Wall clock time and date at job start Tue Mar 31 2020 12:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38837 * 120.75050 * 2 1 4 4 C 1.38102 * 119.31251 * 180.02562 * 3 2 1 5 5 N 1.31911 * 120.85611 * 359.97438 * 4 3 2 6 6 C 1.32377 * 121.63417 * 0.02562 * 5 4 3 7 7 N 1.39244 * 119.70105 * 179.97438 * 6 5 4 8 8 C 1.34775 * 120.00025 * 355.66513 * 7 6 5 9 9 O 1.21362 * 120.00154 * 4.54074 * 8 7 6 10 10 C 1.49368 * 119.99988 * 184.54199 * 8 7 6 11 11 O 1.21356 * 120.00293 * 353.89094 * 10 8 7 12 12 N 1.34777 * 119.99783 * 173.60908 * 10 8 7 13 13 C 1.46931 * 120.63363 * 352.69649 * 12 10 8 14 14 C 1.53189 * 108.77435 * 126.36593 * 13 12 10 15 15 C 1.53045 * 109.31318 * 54.64058 * 14 13 12 16 16 C 1.53041 * 109.53535 * 298.63005 * 15 14 13 17 17 H 1.08999 * 109.49742 * 301.41420 * 16 15 14 18 18 C 1.50701 * 109.49494 * 181.31673 * 16 15 14 19 19 H 1.07994 * 119.99909 * 359.97438 * 18 16 15 20 20 C 1.37879 * 119.99512 * 180.02562 * 18 16 15 21 21 N 1.31516 * 119.99434 * 180.02562 * 20 18 16 22 22 Si 1.86797 * 120.00245 * 359.97438 * 20 18 16 23 23 H 1.48497 * 109.47051 * 90.00188 * 22 20 18 24 24 H 1.48506 * 109.47143 * 210.00073 * 22 20 18 25 25 H 1.48494 * 109.47253 * 329.99989 * 22 20 18 26 26 C 1.46926 * 120.63062 * 172.41861 * 12 10 8 27 27 C 1.38358 * 120.74973 * 180.28115 * 2 1 3 28 28 H 1.08993 * 109.47410 * 89.99656 * 1 2 3 29 29 H 1.08996 * 109.47069 * 210.00149 * 1 2 3 30 30 H 1.08998 * 109.46671 * 329.99494 * 1 2 3 31 31 H 1.08002 * 120.34735 * 359.97438 * 3 2 1 32 32 H 1.08006 * 119.56980 * 180.02562 * 4 3 2 33 33 H 0.97002 * 120.00404 * 175.66316 * 7 6 5 34 34 H 1.08999 * 109.58747 * 246.15817 * 13 12 10 35 35 H 1.08996 * 109.58154 * 6.43846 * 13 12 10 36 36 H 1.09005 * 109.49615 * 174.59078 * 14 13 12 37 37 H 1.09000 * 109.50205 * 294.68323 * 14 13 12 38 38 H 1.08994 * 109.46248 * 58.65192 * 15 14 13 39 39 H 1.08997 * 109.45956 * 178.62740 * 15 14 13 40 40 H 0.97008 * 119.99492 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.58695 * 353.41570 * 26 12 10 42 42 H 1.08992 * 109.58980 * 113.84566 * 26 12 10 43 43 H 1.07996 * 120.45282 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1932 0.0000 4 6 3.5975 1.1585 -0.0005 5 7 4.2454 0.0095 -0.0005 6 6 3.6047 -1.1489 -0.0005 7 7 4.3292 -2.3380 -0.0011 8 6 5.6737 -2.3080 -0.0898 9 8 6.2584 -1.2445 -0.0862 10 6 6.4440 -3.5835 -0.1927 11 8 5.8719 -4.6483 -0.0851 12 7 7.7737 -3.5520 -0.4107 13 6 8.4538 -2.2839 -0.7078 14 6 9.6153 -2.1054 0.2748 15 6 10.5240 -3.3353 0.2131 16 6 9.7312 -4.5784 0.6233 17 1 9.3377 -4.4430 1.6307 18 6 10.6351 -5.7839 0.5934 19 1 11.6714 -5.6749 0.3099 20 6 10.1385 -7.0262 0.9271 21 7 10.9275 -8.0781 0.9015 22 14 8.3458 -7.2148 1.4169 23 1 7.5284 -7.4877 0.2075 24 1 8.2097 -8.3441 2.3716 25 1 7.8742 -5.9626 2.0609 26 6 8.5717 -4.7841 -0.3499 27 6 2.2145 -1.1890 -0.0058 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8899 0.5139 31 1 1.6949 2.1387 -0.0004 32 1 4.1539 2.0842 -0.0001 33 1 3.8662 -3.1881 0.0624 34 1 8.8378 -2.3053 -1.7277 35 1 7.7506 -1.4581 -0.5995 36 1 10.1867 -1.2170 0.0052 37 1 9.2230 -1.9932 1.2855 38 1 10.8964 -3.4611 -0.8035 39 1 11.3647 -3.2002 0.8936 40 1 10.5781 -8.9522 1.1360 41 1 7.9470 -5.6073 -0.0030 42 1 8.9656 -5.0136 -1.3399 43 1 1.6942 -2.1354 -0.0101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338236940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:53 Heat of formation + Delta-G solvation = -22.117827 kcal Electronic energy + Delta-G solvation = -26582.318828 eV Core-core repulsion = 22820.899664 eV Total energy + Delta-G solvation = -3761.419164 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.47487 -41.26599 -39.76877 -38.79131 -36.53454 -35.21743 -34.69293 -33.67883 -32.31464 -31.28628 -28.76043 -27.89888 -27.00458 -25.26603 -24.31939 -23.63909 -22.73991 -21.40471 -20.68047 -19.31119 -18.87044 -18.47270 -17.92274 -17.21972 -17.16692 -16.86474 -16.45475 -16.25058 -15.93782 -15.72972 -15.34324 -15.09194 -15.02196 -14.88220 -14.66373 -14.16773 -13.82278 -13.70661 -13.61735 -13.39739 -13.31178 -13.05807 -12.64645 -12.50704 -12.36666 -12.15156 -12.03346 -11.76058 -11.64373 -11.37774 -11.11131 -10.83102 -10.65201 -10.45145 -9.92029 -9.79985 -9.41153 -8.40163 -6.43116 -0.24455 0.28995 0.52076 1.00018 1.22731 1.28735 1.36383 1.93994 2.18048 2.23224 2.87122 2.93887 2.97691 3.53025 3.78480 3.91701 3.97520 4.09441 4.11668 4.15764 4.22924 4.36105 4.45788 4.54128 4.66129 4.69620 4.71544 4.82396 4.84019 4.87401 4.90823 5.02694 5.13628 5.18925 5.24563 5.32332 5.42068 5.46676 5.55380 5.60088 5.68430 5.84698 6.12719 6.22716 6.46712 6.65065 6.70732 7.11977 7.22157 8.75856 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023627 B = 0.003323 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.813365 B = 8422.984733 C = 9403.852953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.019 4.019 3 C -0.192 4.192 4 C 0.117 3.883 5 N -0.521 5.521 6 C 0.331 3.669 7 N -0.628 5.628 8 C 0.515 3.485 9 O -0.450 6.450 10 C 0.493 3.507 11 O -0.557 6.557 12 N -0.571 5.571 13 C 0.050 3.950 14 C -0.121 4.121 15 C -0.099 4.099 16 C 0.004 3.996 17 H 0.016 0.984 18 C -0.512 4.512 19 H 0.052 0.948 20 C 0.027 3.973 21 N -0.936 5.936 22 Si 0.933 3.067 23 H -0.272 1.272 24 H -0.290 1.290 25 H -0.268 1.268 26 C 0.106 3.894 27 C -0.201 4.201 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.168 0.832 32 H 0.178 0.822 33 H 0.436 0.564 34 H 0.079 0.921 35 H 0.155 0.845 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.268 0.732 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.791 21.309 -3.491 31.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.028 4.028 3 C -0.213 4.213 4 C -0.039 4.039 5 N -0.236 5.236 6 C 0.102 3.898 7 N -0.276 5.276 8 C 0.296 3.704 9 O -0.321 6.321 10 C 0.276 3.724 11 O -0.437 6.437 12 N -0.303 5.303 13 C -0.069 4.069 14 C -0.159 4.159 15 C -0.137 4.137 16 C -0.015 4.015 17 H 0.034 0.966 18 C -0.551 4.551 19 H 0.070 0.930 20 C -0.172 4.172 21 N -0.575 5.575 22 Si 0.762 3.238 23 H -0.198 1.198 24 H -0.217 1.217 25 H -0.193 1.193 26 C -0.016 4.016 27 C -0.224 4.224 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.185 0.815 32 H 0.195 0.805 33 H 0.277 0.723 34 H 0.098 0.902 35 H 0.171 0.829 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.649 21.257 -3.430 30.533 hybrid contribution -1.115 -1.575 0.362 1.964 sum -22.764 19.682 -3.068 30.249 Atomic orbital electron populations 1.20910 0.87403 1.04652 1.04051 1.20549 0.98414 0.91622 0.92182 1.22362 0.94863 1.00112 1.03948 1.23092 0.92823 0.95011 0.93015 1.67508 1.41551 0.98080 1.16508 1.18635 0.88783 0.85648 0.96702 1.43171 1.05590 1.09320 1.69541 1.20119 0.83400 0.89014 0.77905 1.90411 1.66190 1.31369 1.44105 1.20282 0.83674 0.89367 0.79097 1.90725 1.69261 1.32136 1.51543 1.48384 1.05778 1.11284 1.64824 1.23386 0.97983 0.86110 0.99465 1.21848 0.96202 0.98648 0.99177 1.21421 0.97730 0.93217 1.01303 1.19357 0.92716 0.95454 0.94006 0.96629 1.21242 0.97082 0.91557 1.45174 0.93025 1.25670 1.00628 0.95925 0.94936 1.69990 1.37393 1.00022 1.50131 0.86105 0.81470 0.77546 0.78663 1.19796 1.21660 1.19293 1.22314 0.92724 0.85003 1.01539 1.21643 0.91013 1.01584 1.08169 0.89208 0.90188 0.89294 0.81478 0.80503 0.72306 0.90249 0.82918 0.87925 0.92889 0.92015 0.92293 0.92232 0.92561 0.90664 0.82411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.06 71.24 0.72 0.11 16 2 C -0.02 -0.24 5.91 -19.69 -0.12 -0.36 16 3 C -0.19 -2.33 9.81 22.38 0.22 -2.11 16 4 C 0.12 2.08 11.17 84.65 0.95 3.02 16 5 N -0.52 -13.37 7.88 -193.10 -1.52 -14.89 16 6 C 0.33 7.79 7.42 132.98 0.99 8.78 16 7 N -0.63 -16.06 5.38 -309.79 -1.67 -17.73 16 8 C 0.51 16.30 7.73 87.24 0.67 16.97 16 9 O -0.45 -14.89 11.36 -3.28 -0.04 -14.93 16 10 C 0.49 18.54 7.74 87.24 0.68 19.22 16 11 O -0.56 -23.40 15.95 -3.26 -0.05 -23.46 16 12 N -0.57 -22.04 2.98 -821.41 -2.45 -24.49 16 13 C 0.05 1.58 6.27 86.36 0.54 2.12 16 14 C -0.12 -3.77 6.08 30.67 0.19 -3.59 16 15 C -0.10 -3.81 5.11 30.62 0.16 -3.65 16 16 C 0.00 0.20 1.83 -11.60 -0.02 0.18 16 17 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 18 C -0.51 -29.17 9.15 25.60 0.23 -28.93 16 19 H 0.05 3.16 7.99 -2.91 -0.02 3.14 16 20 C 0.03 1.62 5.45 84.66 0.46 2.08 16 21 N -0.94 -58.56 13.96 21.45 0.30 -58.26 16 22 Si 0.93 48.52 24.32 68.60 1.67 50.18 16 23 H -0.27 -14.02 6.92 99.48 0.69 -13.33 16 24 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 25 H -0.27 -13.83 6.53 99.48 0.65 -13.18 16 26 C 0.11 4.80 5.07 86.22 0.44 5.23 16 27 C -0.20 -3.25 9.64 22.50 0.22 -3.03 16 28 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.08 0.35 8.10 -2.39 -0.02 0.33 16 30 H 0.09 0.25 8.10 -2.39 -0.02 0.23 16 31 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 32 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.44 9.40 8.18 -92.71 -0.76 8.64 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.15 4.72 3.79 -78.46 -0.30 4.42 16 36 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 41 H 0.06 2.82 2.37 -2.39 -0.01 2.81 16 42 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 43 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -75.70 346.02 2.49 -73.21 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -0.07 Total: 14.31 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 6.31 Total: 16.05 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -5.33 Total: -115.37 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.09 Total: -38.38 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 1.67 Total: 50.18 kcal Total: -75.70 2.49 -73.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338236940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.094 kcal (2) G-P(sol) polarization free energy of solvation -75.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds