Wall clock time and date at job start Tue Mar 31 2020 11:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38227 * 120.41614 * 2 1 4 4 N 1.31852 * 120.76217 * 180.02562 * 3 2 1 5 5 C 1.31885 * 121.72923 * 359.69627 * 4 3 2 6 6 C 1.38187 * 120.75850 * 0.59499 * 5 4 3 7 7 C 1.50702 * 120.41479 * 179.70278 * 6 5 4 8 8 N 1.46505 * 109.46910 * 269.71880 * 7 6 5 9 9 C 1.34768 * 120.00082 * 179.97438 * 8 7 6 10 10 O 1.21345 * 120.00101 * 0.02562 * 9 8 7 11 11 C 1.49453 * 120.00060 * 179.97438 * 9 8 7 12 12 O 1.21347 * 119.99738 * 5.09600 * 11 9 8 13 13 N 1.34782 * 120.00141 * 185.08842 * 11 9 8 14 14 C 1.46497 * 119.99894 * 185.03768 * 13 11 9 15 15 C 1.53005 * 109.46780 * 184.77988 * 14 13 11 16 16 C 1.50694 * 115.55017 * 294.81935 * 15 14 13 17 17 H 1.08003 * 119.99667 * 95.20821 * 16 15 14 18 18 C 1.37878 * 120.00569 * 274.92361 * 16 15 14 19 19 N 1.31513 * 119.99163 * 355.42361 * 18 16 15 20 20 Si 1.86794 * 120.00501 * 175.42139 * 18 16 15 21 21 H 1.48506 * 109.47138 * 59.99993 * 20 18 16 22 22 H 1.48497 * 109.47408 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47174 * 300.00591 * 20 18 16 24 24 C 1.53002 * 117.49623 * 80.49302 * 15 14 13 25 25 C 1.53002 * 117.49534 * 149.14978 * 15 14 13 26 26 C 1.38624 * 120.41969 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.46915 * 269.97134 * 1 2 3 28 28 H 1.08996 * 109.47689 * 29.98050 * 1 2 3 29 29 H 1.09008 * 109.46953 * 149.98050 * 1 2 3 30 30 H 1.08001 * 119.61477 * 359.97438 * 3 2 1 31 31 H 1.07993 * 119.62198 * 180.31282 * 5 4 3 32 32 H 1.08996 * 109.47368 * 149.72327 * 7 6 5 33 33 H 1.08999 * 109.47544 * 29.71507 * 7 6 5 34 34 H 0.97003 * 120.00007 * 0.02562 * 8 7 6 35 35 H 0.97004 * 119.99403 * 5.04265 * 13 11 9 36 36 H 1.09003 * 109.46616 * 64.78885 * 14 13 11 37 37 H 1.08993 * 109.47729 * 304.78355 * 14 13 11 38 38 H 0.97009 * 119.99393 * 184.99658 * 19 18 16 39 39 H 1.08995 * 117.49715 * 214.99983 * 24 15 14 40 40 H 1.09003 * 117.49834 * 0.02562 * 24 15 14 41 41 H 1.09005 * 117.49794 * 359.97438 * 25 15 14 42 42 H 1.08999 * 117.49412 * 144.97246 * 25 15 14 43 43 H 1.07997 * 120.79522 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5253 1.2000 -0.0005 5 6 4.2257 0.0825 0.0049 6 6 3.5948 -1.1470 -0.0010 7 6 4.4028 -2.4191 -0.0014 8 7 4.6642 -2.8310 -1.3829 9 6 5.3749 -3.9492 -1.6296 10 8 5.7980 -4.6150 -0.7076 11 6 5.6410 -4.3697 -3.0389 12 8 5.2980 -3.6576 -3.9596 13 7 6.2621 -5.5398 -3.2871 14 6 6.6219 -5.9012 -4.6605 15 6 7.2016 -7.3170 -4.6800 16 6 8.5069 -7.4951 -3.9483 17 1 8.5096 -7.8425 -2.9257 18 6 9.6980 -7.2201 -4.5861 19 7 9.7010 -6.8893 -5.8590 20 14 11.3071 -7.3172 -3.6424 21 1 11.4908 -8.6942 -3.1176 22 1 12.4336 -6.9778 -4.5485 23 1 11.2759 -6.3563 -2.5106 24 6 6.2137 -8.4852 -4.6571 25 6 6.9787 -8.1543 -5.9411 26 6 2.2089 -1.1954 -0.0005 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3634 0.8901 -0.5135 29 1 -0.3633 -0.8899 -0.5142 30 1 1.6674 2.1276 -0.0004 31 1 5.3046 0.1287 0.0094 32 1 3.8465 -3.2031 0.5123 33 1 5.3491 -2.2488 0.5121 34 1 4.3263 -2.2986 -2.1200 35 1 6.4708 -6.1427 -2.5563 36 1 7.3653 -5.1990 -5.0379 37 1 5.7335 -5.8636 -5.2908 38 1 10.5423 -6.7667 -6.3262 39 1 6.5080 -9.3825 -4.1128 40 1 5.1509 -8.2450 -4.6286 41 1 6.4186 -7.6965 -6.7566 42 1 7.7763 -8.8335 -6.2417 43 1 1.6889 -2.1419 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323525828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:22 Heat of formation + Delta-G solvation = -39.007180 kcal Electronic energy + Delta-G solvation = -25175.549269 eV Core-core repulsion = 21413.397727 eV Total energy + Delta-G solvation = -3762.151542 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78177 -41.20904 -39.68018 -38.46582 -36.66108 -35.02995 -34.54953 -33.96408 -33.11921 -29.05035 -28.22465 -27.91469 -27.20917 -24.64578 -23.94502 -22.91220 -22.18714 -21.44735 -21.20300 -19.60991 -18.14446 -17.92033 -17.85667 -17.75774 -16.98157 -16.68319 -16.56294 -16.28119 -15.73708 -15.33163 -15.23821 -14.99425 -14.75043 -14.41635 -14.16463 -14.01491 -13.92792 -13.62229 -13.57112 -13.48304 -13.23121 -12.95887 -12.82435 -12.80193 -12.42709 -12.39517 -12.01301 -11.43556 -10.98133 -10.96240 -10.62867 -10.52554 -10.45237 -10.33733 -10.12961 -9.96624 -9.85233 -8.10755 -6.24434 -0.05494 0.24304 0.36085 1.42186 1.42276 1.45034 1.50552 2.15539 2.41678 2.61685 2.89309 3.16868 3.33993 3.43130 3.59962 3.64893 3.76609 3.96852 3.99733 4.19930 4.21196 4.39524 4.51593 4.58038 4.62583 4.68790 4.73142 4.84243 4.86761 4.91827 5.02397 5.05094 5.16387 5.22581 5.28539 5.28717 5.34474 5.52937 5.68491 5.70952 5.77098 5.95199 6.35574 6.42616 6.73849 6.82728 6.94848 6.98852 7.45298 8.95625 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021030 B = 0.002462 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.120885 B =11369.701502 C =11985.573079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.138 4.138 3 C 0.094 3.906 4 N -0.510 5.510 5 C 0.099 3.901 6 C -0.157 4.157 7 C 0.167 3.833 8 N -0.686 5.686 9 C 0.518 3.482 10 O -0.537 6.537 11 C 0.495 3.505 12 O -0.558 6.558 13 N -0.669 5.669 14 C 0.175 3.825 15 C -0.003 4.003 16 C -0.508 4.508 17 H 0.059 0.941 18 C 0.028 3.972 19 N -0.904 5.904 20 Si 0.946 3.054 21 H -0.270 1.270 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.180 4.180 25 C -0.146 4.146 26 C -0.061 4.061 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.176 0.824 31 H 0.162 0.838 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.417 0.583 35 H 0.416 0.584 36 H 0.039 0.961 37 H 0.056 0.944 38 H 0.260 0.740 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.390 12.332 12.444 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.140 4.140 3 C -0.063 4.063 4 N -0.217 5.217 5 C -0.058 4.058 6 C -0.160 4.160 7 C 0.044 3.956 8 N -0.339 5.339 9 C 0.298 3.702 10 O -0.413 6.413 11 C 0.276 3.724 12 O -0.437 6.437 13 N -0.318 5.318 14 C 0.051 3.949 15 C -0.004 4.004 16 C -0.546 4.546 17 H 0.077 0.923 18 C -0.173 4.173 19 N -0.541 5.541 20 Si 0.772 3.228 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.217 4.217 25 C -0.185 4.185 26 C -0.087 4.087 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.193 0.807 31 H 0.179 0.821 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.254 0.746 35 H 0.252 0.748 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.729 13.270 12.318 25.340 hybrid contribution 0.959 -0.886 -0.007 1.306 sum -16.770 12.384 12.311 24.210 Atomic orbital electron populations 1.20801 0.87875 1.04279 1.03673 1.21269 0.99265 0.93384 1.00041 1.23217 0.89578 0.99065 0.94405 1.67749 1.09550 1.31582 1.12862 1.22919 1.01026 0.87224 0.94582 1.20739 0.95045 0.95372 1.04801 1.20303 1.00120 0.93430 0.81712 1.45785 1.53005 1.24813 1.10330 1.19933 0.79442 0.82184 0.88641 1.90766 1.50712 1.54124 1.45742 1.20359 0.79739 0.82562 0.89735 1.90706 1.52794 1.53751 1.46490 1.45797 1.55456 1.18977 1.11590 1.20830 0.96736 0.96814 0.80501 1.19066 0.94390 0.87277 0.99626 1.20632 0.89928 1.45288 0.98765 0.92326 1.25640 1.01815 0.94285 0.95602 1.70083 1.27086 1.47259 1.09657 0.85809 0.79696 0.78700 0.78613 1.19530 1.21357 1.20085 1.23023 0.96308 1.00571 1.01800 1.22399 1.01040 1.04016 0.91004 1.21769 0.92900 0.99695 0.94319 0.89663 0.89901 0.90521 0.80662 0.82079 0.88779 0.89397 0.74638 0.74789 0.94226 0.92624 0.93073 0.89903 0.89126 0.90668 0.91625 0.82791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.04 71.24 0.72 0.04 16 2 C -0.14 -1.66 5.90 -19.77 -0.12 -1.78 16 3 C 0.09 1.38 10.86 84.69 0.92 2.30 16 4 N -0.51 -10.02 10.36 -195.85 -2.03 -12.05 16 5 C 0.10 1.79 10.86 84.67 0.92 2.71 16 6 C -0.16 -2.48 5.27 -19.77 -0.10 -2.58 16 7 C 0.17 2.90 5.83 85.63 0.50 3.40 16 8 N -0.69 -15.54 5.54 -468.14 -2.59 -18.13 16 9 C 0.52 15.75 7.89 87.27 0.69 16.44 16 10 O -0.54 -18.37 16.50 -3.23 -0.05 -18.43 16 11 C 0.50 17.96 7.88 87.27 0.69 18.64 16 12 O -0.56 -22.08 16.47 -3.24 -0.05 -22.14 16 13 N -0.67 -26.15 5.46 -464.41 -2.54 -28.68 16 14 C 0.17 7.70 5.53 86.38 0.48 8.18 16 15 C 0.00 -0.13 1.47 -52.93 -0.08 -0.21 16 16 C -0.51 -26.24 8.59 25.60 0.22 -26.02 16 17 H 0.06 2.99 7.82 -2.91 -0.02 2.96 16 18 C 0.03 1.47 5.43 84.66 0.46 1.93 16 19 N -0.90 -50.35 12.65 21.45 0.27 -50.08 16 20 Si 0.95 42.76 29.54 68.60 2.03 44.78 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 C -0.18 -7.12 9.96 30.62 0.30 -6.82 16 25 C -0.15 -6.54 9.14 30.62 0.28 -6.26 16 26 C -0.06 -0.80 9.55 22.47 0.21 -0.58 16 27 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.08 0.35 8.09 -2.39 -0.02 0.33 16 29 H 0.08 0.42 8.10 -2.38 -0.02 0.40 16 30 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.09 1.50 8.10 -2.39 -0.02 1.48 16 33 H 0.09 1.54 8.09 -2.39 -0.02 1.52 16 34 H 0.42 9.05 7.95 -92.71 -0.74 8.31 16 35 H 0.42 15.99 7.84 -92.71 -0.73 15.27 16 36 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.06 2.34 8.05 -2.39 -0.02 2.32 16 38 H 0.26 14.02 8.32 -92.70 -0.77 13.25 16 39 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16 42 H 0.07 3.20 8.14 -2.39 -0.02 3.19 16 43 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -64.63 377.40 0.70 -63.93 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -0.42 Total: 31.38 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 6.09 Total: 9.41 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -6.89 Total: -108.94 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.11 Total: -40.56 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -64.63 0.70 -63.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323525828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.926 kcal (2) G-P(sol) polarization free energy of solvation -64.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds