Wall clock time and date at job start Tue Mar 31 2020 11:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38835 * 120.34655 * 2 1 4 4 C 1.38355 * 118.49761 * 180.02562 * 3 2 1 5 5 C 1.39083 * 119.09871 * 0.02562 * 4 3 2 6 6 N 1.39242 * 119.69722 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99973 * 175.47118 * 6 5 4 8 8 O 1.21352 * 119.99900 * 4.56212 * 7 6 5 9 9 C 1.49370 * 119.99951 * 184.57355 * 7 6 5 10 10 O 1.21359 * 120.00348 * 354.01517 * 9 7 6 11 11 N 1.34775 * 119.99583 * 174.02311 * 9 7 6 12 12 C 1.46932 * 120.62560 * 172.42506 * 11 9 7 13 13 C 1.53194 * 108.88977 * 233.66796 * 12 11 9 14 14 C 1.53040 * 109.31154 * 305.29571 * 13 12 11 15 15 C 1.50705 * 109.45682 * 181.37142 * 14 13 12 16 16 H 1.08002 * 120.00058 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99926 * 179.97438 * 15 14 13 18 18 N 1.31521 * 120.00072 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00214 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46951 * 60.00370 * 19 17 15 21 21 H 1.48495 * 109.47234 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47030 * 300.00262 * 19 17 15 23 23 C 1.53038 * 109.54123 * 61.36639 * 14 13 12 24 24 C 1.47199 * 120.81802 * 352.55446 * 11 9 7 25 25 N 1.32372 * 120.60003 * 0.24884 * 5 4 3 26 26 C 1.31916 * 121.63727 * 359.48148 * 25 5 4 27 27 H 1.09003 * 109.47120 * 89.99470 * 1 2 3 28 28 H 1.09003 * 109.47608 * 209.99747 * 1 2 3 29 29 H 1.09005 * 109.47297 * 329.99885 * 1 2 3 30 30 H 1.07999 * 120.74860 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.45015 * 180.02562 * 4 3 2 32 32 H 0.96999 * 120.00673 * 355.46837 * 6 5 4 33 33 H 1.09003 * 109.58506 * 113.81630 * 12 11 9 34 34 H 1.08996 * 109.59043 * 353.52724 * 12 11 9 35 35 H 1.09000 * 109.49645 * 65.24867 * 13 12 11 36 36 H 1.09000 * 109.49421 * 185.31271 * 13 12 11 37 37 H 1.08994 * 109.46287 * 301.34027 * 14 13 12 38 38 H 0.96998 * 119.99928 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.49666 * 58.58278 * 23 14 13 40 40 H 1.08996 * 109.49886 * 178.68219 * 23 14 13 41 41 H 1.09002 * 109.53219 * 6.54236 * 24 11 9 42 42 H 1.08999 * 109.68255 * 246.23979 * 24 11 9 43 43 H 1.07996 * 119.57540 * 180.24360 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2084 1.1981 0.0000 4 6 3.5912 1.1535 -0.0005 5 6 4.2280 -0.0830 -0.0016 6 7 5.6192 -0.1424 -0.0027 7 6 6.2428 -1.3338 0.0884 8 8 5.5945 -2.3596 0.0880 9 6 7.7320 -1.3914 0.1902 10 8 8.3874 -0.3758 0.0819 11 7 8.3477 -2.5714 0.4023 12 6 9.8122 -2.6733 0.3403 13 6 10.1908 -3.7850 -0.6433 14 6 9.4900 -5.0827 -0.2345 15 6 9.8867 -6.1869 -1.1803 16 1 10.5697 -5.9835 -1.9918 17 6 9.3777 -7.4569 -1.0096 18 7 8.5455 -7.7045 -0.0217 19 14 9.8688 -8.8254 -2.1823 20 1 11.3402 -9.0186 -2.1291 21 1 9.1891 -10.0847 -1.7859 22 1 9.4671 -8.4607 -3.5647 23 6 7.9735 -4.8848 -0.2897 24 6 7.5698 -3.7855 0.6979 25 7 3.5236 -1.2037 -0.0071 26 6 2.2045 -1.1920 -0.0015 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6864 2.1436 0.0004 31 1 4.1683 2.0664 -0.0001 32 1 6.1395 0.6735 -0.0691 33 1 10.2041 -2.9112 1.3292 34 1 10.2303 -1.7261 -0.0003 35 1 9.8776 -3.5035 -1.6487 36 1 11.2705 -3.9332 -0.6267 37 1 9.7846 -5.3504 0.7801 38 1 8.1872 -8.5979 0.0981 39 1 7.6811 -4.5930 -1.2984 40 1 7.4750 -5.8162 -0.0211 41 1 6.5062 -3.5717 0.5919 42 1 7.7764 -4.1151 1.7161 43 1 1.6631 -2.1264 -0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337911282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:08 Heat of formation + Delta-G solvation = -6.129113 kcal Electronic energy + Delta-G solvation = -26263.303499 eV Core-core repulsion = 22502.577657 eV Total energy + Delta-G solvation = -3760.725842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23947 -40.11184 -38.38700 -37.05068 -35.46327 -33.47501 -33.12592 -31.68415 -31.20933 -30.03268 -27.54046 -26.43100 -24.83370 -23.99764 -22.66912 -22.34050 -21.61814 -20.30985 -19.03818 -18.12029 -17.43857 -16.61900 -16.21787 -16.04412 -15.82504 -15.47174 -14.94458 -14.72532 -14.50897 -14.43869 -14.14903 -13.64955 -13.28240 -13.13562 -12.96760 -12.90161 -12.75303 -12.71852 -12.27781 -12.05091 -11.71243 -11.39184 -10.99043 -10.89507 -10.76168 -10.59871 -10.34639 -10.06276 -10.03630 -9.81355 -9.53923 -9.19439 -9.12023 -8.48413 -8.37825 -8.29177 -8.09906 -5.97928 -4.04518 0.75396 1.08071 1.69924 2.28152 3.30108 3.32950 3.37763 3.40310 3.52046 3.72255 4.22668 4.44513 4.46095 4.56447 4.67269 4.75080 4.85268 5.15291 5.29911 5.31686 5.51496 5.58021 5.63319 5.66386 5.82919 5.88715 5.98364 6.04991 6.08631 6.24204 6.39305 6.47761 6.62204 6.71560 6.75531 6.88378 7.02501 7.19117 7.31477 7.66866 7.70506 7.79285 7.97060 8.03132 8.10681 8.19491 8.44660 8.98285 9.60143 11.07487 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.003050 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.340871 B = 9177.066309 C =10435.096888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.174 4.174 3 C -0.049 4.049 4 C -0.200 4.200 5 C 0.356 3.644 6 N -0.640 5.640 7 C 0.501 3.499 8 O -0.428 6.428 9 C 0.503 3.497 10 O -0.545 6.545 11 N -0.558 5.558 12 C 0.108 3.892 13 C -0.123 4.123 14 C 0.045 3.955 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.116 4.116 24 C 0.046 3.954 25 N -0.472 5.472 26 C 0.135 3.865 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.427 0.573 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.037 0.963 40 H 0.105 0.895 41 H 0.137 0.863 42 H 0.059 0.941 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.524 18.175 2.172 22.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.177 4.177 3 C -0.075 4.075 4 C -0.224 4.224 5 C 0.125 3.875 6 N -0.288 5.288 7 C 0.283 3.717 8 O -0.296 6.296 9 C 0.284 3.716 10 O -0.425 6.425 11 N -0.289 5.289 12 C -0.014 4.014 13 C -0.161 4.161 14 C 0.027 3.973 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.155 4.155 24 C -0.074 4.074 25 N -0.186 5.186 26 C -0.023 4.023 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.266 0.734 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.123 0.877 41 H 0.153 0.847 42 H 0.077 0.923 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.165 16.908 2.218 21.543 hybrid contribution 0.218 0.324 -0.674 0.779 sum -12.946 17.231 1.543 21.608 Atomic orbital electron populations 1.20645 0.90148 1.02956 1.02411 1.20883 0.97697 0.94150 1.04978 1.21229 0.92915 0.98290 0.95108 1.21472 0.95604 0.96960 1.08334 1.18454 0.84185 0.90014 0.94836 1.43316 1.03806 1.10939 1.70769 1.20709 0.89468 0.83695 0.77851 1.90535 1.66321 1.30984 1.41747 1.19670 0.87441 0.84605 0.79847 1.90701 1.66294 1.33578 1.51907 1.48302 1.08314 1.08404 1.63862 1.21909 0.78075 1.00658 1.00758 1.22027 1.00474 0.96092 0.97511 1.18692 0.91260 0.90241 0.97107 1.21142 1.27118 0.93660 1.13266 0.92800 1.24963 0.95041 0.98556 0.95390 1.69837 1.31341 1.21315 1.30356 0.86677 0.78638 0.81367 0.81411 1.20356 1.21308 1.20356 1.21925 1.00166 0.97446 0.95934 1.23504 0.99860 0.84141 0.99888 1.67672 1.08175 1.28358 1.14396 1.22635 0.88530 0.97758 0.93380 0.91150 0.91221 0.91581 0.84510 0.84433 0.73382 0.91420 0.90159 0.92867 0.91778 0.95470 0.92904 0.94381 0.87685 0.84664 0.92278 0.82309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 10.03 36.00 0.36 -0.22 16 2 C -0.17 -1.50 5.90 -104.45 -0.62 -2.11 16 3 C -0.05 -0.39 9.85 -39.32 -0.39 -0.78 16 4 C -0.20 -1.84 9.94 -39.22 -0.39 -2.23 16 5 C 0.36 4.56 7.42 -154.83 -1.15 3.41 16 6 N -0.64 -8.39 5.38 -11.86 -0.06 -8.45 16 7 C 0.50 8.29 7.74 -11.62 -0.09 8.20 16 8 O -0.43 -8.10 11.37 5.49 0.06 -8.04 16 9 C 0.50 8.92 7.74 -11.62 -0.09 8.83 16 10 O -0.54 -9.88 15.94 5.49 0.09 -9.80 16 11 N -0.56 -10.55 2.98 -173.08 -0.52 -11.06 16 12 C 0.11 1.96 6.40 -3.71 -0.02 1.94 16 13 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 14 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 15 C -0.51 -13.99 8.56 -34.44 -0.29 -14.29 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -25.14 11.31 55.43 0.63 -24.52 16 19 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.12 -2.76 5.15 -26.61 -0.14 -2.90 16 24 C 0.05 0.93 6.28 -3.56 -0.02 0.91 16 25 N -0.47 -6.91 7.88 -12.39 -0.10 -7.01 16 26 C 0.14 1.52 10.85 -17.56 -0.19 1.33 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 30 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.43 4.46 8.18 -40.82 -0.33 4.13 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.39 7.06 -51.93 -0.37 1.02 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.11 2.78 6.03 -51.93 -0.31 2.46 16 41 H 0.14 2.75 3.82 -56.60 -0.22 2.53 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -31.99 352.74 -8.90 -40.89 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.84 Total: 4.43 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -3.45 Total: 1.94 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.05 Total: -51.04 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.15 Total: -17.83 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.99 -8.90 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337911282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.765 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds