Wall clock time and date at job start Tue Mar 31 2020 11:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48494 * 109.47182 * 270.00235 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00179 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99989 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47126 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99926 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99773 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99531 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46883 * 179.97438 * 16 15 13 18 18 C 1.52583 * 109.24405 * 295.56145 * 17 16 15 19 19 C 1.53049 * 109.97728 * 169.67280 * 18 17 16 20 20 S 1.81672 * 108.96611 * 63.70794 * 19 18 17 21 21 O 1.42100 * 108.66151 * 191.35458 * 20 19 18 22 22 O 1.42092 * 108.74885 * 60.04280 * 20 19 18 23 23 C 1.81670 * 101.30540 * 305.68014 * 20 19 18 24 24 C 1.52581 * 109.24103 * 174.44468 * 17 16 15 25 25 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47351 * 59.99818 * 9 7 2 27 27 H 1.09004 * 109.47113 * 300.00244 * 9 7 2 28 28 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 29 29 H 1.08996 * 109.47261 * 299.99589 * 10 9 7 30 30 H 1.09001 * 109.47289 * 59.99704 * 11 10 9 31 31 H 1.08996 * 109.47853 * 299.99816 * 11 10 9 32 32 H 1.08998 * 109.46509 * 60.00429 * 12 11 10 33 33 H 1.08993 * 109.46955 * 299.99989 * 12 11 10 34 34 H 0.96992 * 120.00503 * 359.97438 * 15 13 12 35 35 H 1.09001 * 109.46891 * 60.00097 * 16 15 13 36 36 H 1.08993 * 109.47378 * 299.99469 * 16 15 13 37 37 H 1.09003 * 109.23299 * 55.00476 * 17 16 15 38 38 H 1.09002 * 109.38725 * 289.87078 * 18 17 16 39 39 H 1.09005 * 109.39046 * 49.55436 * 18 17 16 40 40 H 1.08999 * 109.58468 * 303.84931 * 19 18 17 41 41 H 1.09000 * 109.63033 * 183.58926 * 19 18 17 42 42 H 1.09006 * 109.54969 * 294.44253 * 23 20 19 43 43 H 1.08996 * 109.62830 * 174.20606 * 23 20 19 44 44 H 1.09002 * 109.38761 * 310.44586 * 24 17 16 45 45 H 1.08997 * 109.38579 * 70.23480 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 6 2.4742 -6.1501 -0.0005 13 6 1.7206 -7.4552 -0.0005 14 8 0.5078 -7.4551 0.0004 15 7 2.3944 -8.6224 -0.0005 16 6 1.6617 -9.8911 0.0000 17 6 2.6559 -11.0541 -0.0007 18 6 3.4542 -11.0325 -1.3009 19 6 4.6201 -12.0203 -1.2152 20 16 3.9570 -13.7033 -1.0476 21 8 5.0220 -14.5797 -0.7055 22 8 3.1554 -13.9936 -2.1844 23 6 2.8713 -13.5162 0.3969 24 6 1.8929 -12.3680 0.1393 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8902 27 1 0.6245 -2.5571 0.8897 28 1 2.8717 -3.6045 0.8895 29 1 2.8716 -3.6045 -0.8905 30 1 0.8529 -5.0451 -0.8896 31 1 0.8536 -5.0447 0.8903 32 1 3.1013 -6.0923 0.8890 33 1 3.1001 -6.0925 -0.8909 34 1 3.3643 -8.6225 -0.0009 35 1 1.0347 -9.9489 -0.8897 36 1 1.0355 -9.9486 0.8902 37 1 3.3386 -10.9435 0.8418 38 1 2.8034 -11.3111 -2.1298 39 1 3.8431 -10.0284 -1.4702 40 1 5.2368 -11.7832 -0.3482 41 1 5.2232 -11.9544 -2.1207 42 1 3.4723 -13.2926 1.2784 43 1 2.3155 -14.4396 0.5592 44 1 1.1946 -12.2938 0.9730 45 1 1.3400 -12.5650 -0.7792 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343723718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:51 Heat of formation + Delta-G solvation = -145.053264 kcal Electronic energy + Delta-G solvation = -23765.227664 eV Core-core repulsion = 20101.628819 eV Total energy + Delta-G solvation = -3663.598845 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03097 -38.49554 -37.41153 -36.54386 -34.99189 -34.40866 -32.63923 -32.51559 -30.38288 -29.17388 -25.93386 -24.52864 -24.23994 -22.21936 -21.22422 -20.30115 -19.98966 -19.39593 -17.57131 -16.94003 -16.89719 -16.46190 -16.24221 -16.04079 -15.88917 -15.23663 -14.69029 -14.60957 -14.43244 -14.26368 -13.78041 -13.76410 -13.45732 -12.91140 -12.66883 -12.64056 -12.52643 -12.46201 -12.17928 -12.05762 -11.80379 -11.70796 -11.59991 -11.50664 -11.21518 -10.99735 -10.63730 -10.56200 -10.51923 -10.43120 -9.88952 -9.63354 -9.28654 -9.24056 -8.99572 -8.31583 -5.96325 -3.98858 -0.54900 2.09426 2.65608 2.94462 3.09998 3.31393 3.32994 3.39112 3.42087 3.80702 3.84862 3.98633 4.01764 4.25327 4.39400 4.47800 4.58879 4.65056 4.82438 4.91701 4.95817 5.09861 5.14682 5.25417 5.27831 5.32982 5.34308 5.39091 5.45493 5.59036 5.82319 6.11063 6.18732 6.27937 6.52152 6.81656 6.99675 7.18010 7.32087 7.72887 7.88696 8.04949 8.18232 8.46672 9.08817 9.64748 11.14936 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.040893 B = 0.001696 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.546999 B =16509.887227 C =16893.431692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.139 4.139 13 C 0.512 3.488 14 O -0.533 6.533 15 N -0.741 5.741 16 C 0.125 3.875 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.603 4.603 20 S 2.414 3.586 21 O -0.945 6.945 22 O -0.935 6.935 23 C -0.602 4.602 24 C -0.105 4.105 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.399 0.601 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.094 0.906 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.552 -30.217 0.707 31.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.179 4.179 13 C 0.299 3.701 14 O -0.408 6.408 15 N -0.396 5.396 16 C 0.001 3.999 17 C -0.140 4.140 18 C -0.150 4.150 19 C -0.732 4.732 20 S 2.596 3.404 21 O -0.942 6.942 22 O -0.932 6.932 23 C -0.731 4.731 24 C -0.144 4.144 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.234 0.766 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.155 0.845 44 H 0.112 0.888 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.671 -30.857 0.195 32.053 hybrid contribution 0.924 1.549 0.570 1.892 sum 9.596 -29.308 0.765 30.849 Atomic orbital electron populations 1.69976 1.06043 1.26508 1.50884 1.25050 0.94854 0.99248 0.95471 0.86604 0.79804 0.83584 0.78042 1.20716 1.21257 1.19945 1.21280 0.92967 0.91198 1.50445 0.92768 1.19099 0.94068 0.91281 0.97326 1.21649 0.99079 0.94019 1.00047 1.21456 0.97022 0.92712 1.02980 1.21801 1.00118 0.92007 1.03966 1.21117 0.88469 0.85546 0.74945 1.90719 1.14248 1.87648 1.48193 1.46124 1.10205 1.05642 1.77594 1.21273 0.93840 0.81551 1.03254 1.21607 0.98135 0.95308 0.98919 1.21423 0.94554 1.00553 0.98443 1.30227 1.09275 1.21548 1.12144 1.08168 0.76765 0.77878 0.77587 1.93606 1.54334 1.61657 1.84590 1.93605 1.69558 1.82830 1.47202 1.30223 1.14318 1.08008 1.20594 1.21265 0.97432 0.90334 1.05371 0.93042 0.96578 0.96593 0.93498 0.93482 0.91788 0.91803 0.89145 0.89139 0.76634 0.90835 0.90848 0.89067 0.89111 0.88970 0.84741 0.84484 0.84771 0.84494 0.88753 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 11 C -0.10 -1.79 4.50 -26.73 -0.12 -1.91 16 12 C -0.14 -1.69 5.70 -27.88 -0.16 -1.85 16 13 C 0.51 6.36 7.83 -10.98 -0.09 6.27 16 14 O -0.53 -9.08 15.98 5.56 0.09 -8.99 16 15 N -0.74 -5.72 5.16 -60.29 -0.31 -6.03 16 16 C 0.12 0.81 5.03 -4.04 -0.02 0.79 16 17 C -0.12 -0.40 1.98 -91.04 -0.18 -0.58 16 18 C -0.11 -0.37 4.97 -26.92 -0.13 -0.50 16 19 C -0.60 -1.53 6.35 37.18 0.24 -1.30 16 20 S 2.41 11.94 5.30 -107.50 -0.57 11.37 16 21 O -0.94 -8.35 18.10 -57.82 -1.05 -9.40 16 22 O -0.93 -8.19 17.95 -57.82 -1.04 -9.23 16 23 C -0.60 -1.44 6.35 37.18 0.24 -1.21 16 24 C -0.11 -0.31 5.02 -26.93 -0.14 -0.45 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 31 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.40 1.84 7.63 -40.82 -0.31 1.53 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.09 0.15 8.09 -51.93 -0.42 -0.27 16 38 H 0.09 0.35 8.01 -51.93 -0.42 -0.07 16 39 H 0.09 0.27 6.91 -51.93 -0.36 -0.09 16 40 H 0.13 0.07 8.14 -51.93 -0.42 -0.36 16 41 H 0.14 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.13 0.07 8.14 -51.92 -0.42 -0.35 16 43 H 0.14 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.09 0.23 8.06 -51.93 -0.42 -0.19 16 45 H 0.09 0.29 8.01 -51.93 -0.42 -0.12 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -39.85 375.67 -10.34 -50.19 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -7.79 Total: -7.26 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -1.05 Total: -16.43 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.43 Total: -32.66 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -2.00 Total: -27.62 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 11.94 SS G_CDS: -0.57 Total: 11.37 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.85 -10.34 -50.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343723718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.865 kcal (2) G-P(sol) polarization free energy of solvation -39.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds