Wall clock time and date at job start Tue Mar 31 2020 11:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48494 * 109.47182 * 270.00235 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00179 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99989 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47126 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99926 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99773 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99531 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46883 * 179.97438 * 16 15 13 18 18 C 1.52583 * 109.24405 * 295.56145 * 17 16 15 19 19 C 1.53049 * 109.97728 * 169.67280 * 18 17 16 20 20 S 1.81672 * 108.96611 * 63.70794 * 19 18 17 21 21 O 1.42100 * 108.66151 * 191.35458 * 20 19 18 22 22 O 1.42092 * 108.74885 * 60.04280 * 20 19 18 23 23 C 1.81670 * 101.30540 * 305.68014 * 20 19 18 24 24 C 1.52581 * 109.24103 * 174.44468 * 17 16 15 25 25 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47351 * 59.99818 * 9 7 2 27 27 H 1.09004 * 109.47113 * 300.00244 * 9 7 2 28 28 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 29 29 H 1.08996 * 109.47261 * 299.99589 * 10 9 7 30 30 H 1.09001 * 109.47289 * 59.99704 * 11 10 9 31 31 H 1.08996 * 109.47853 * 299.99816 * 11 10 9 32 32 H 1.08998 * 109.46509 * 60.00429 * 12 11 10 33 33 H 1.08993 * 109.46955 * 299.99989 * 12 11 10 34 34 H 0.96992 * 120.00503 * 359.97438 * 15 13 12 35 35 H 1.09001 * 109.46891 * 60.00097 * 16 15 13 36 36 H 1.08993 * 109.47378 * 299.99469 * 16 15 13 37 37 H 1.09003 * 109.23299 * 55.00476 * 17 16 15 38 38 H 1.09002 * 109.38725 * 289.87078 * 18 17 16 39 39 H 1.09005 * 109.39046 * 49.55436 * 18 17 16 40 40 H 1.08999 * 109.58468 * 303.84931 * 19 18 17 41 41 H 1.09000 * 109.63033 * 183.58926 * 19 18 17 42 42 H 1.09006 * 109.54969 * 294.44253 * 23 20 19 43 43 H 1.08996 * 109.62830 * 174.20606 * 23 20 19 44 44 H 1.09002 * 109.38761 * 310.44586 * 24 17 16 45 45 H 1.08997 * 109.38579 * 70.23480 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 6 2.4742 -6.1501 -0.0005 13 6 1.7206 -7.4552 -0.0005 14 8 0.5078 -7.4551 0.0004 15 7 2.3944 -8.6224 -0.0005 16 6 1.6617 -9.8911 0.0000 17 6 2.6559 -11.0541 -0.0007 18 6 3.4542 -11.0325 -1.3009 19 6 4.6201 -12.0203 -1.2152 20 16 3.9570 -13.7033 -1.0476 21 8 5.0220 -14.5797 -0.7055 22 8 3.1554 -13.9936 -2.1844 23 6 2.8713 -13.5162 0.3969 24 6 1.8929 -12.3680 0.1393 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8902 27 1 0.6245 -2.5571 0.8897 28 1 2.8717 -3.6045 0.8895 29 1 2.8716 -3.6045 -0.8905 30 1 0.8529 -5.0451 -0.8896 31 1 0.8536 -5.0447 0.8903 32 1 3.1013 -6.0923 0.8890 33 1 3.1001 -6.0925 -0.8909 34 1 3.3643 -8.6225 -0.0009 35 1 1.0347 -9.9489 -0.8897 36 1 1.0355 -9.9486 0.8902 37 1 3.3386 -10.9435 0.8418 38 1 2.8034 -11.3111 -2.1298 39 1 3.8431 -10.0284 -1.4702 40 1 5.2368 -11.7832 -0.3482 41 1 5.2232 -11.9544 -2.1207 42 1 3.4723 -13.2926 1.2784 43 1 2.3155 -14.4396 0.5592 44 1 1.1946 -12.2938 0.9730 45 1 1.3400 -12.5650 -0.7792 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343723718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:50 Heat of formation + Delta-G solvation = -175.568278 kcal Electronic energy + Delta-G solvation = -23766.550894 eV Core-core repulsion = 20101.628819 eV Total energy + Delta-G solvation = -3664.922075 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.86477 -38.99740 -37.91630 -37.04343 -36.61936 -35.17199 -34.58403 -32.75335 -31.69531 -30.07052 -27.47169 -25.29597 -24.65528 -23.68443 -21.76630 -21.61689 -21.06316 -19.77272 -18.41251 -18.07968 -17.63123 -17.30083 -17.04998 -16.91244 -16.61099 -16.47585 -15.90836 -15.29879 -15.16071 -14.92582 -14.53521 -14.51562 -14.27300 -13.90530 -13.71113 -13.56366 -13.26974 -13.23297 -13.16671 -13.05264 -12.80247 -12.71828 -12.41215 -12.31042 -12.16927 -12.13237 -12.09436 -11.80940 -11.54372 -11.35427 -11.33733 -11.14536 -10.89674 -10.72420 -10.54204 -10.04024 -8.17936 -6.29972 -0.88325 1.41042 1.43208 1.54221 1.71215 1.80336 2.24042 2.42737 2.77488 2.98134 3.14766 3.55414 3.56859 3.67417 3.77880 3.92475 4.08453 4.09700 4.17007 4.18859 4.37505 4.41890 4.57719 4.69151 4.71194 4.72568 4.84387 4.87598 4.89280 4.91669 4.95586 5.00224 5.16811 5.22369 5.28792 5.35624 5.39704 5.51843 5.59803 5.79941 5.89527 6.26318 6.61986 6.88766 7.34743 7.39588 8.94177 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.040893 B = 0.001696 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.546999 B =16509.887227 C =16893.431692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.129 4.129 13 C 0.510 3.490 14 O -0.590 6.590 15 N -0.717 5.717 16 C 0.121 3.879 17 C -0.112 4.112 18 C -0.118 4.118 19 C -0.584 4.584 20 S 2.405 3.595 21 O -0.991 6.991 22 O -0.986 6.986 23 C -0.583 4.583 24 C -0.111 4.111 25 H 0.262 0.738 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.419 0.581 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.167 0.833 41 H 0.145 0.855 42 H 0.164 0.836 43 H 0.145 0.855 44 H 0.104 0.896 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.612 -30.107 1.772 32.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.136 4.136 12 C -0.169 4.169 13 C 0.298 3.702 14 O -0.470 6.470 15 N -0.371 5.371 16 C -0.003 4.003 17 C -0.130 4.130 18 C -0.156 4.156 19 C -0.715 4.715 20 S 2.594 3.406 21 O -0.989 6.989 22 O -0.983 6.983 23 C -0.715 4.715 24 C -0.150 4.150 25 H 0.071 0.929 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.257 0.743 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.140 0.860 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.184 0.816 41 H 0.163 0.837 42 H 0.182 0.818 43 H 0.164 0.836 44 H 0.123 0.877 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.805 -30.826 1.236 33.032 hybrid contribution -0.096 1.528 0.261 1.553 sum 11.709 -29.298 1.497 31.587 Atomic orbital electron populations 1.70136 1.08060 1.27705 1.51900 1.26107 0.95802 1.03773 0.94859 0.85377 0.78679 0.78064 0.78484 1.19775 1.21012 1.18269 1.21763 0.93758 0.92217 1.50153 0.91526 1.19073 0.94753 0.93894 0.94280 1.21448 0.97779 0.92776 1.01324 1.21249 0.97591 0.93794 1.00918 1.21676 0.98874 0.89578 1.06755 1.21150 0.87713 0.86846 0.74512 1.90710 1.16654 1.88439 1.51227 1.45888 1.11211 1.04749 1.75265 1.21367 0.94649 0.81985 1.02305 1.21580 0.97689 0.93695 1.00050 1.21491 0.94703 1.01219 0.98187 1.30058 1.09247 1.18050 1.14178 1.08057 0.76225 0.78745 0.77606 1.93546 1.55921 1.64215 1.85174 1.93540 1.70476 1.84347 1.49953 1.30054 1.13667 1.08327 1.19458 1.21322 0.97752 0.90382 1.05509 0.92898 0.99790 0.99737 0.92020 0.92067 0.94056 0.93958 0.86211 0.86321 0.74283 0.92366 0.91496 0.86044 0.90248 0.87808 0.81555 0.83696 0.81818 0.83638 0.87706 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.72 13.29 21.45 0.28 -58.44 16 2 C -0.01 -0.49 5.46 84.66 0.46 -0.02 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.02 0.93 4.97 29.85 0.15 1.08 16 10 C -0.10 -3.79 5.15 30.59 0.16 -3.63 16 11 C -0.10 -3.36 4.50 30.60 0.14 -3.22 16 12 C -0.13 -2.79 5.70 29.85 0.17 -2.62 16 13 C 0.51 11.84 7.83 87.66 0.69 12.53 16 14 O -0.59 -20.39 15.98 -3.03 -0.05 -20.44 16 15 N -0.72 -8.96 5.16 -463.05 -2.39 -11.35 16 16 C 0.12 1.34 5.03 86.38 0.43 1.78 16 17 C -0.11 -0.37 1.98 -11.07 -0.02 -0.39 16 18 C -0.12 -0.44 4.97 30.47 0.15 -0.29 16 19 C -0.58 -1.24 6.35 72.00 0.46 -0.78 16 20 S 2.41 21.75 5.30 -56.49 -0.30 21.45 16 21 O -0.99 -17.27 18.10 -127.38 -2.31 -19.58 16 22 O -0.99 -18.04 17.95 -127.38 -2.29 -20.32 16 23 C -0.58 -1.33 6.35 72.00 0.46 -0.87 16 24 C -0.11 -0.41 5.02 30.47 0.15 -0.26 16 25 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 26 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 27 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 31 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 32 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.42 1.94 7.63 -92.71 -0.71 1.23 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 37 H 0.12 -0.25 8.09 -2.39 -0.02 -0.27 16 38 H 0.08 0.52 8.01 -2.39 -0.02 0.50 16 39 H 0.10 0.20 6.91 -2.38 -0.02 0.18 16 40 H 0.17 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.16 -0.54 8.14 -2.38 -0.02 -0.55 16 43 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.10 0.25 8.06 -2.39 -0.02 0.23 16 45 H 0.08 0.48 8.01 -2.39 -0.02 0.46 16 Total: -1.00 -91.65 375.67 -1.13 -92.79 By element: Atomic # 1 Polarization: -3.28 SS G_CDS: 0.26 Total: -3.03 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 3.63 Total: -27.54 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -2.10 Total: -69.79 kcal Atomic # 8 Polarization: -55.69 SS G_CDS: -4.64 Total: -60.33 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 21.75 SS G_CDS: -0.30 Total: 21.45 kcal Total: -91.65 -1.13 -92.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343723718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.781 kcal (2) G-P(sol) polarization free energy of solvation -91.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds