Wall clock time and date at job start Tue Mar 31 2020 11:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38835 * 120.34655 * 2 1 4 4 C 1.38355 * 118.49761 * 180.02562 * 3 2 1 5 5 C 1.39083 * 119.09871 * 0.02562 * 4 3 2 6 6 N 1.39242 * 119.69722 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99973 * 175.47118 * 6 5 4 8 8 O 1.21352 * 119.99900 * 4.56212 * 7 6 5 9 9 C 1.49370 * 119.99951 * 184.57355 * 7 6 5 10 10 O 1.21359 * 120.00348 * 354.01517 * 9 7 6 11 11 N 1.34775 * 119.99583 * 174.02311 * 9 7 6 12 12 C 1.46932 * 120.62560 * 172.42506 * 11 9 7 13 13 C 1.53194 * 108.88977 * 233.66796 * 12 11 9 14 14 C 1.53040 * 109.31154 * 305.29571 * 13 12 11 15 15 C 1.50705 * 109.45682 * 181.37142 * 14 13 12 16 16 H 1.08002 * 120.00058 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99926 * 179.97438 * 15 14 13 18 18 N 1.31521 * 120.00072 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00214 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46951 * 60.00370 * 19 17 15 21 21 H 1.48495 * 109.47234 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47030 * 300.00262 * 19 17 15 23 23 C 1.53038 * 109.54123 * 61.36639 * 14 13 12 24 24 C 1.47199 * 120.81802 * 352.55446 * 11 9 7 25 25 N 1.32372 * 120.60003 * 0.24884 * 5 4 3 26 26 C 1.31916 * 121.63727 * 359.48148 * 25 5 4 27 27 H 1.09003 * 109.47120 * 89.99470 * 1 2 3 28 28 H 1.09003 * 109.47608 * 209.99747 * 1 2 3 29 29 H 1.09005 * 109.47297 * 329.99885 * 1 2 3 30 30 H 1.07999 * 120.74860 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.45015 * 180.02562 * 4 3 2 32 32 H 0.96999 * 120.00673 * 355.46837 * 6 5 4 33 33 H 1.09003 * 109.58506 * 113.81630 * 12 11 9 34 34 H 1.08996 * 109.59043 * 353.52724 * 12 11 9 35 35 H 1.09000 * 109.49645 * 65.24867 * 13 12 11 36 36 H 1.09000 * 109.49421 * 185.31271 * 13 12 11 37 37 H 1.08994 * 109.46287 * 301.34027 * 14 13 12 38 38 H 0.96998 * 119.99928 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.49666 * 58.58278 * 23 14 13 40 40 H 1.08996 * 109.49886 * 178.68219 * 23 14 13 41 41 H 1.09002 * 109.53219 * 6.54236 * 24 11 9 42 42 H 1.08999 * 109.68255 * 246.23979 * 24 11 9 43 43 H 1.07996 * 119.57540 * 180.24360 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2084 1.1981 0.0000 4 6 3.5912 1.1535 -0.0005 5 6 4.2280 -0.0830 -0.0016 6 7 5.6192 -0.1424 -0.0027 7 6 6.2428 -1.3338 0.0884 8 8 5.5945 -2.3596 0.0880 9 6 7.7320 -1.3914 0.1902 10 8 8.3874 -0.3758 0.0819 11 7 8.3477 -2.5714 0.4023 12 6 9.8122 -2.6733 0.3403 13 6 10.1908 -3.7850 -0.6433 14 6 9.4900 -5.0827 -0.2345 15 6 9.8867 -6.1869 -1.1803 16 1 10.5697 -5.9835 -1.9918 17 6 9.3777 -7.4569 -1.0096 18 7 8.5455 -7.7045 -0.0217 19 14 9.8688 -8.8254 -2.1823 20 1 11.3402 -9.0186 -2.1291 21 1 9.1891 -10.0847 -1.7859 22 1 9.4671 -8.4607 -3.5647 23 6 7.9735 -4.8848 -0.2897 24 6 7.5698 -3.7855 0.6979 25 7 3.5236 -1.2037 -0.0071 26 6 2.2045 -1.1920 -0.0015 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6864 2.1436 0.0004 31 1 4.1683 2.0664 -0.0001 32 1 6.1395 0.6735 -0.0691 33 1 10.2041 -2.9112 1.3292 34 1 10.2303 -1.7261 -0.0003 35 1 9.8776 -3.5035 -1.6487 36 1 11.2705 -3.9332 -0.6267 37 1 9.7846 -5.3504 0.7801 38 1 8.1872 -8.5979 0.0981 39 1 7.6811 -4.5930 -1.2984 40 1 7.4750 -5.8162 -0.0211 41 1 6.5062 -3.5717 0.5919 42 1 7.7764 -4.1151 1.7161 43 1 1.6631 -2.1264 -0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337911282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:07 Heat of formation + Delta-G solvation = -25.836939 kcal Electronic energy + Delta-G solvation = -26264.158094 eV Core-core repulsion = 22502.577657 eV Total energy + Delta-G solvation = -3761.580437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.39173 -41.20071 -39.67696 -38.64846 -36.57373 -35.27996 -33.94297 -33.05515 -32.42652 -31.76224 -28.70757 -27.85699 -26.15210 -25.00920 -24.24768 -23.77998 -22.68022 -21.67690 -20.57791 -19.31143 -18.67131 -18.42300 -17.75373 -17.16627 -17.12120 -16.53704 -16.20291 -16.06046 -15.94749 -15.42369 -15.26297 -14.91722 -14.77517 -14.60141 -14.50368 -13.98121 -13.93615 -13.65569 -13.42247 -13.22662 -13.20831 -12.80690 -12.63396 -12.55475 -12.36801 -12.14052 -11.97314 -11.77647 -11.51586 -11.12997 -11.03225 -10.76528 -10.56842 -10.40769 -9.82328 -9.74124 -9.21087 -8.07808 -6.21950 -0.19939 0.33530 0.55722 1.09392 1.41415 1.42622 1.50024 2.01129 2.27611 2.43451 2.87969 3.01624 3.18519 3.58354 3.87741 4.04678 4.06384 4.10961 4.15433 4.25772 4.30577 4.46146 4.53454 4.58230 4.76014 4.80012 4.89961 4.90879 4.91661 4.98875 5.11886 5.17384 5.18293 5.34048 5.35599 5.37988 5.47857 5.61515 5.74955 5.86932 5.95998 6.08591 6.19395 6.37133 6.52771 6.78179 6.88313 7.16429 7.45720 8.95719 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.003050 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.340871 B = 9177.066309 C =10435.096888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.159 4.159 3 C -0.049 4.049 4 C -0.185 4.185 5 C 0.317 3.683 6 N -0.624 5.624 7 C 0.502 3.498 8 O -0.461 6.461 9 C 0.507 3.493 10 O -0.544 6.544 11 N -0.567 5.567 12 C 0.113 3.887 13 C -0.114 4.114 14 C 0.043 3.957 15 C -0.535 4.535 16 H 0.051 0.949 17 C 0.013 3.987 18 N -0.914 5.914 19 Si 0.952 3.048 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.275 1.275 23 C -0.105 4.105 24 C 0.062 3.938 25 N -0.519 5.519 26 C 0.106 3.894 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.177 0.823 31 H 0.170 0.830 32 H 0.439 0.561 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.004 0.996 38 H 0.261 0.739 39 H 0.020 0.980 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.060 0.940 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 20.783 1.924 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.162 4.162 3 C -0.075 4.075 4 C -0.207 4.207 5 C 0.088 3.912 6 N -0.273 5.273 7 C 0.284 3.716 8 O -0.332 6.332 9 C 0.289 3.711 10 O -0.424 6.424 11 N -0.298 5.298 12 C -0.009 4.009 13 C -0.152 4.152 14 C 0.024 3.976 15 C -0.573 4.573 16 H 0.070 0.930 17 C -0.185 4.185 18 N -0.553 5.553 19 Si 0.778 3.222 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.201 1.201 23 C -0.144 4.144 24 C -0.059 4.059 25 N -0.233 5.233 26 C -0.051 4.051 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.195 0.805 31 H 0.187 0.813 32 H 0.280 0.720 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.022 0.978 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.093 0.907 41 H 0.157 0.843 42 H 0.078 0.922 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.254 19.579 1.964 24.298 hybrid contribution 0.425 -0.379 -0.609 0.833 sum -13.830 19.201 1.356 23.702 Atomic orbital electron populations 1.20731 0.87776 1.04173 1.03366 1.21252 0.99337 0.93499 1.02134 1.21747 0.92491 0.99569 0.93646 1.21839 0.96454 0.96523 1.05890 1.18743 0.83670 0.91136 0.97676 1.43116 1.04480 1.10070 1.69663 1.20460 0.88726 0.84463 0.78001 1.90502 1.66466 1.32223 1.43967 1.19876 0.88170 0.84046 0.78962 1.90689 1.66660 1.33393 1.51678 1.48256 1.08487 1.08334 1.64746 1.21882 0.77950 1.00309 1.00740 1.21873 1.00699 0.94993 0.97634 1.18660 0.91972 0.91668 0.95303 1.21528 1.27206 0.94886 1.13716 0.93038 1.25720 0.95077 1.00839 0.96907 1.69976 1.32036 1.21664 1.31658 0.85709 0.78589 0.78579 0.79344 1.19518 1.20942 1.20088 1.21674 0.99538 0.97376 0.95789 1.23214 1.00330 0.83688 0.98647 1.67480 1.09929 1.30299 1.15605 1.22873 0.87868 0.99393 0.95011 0.90147 0.90867 0.89577 0.80542 0.81253 0.71986 0.90168 0.88516 0.93734 0.90651 0.97765 0.92986 0.96132 0.90741 0.84329 0.92184 0.81918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.03 71.23 0.71 -0.13 16 2 C -0.16 -2.38 5.90 -19.75 -0.12 -2.50 16 3 C -0.05 -0.59 9.85 22.44 0.22 -0.37 16 4 C -0.18 -2.86 9.94 22.50 0.22 -2.64 16 5 C 0.32 7.87 7.42 132.98 0.99 8.86 16 6 N -0.62 -15.94 5.38 -309.79 -1.67 -17.60 16 7 C 0.50 16.73 7.74 87.24 0.68 17.40 16 8 O -0.46 -18.05 11.37 -3.25 -0.04 -18.09 16 9 C 0.51 17.76 7.74 87.24 0.68 18.44 16 10 O -0.54 -18.96 15.94 -3.28 -0.05 -19.02 16 11 N -0.57 -21.44 2.98 -819.86 -2.45 -23.89 16 12 C 0.11 4.02 6.40 86.36 0.55 4.57 16 13 C -0.11 -4.72 5.30 30.67 0.16 -4.56 16 14 C 0.04 2.14 2.06 -11.51 -0.02 2.12 16 15 C -0.54 -29.83 8.56 25.60 0.22 -29.61 16 16 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 17 C 0.01 0.75 5.30 84.65 0.45 1.20 16 18 N -0.91 -53.19 11.31 21.45 0.24 -52.94 16 19 Si 0.95 44.29 29.54 68.60 2.03 46.32 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 C -0.11 -5.21 5.15 30.67 0.16 -5.05 16 24 C 0.06 2.58 6.28 86.31 0.54 3.12 16 25 N -0.52 -15.41 7.88 -193.11 -1.52 -16.93 16 26 C 0.11 2.36 10.85 84.65 0.92 3.28 16 27 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 29 H 0.09 0.40 8.09 -2.38 -0.02 0.38 16 30 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 31 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.44 8.51 8.18 -92.71 -0.76 7.75 16 33 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.10 3.17 7.06 -2.39 -0.02 3.15 16 35 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 39 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.07 4.15 6.03 -2.39 -0.01 4.14 16 41 H 0.14 5.88 3.82 -76.45 -0.29 5.58 16 42 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -71.48 352.74 2.90 -68.58 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.00 Total: 19.44 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 6.36 Total: 14.14 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -5.39 Total: -111.36 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -0.09 Total: -37.10 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -71.48 2.90 -68.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337911282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.742 kcal (2) G-P(sol) polarization free energy of solvation -71.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds