Wall clock time and date at job start Tue Mar 31 2020 12:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38837 * 120.75050 * 2 1 4 4 C 1.38102 * 119.31251 * 180.02562 * 3 2 1 5 5 N 1.31911 * 120.85611 * 359.97438 * 4 3 2 6 6 C 1.32377 * 121.63417 * 0.02562 * 5 4 3 7 7 N 1.39244 * 119.70105 * 179.97438 * 6 5 4 8 8 C 1.34775 * 120.00025 * 355.66513 * 7 6 5 9 9 O 1.21362 * 120.00154 * 4.54074 * 8 7 6 10 10 C 1.49368 * 119.99988 * 184.54199 * 8 7 6 11 11 O 1.21356 * 120.00293 * 353.89094 * 10 8 7 12 12 N 1.34777 * 119.99783 * 173.60908 * 10 8 7 13 13 C 1.46931 * 120.63363 * 352.69649 * 12 10 8 14 14 C 1.53189 * 108.77435 * 126.36593 * 13 12 10 15 15 C 1.53045 * 109.31318 * 54.64058 * 14 13 12 16 16 C 1.53041 * 109.53535 * 298.63005 * 15 14 13 17 17 H 1.08999 * 109.49742 * 301.41420 * 16 15 14 18 18 C 1.50701 * 109.49494 * 181.31673 * 16 15 14 19 19 H 1.07994 * 119.99909 * 359.97438 * 18 16 15 20 20 C 1.37879 * 119.99512 * 180.02562 * 18 16 15 21 21 N 1.31516 * 119.99434 * 180.02562 * 20 18 16 22 22 Si 1.86797 * 120.00245 * 359.97438 * 20 18 16 23 23 H 1.48497 * 109.47051 * 90.00188 * 22 20 18 24 24 H 1.48506 * 109.47143 * 210.00073 * 22 20 18 25 25 H 1.48494 * 109.47253 * 329.99989 * 22 20 18 26 26 C 1.46926 * 120.63062 * 172.41861 * 12 10 8 27 27 C 1.38358 * 120.74973 * 180.28115 * 2 1 3 28 28 H 1.08993 * 109.47410 * 89.99656 * 1 2 3 29 29 H 1.08996 * 109.47069 * 210.00149 * 1 2 3 30 30 H 1.08998 * 109.46671 * 329.99494 * 1 2 3 31 31 H 1.08002 * 120.34735 * 359.97438 * 3 2 1 32 32 H 1.08006 * 119.56980 * 180.02562 * 4 3 2 33 33 H 0.97002 * 120.00404 * 175.66316 * 7 6 5 34 34 H 1.08999 * 109.58747 * 246.15817 * 13 12 10 35 35 H 1.08996 * 109.58154 * 6.43846 * 13 12 10 36 36 H 1.09005 * 109.49615 * 174.59078 * 14 13 12 37 37 H 1.09000 * 109.50205 * 294.68323 * 14 13 12 38 38 H 1.08994 * 109.46248 * 58.65192 * 15 14 13 39 39 H 1.08997 * 109.45956 * 178.62740 * 15 14 13 40 40 H 0.97008 * 119.99492 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.58695 * 353.41570 * 26 12 10 42 42 H 1.08992 * 109.58980 * 113.84566 * 26 12 10 43 43 H 1.07996 * 120.45282 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1932 0.0000 4 6 3.5975 1.1585 -0.0005 5 7 4.2454 0.0095 -0.0005 6 6 3.6047 -1.1489 -0.0005 7 7 4.3292 -2.3380 -0.0011 8 6 5.6737 -2.3080 -0.0898 9 8 6.2584 -1.2445 -0.0862 10 6 6.4440 -3.5835 -0.1927 11 8 5.8719 -4.6483 -0.0851 12 7 7.7737 -3.5520 -0.4107 13 6 8.4538 -2.2839 -0.7078 14 6 9.6153 -2.1054 0.2748 15 6 10.5240 -3.3353 0.2131 16 6 9.7312 -4.5784 0.6233 17 1 9.3377 -4.4430 1.6307 18 6 10.6351 -5.7839 0.5934 19 1 11.6714 -5.6749 0.3099 20 6 10.1385 -7.0262 0.9271 21 7 10.9275 -8.0781 0.9015 22 14 8.3458 -7.2148 1.4169 23 1 7.5284 -7.4877 0.2075 24 1 8.2097 -8.3441 2.3716 25 1 7.8742 -5.9626 2.0609 26 6 8.5717 -4.7841 -0.3499 27 6 2.2145 -1.1890 -0.0058 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8899 0.5139 31 1 1.6949 2.1387 -0.0004 32 1 4.1539 2.0842 -0.0001 33 1 3.8662 -3.1881 0.0624 34 1 8.8378 -2.3053 -1.7277 35 1 7.7506 -1.4581 -0.5995 36 1 10.1867 -1.2170 0.0052 37 1 9.2230 -1.9932 1.2855 38 1 10.8964 -3.4611 -0.8035 39 1 11.3647 -3.2002 0.8936 40 1 10.5781 -8.9522 1.1360 41 1 7.9470 -5.6073 -0.0030 42 1 8.9656 -5.0136 -1.3399 43 1 1.6942 -2.1354 -0.0101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338236940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:54 Heat of formation + Delta-G solvation = 1.098272 kcal Electronic energy + Delta-G solvation = -26581.312103 eV Core-core repulsion = 22820.899664 eV Total energy + Delta-G solvation = -3760.412439 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.33946 -40.20394 -38.50240 -37.23016 -35.46488 -34.03478 -33.30178 -31.95379 -30.55008 -30.45504 -28.23933 -26.40971 -25.17648 -24.01996 -23.55631 -22.00909 -21.59085 -20.21700 -19.11285 -18.01804 -17.43522 -16.76032 -16.53825 -16.26819 -16.10657 -15.94942 -15.12948 -14.79095 -14.59979 -14.39889 -14.14463 -13.93631 -13.63891 -13.26459 -13.10726 -13.06648 -12.91736 -12.77854 -12.51202 -12.16714 -12.10838 -11.69582 -11.12278 -11.08370 -10.90322 -10.51950 -10.37169 -10.14830 -9.82694 -9.80539 -9.77115 -9.40668 -9.16076 -8.68653 -8.62272 -8.59032 -8.20413 -6.13532 -4.14743 0.69474 0.96851 1.63858 2.20895 3.24208 3.32864 3.38739 3.46786 3.48483 3.65023 4.12214 4.30685 4.37981 4.41542 4.64385 4.76475 4.80248 5.11152 5.13398 5.18321 5.29225 5.42465 5.48675 5.51113 5.57348 5.66435 5.80768 5.97330 6.03515 6.11036 6.14132 6.27651 6.40296 6.45248 6.54847 6.59981 6.70885 6.80256 6.81216 7.12901 7.40239 7.51690 7.66689 7.70139 7.94824 8.13173 8.46438 8.90464 9.47651 10.98589 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023627 B = 0.003323 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.813365 B = 8422.984733 C = 9403.852953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.016 4.016 3 C -0.207 4.207 4 C 0.137 3.863 5 N -0.481 5.481 6 C 0.365 3.635 7 N -0.639 5.639 8 C 0.506 3.494 9 O -0.438 6.438 10 C 0.497 3.503 11 O -0.531 6.531 12 N -0.565 5.565 13 C 0.050 3.950 14 C -0.130 4.130 15 C -0.103 4.103 16 C 0.005 3.995 17 H 0.031 0.969 18 C -0.514 4.514 19 H 0.079 0.921 20 C 0.073 3.927 21 N -0.894 5.894 22 Si 0.877 3.123 23 H -0.271 1.271 24 H -0.294 1.294 25 H -0.266 1.266 26 C 0.099 3.901 27 C -0.206 4.206 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.135 0.865 32 H 0.161 0.839 33 H 0.429 0.571 34 H 0.063 0.937 35 H 0.145 0.855 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.265 0.735 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.845 18.512 -3.175 27.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.024 4.024 3 C -0.229 4.229 4 C -0.021 4.021 5 N -0.196 5.196 6 C 0.135 3.865 7 N -0.287 5.287 8 C 0.288 3.712 9 O -0.307 6.307 10 C 0.278 3.722 11 O -0.410 6.410 12 N -0.296 5.296 13 C -0.071 4.071 14 C -0.168 4.168 15 C -0.141 4.141 16 C -0.015 4.015 17 H 0.049 0.951 18 C -0.552 4.552 19 H 0.097 0.903 20 C -0.130 4.130 21 N -0.532 5.532 22 Si 0.707 3.293 23 H -0.197 1.197 24 H -0.221 1.221 25 H -0.191 1.191 26 C -0.021 4.021 27 C -0.229 4.229 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.153 0.847 32 H 0.178 0.822 33 H 0.268 0.732 34 H 0.081 0.919 35 H 0.162 0.838 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.662 18.417 -3.113 26.403 hybrid contribution -1.958 -0.834 0.281 2.147 sum -20.620 17.583 -2.832 27.246 Atomic orbital electron populations 1.20834 0.89954 1.03474 1.03027 1.20089 0.96662 0.92222 0.93471 1.21976 0.95610 0.98615 1.06670 1.22682 0.91470 0.95373 0.92596 1.67653 1.39726 0.96920 1.15335 1.18433 0.87798 0.86261 0.94058 1.43351 1.06762 1.08196 1.70361 1.20813 0.82477 0.90622 0.77243 1.90437 1.65735 1.31767 1.42785 1.19742 0.83812 0.88411 0.80194 1.90754 1.68711 1.30816 1.50680 1.48388 1.05361 1.11438 1.64462 1.23173 0.97952 0.87351 0.98609 1.21897 0.96573 0.98961 0.99387 1.21484 0.97679 0.93665 1.01248 1.19434 0.92465 0.95285 0.94318 0.95118 1.20957 0.97540 0.90027 1.46710 0.90278 1.25055 0.97519 0.95958 0.94492 1.69890 1.35713 0.99410 1.48146 0.87013 0.85351 0.77849 0.79106 1.19730 1.22075 1.19080 1.22775 0.93142 0.84041 1.02146 1.21365 0.92267 0.99839 1.09466 0.90336 0.90904 0.90825 0.84728 0.82227 0.73159 0.91909 0.83833 0.91527 0.92143 0.92499 0.92180 0.92459 0.90337 0.90713 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 10.06 36.01 0.36 -0.19 16 2 C -0.02 -0.13 5.91 -104.35 -0.62 -0.74 16 3 C -0.21 -1.61 9.81 -39.41 -0.39 -1.99 16 4 C 0.14 1.35 11.17 -17.57 -0.20 1.15 16 5 N -0.48 -6.47 7.88 -12.39 -0.10 -6.57 16 6 C 0.37 4.53 7.42 -154.82 -1.15 3.38 16 7 N -0.64 -8.43 5.38 -11.86 -0.06 -8.49 16 8 C 0.51 8.18 7.73 -11.62 -0.09 8.09 16 9 O -0.44 -7.46 11.36 5.49 0.06 -7.39 16 10 C 0.50 9.43 7.74 -11.62 -0.09 9.34 16 11 O -0.53 -11.17 15.95 5.49 0.09 -11.08 16 12 N -0.56 -11.07 2.98 -173.57 -0.52 -11.59 16 13 C 0.05 0.83 6.27 -3.71 -0.02 0.81 16 14 C -0.13 -2.16 6.08 -26.61 -0.16 -2.32 16 15 C -0.10 -2.02 5.11 -26.69 -0.14 -2.16 16 16 C 0.00 0.11 1.83 -91.87 -0.17 -0.06 16 17 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 18 C -0.51 -14.28 9.15 -34.44 -0.31 -14.60 16 19 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 20 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 21 N -0.89 -27.27 13.96 55.43 0.77 -26.50 16 22 Si 0.88 22.83 24.32 -169.99 -4.13 18.69 16 23 H -0.27 -7.03 6.92 56.52 0.39 -6.64 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 25 H -0.27 -6.89 6.53 56.52 0.37 -6.52 16 26 C 0.10 2.24 5.07 -3.93 -0.02 2.22 16 27 C -0.21 -1.91 9.64 -39.22 -0.38 -2.28 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 30 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 31 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 32 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.43 4.77 8.18 -40.82 -0.33 4.44 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.15 2.35 3.79 -56.74 -0.22 2.13 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.08 1.95 2.37 -51.93 -0.12 1.83 16 42 H 0.07 1.66 8.14 -51.93 -0.42 1.23 16 43 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 346.02 15.07 5.21 5.21 Total: -1.00 -34.08 346.02 -7.85 -41.94 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.71 Total: 3.12 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -3.47 Total: 2.65 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.10 Total: -53.15 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.15 Total: -18.47 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.13 Total: 18.69 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.08 -7.85 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338236940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.034 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds