 16 19 N -0.88 -24.00 12.65 55.43 0.70 -23.30 16 20 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.21 -4.33 9.96 -26.69 -0.27 -4.60 16 25 C -0.14 -3.13 9.14 -26.69 -0.24 -3.37 16 26 C -0.06 -0.43 9.55 -39.28 -0.37 -0.81 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 29 H 0.07 0.30 8.10 -51.92 -0.42 -0.12 16 30 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.41 4.78 7.95 -40.82 -0.32 4.45 16 35 H 0.41 8.07 7.84 -40.82 -0.32 7.75 16 36 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 37 H 0.05 1.02 8.05 -51.93 -0.42 0.60 16 38 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 39 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 43 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -30.38 377.40 -8.29 -38.67 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -6.09 Total: 10.41 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.93 Total: -0.02 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.11 Total: -50.67 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: 0.18 Total: -19.78 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.38 -8.29 -38.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323525828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.951 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds