Wall clock time and date at job start Tue Mar 31 2020 12:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35462 * 119.62508 * 2 1 4 4 C 1.41180 * 119.18319 * 179.97438 * 3 2 1 5 5 N 1.34678 * 120.74190 * 180.02562 * 4 3 2 6 6 C 1.32555 * 120.00518 * 175.83447 * 5 4 3 7 7 O 1.21912 * 119.99830 * 64.72902 * 6 5 4 8 8 C 1.49098 * 120.00008 * 244.73707 * 6 5 4 9 9 O 1.21403 * 119.99706 * 353.55151 * 8 6 5 10 10 N 1.34770 * 119.99835 * 173.55396 * 8 6 5 11 11 C 1.46928 * 120.63375 * 350.93202 * 10 8 6 12 12 C 1.52758 * 109.00498 * 233.58468 * 11 10 8 13 13 C 1.53039 * 109.38673 * 305.58527 * 12 11 10 14 14 C 1.50704 * 109.44979 * 181.25773 * 13 12 11 15 15 H 1.08001 * 119.99553 * 239.93901 * 14 13 12 16 16 C 1.37875 * 120.00089 * 59.93706 * 14 13 12 17 17 N 1.31514 * 120.00041 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00077 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46941 * 90.00011 * 18 16 14 20 20 H 1.48494 * 109.47155 * 210.00202 * 18 16 14 21 21 H 1.48504 * 109.46862 * 330.00500 * 18 16 14 22 22 C 1.53039 * 109.53744 * 61.24159 * 13 12 11 23 23 C 1.46931 * 120.62843 * 171.21342 * 10 8 6 24 24 C 1.41184 * 118.52141 * 0.02562 * 4 3 2 25 25 C 1.35472 * 119.17960 * 359.97438 * 24 4 3 26 26 N 1.34781 * 120.75177 * 359.97438 * 25 24 4 27 27 H 0.96997 * 119.19435 * 180.02562 * 26 25 24 28 28 H 1.09002 * 109.46965 * 90.00140 * 1 2 3 29 29 H 1.09002 * 109.46945 * 209.99771 * 1 2 3 30 30 H 1.08996 * 109.47023 * 330.00345 * 1 2 3 31 31 H 1.08003 * 120.40736 * 0.27378 * 3 2 1 32 32 H 1.08998 * 109.58123 * 353.41467 * 11 10 8 33 33 H 1.08991 * 109.58772 * 113.84193 * 11 10 8 34 34 H 1.09005 * 109.56356 * 185.54983 * 12 11 10 35 35 H 1.09007 * 109.36209 * 65.49855 * 12 11 10 36 36 H 1.08997 * 109.46183 * 301.22136 * 13 12 11 37 37 H 0.96998 * 120.00155 * 179.97438 * 17 16 14 38 38 H 1.08995 * 109.49710 * 178.68120 * 22 13 12 39 39 H 1.09003 * 109.52134 * 58.60051 * 22 13 12 40 40 H 1.08996 * 109.58510 * 246.15769 * 23 10 8 41 41 H 1.08998 * 109.58564 * 6.43349 * 23 10 8 42 42 H 1.07994 * 120.41130 * 180.02562 * 24 4 3 43 43 H 1.08001 * 119.61828 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1767 1.1775 0.0000 4 6 3.5884 1.1667 0.0006 5 7 4.2857 2.3188 0.0011 6 6 5.6084 2.2931 0.0850 7 8 6.2665 1.7953 -0.8124 8 6 6.2912 2.8729 1.2769 9 8 5.6471 3.4717 2.1139 10 7 7.6233 2.7322 1.4251 11 6 8.3866 1.8481 0.5337 12 6 9.1913 0.8631 1.3797 13 6 10.0493 1.6377 2.3826 14 6 10.8670 0.6686 3.1972 15 1 10.7521 0.6342 4.2705 16 6 11.7616 -0.1740 2.5721 17 7 11.9010 -0.1324 1.2651 18 14 12.7756 -1.3746 3.5819 19 1 12.0392 -2.6576 3.7115 20 1 14.0753 -1.6160 2.9054 21 1 13.0183 -0.8047 4.9315 22 6 9.1435 2.4481 3.3126 23 6 8.3391 3.4554 2.4851 24 6 4.2530 -0.0790 0.0005 25 6 3.5203 -1.2185 0.0005 26 7 2.1733 -1.1717 0.0010 27 1 1.6710 -2.0015 0.0014 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6372 2.1132 0.0045 32 1 7.7005 1.2986 -0.1109 33 1 9.0668 2.4428 -0.0759 34 1 9.8358 0.2680 0.7327 35 1 8.5077 0.2057 1.9170 36 1 10.7154 2.3129 1.8455 37 1 12.5307 -0.7249 0.8254 38 1 9.7541 2.9811 4.0414 39 1 8.4604 1.7761 3.8321 40 1 9.0154 4.1838 2.0379 41 1 7.6219 3.9682 3.1260 42 1 5.3320 -0.1229 0.0014 43 1 4.0213 -2.1752 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354216340.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:23 Heat of formation + Delta-G solvation = 5.029441 kcal Electronic energy + Delta-G solvation = -26445.609456 eV Core-core repulsion = 22685.367485 eV Total energy + Delta-G solvation = -3760.241971 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.35805 -40.16286 -38.20927 -36.69487 -35.32222 -33.60045 -33.33710 -31.15094 -30.96270 -29.94808 -28.38025 -26.54821 -24.97891 -23.66291 -23.07672 -22.26737 -21.32881 -19.49831 -19.16477 -18.47120 -17.24212 -16.75527 -16.50974 -16.12056 -15.55614 -15.38736 -15.24937 -14.93152 -14.48088 -14.07907 -13.86080 -13.54299 -13.35673 -13.10994 -12.98921 -12.88523 -12.71731 -12.52296 -12.18831 -12.09847 -11.71227 -11.56273 -11.29347 -10.91251 -10.69582 -10.50151 -10.26758 -10.01768 -9.82573 -9.68268 -9.48279 -9.08260 -8.99727 -8.43766 -8.25930 -7.87113 -7.64094 -5.95891 -4.02351 0.59458 0.95500 1.73801 2.41666 3.09081 3.30900 3.35547 3.37932 3.41555 3.81209 3.90512 4.23205 4.45332 4.48353 4.66624 4.80186 4.85632 4.88088 5.15353 5.20882 5.33092 5.34916 5.79727 5.80797 5.88960 6.00681 6.07695 6.23254 6.29654 6.37741 6.43560 6.58257 6.59149 6.68322 6.78719 6.96079 7.12762 7.25926 7.36465 7.67738 7.74535 7.93353 8.01547 8.11694 8.23780 8.47948 8.64440 9.01067 9.61875 11.09381 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016812 B = 0.003264 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.035187 B = 8576.901761 C = 9510.539025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.152 3.848 3 C -0.193 4.193 4 C 0.317 3.683 5 N -0.616 5.616 6 C 0.498 3.502 7 O -0.493 6.493 8 C 0.492 3.508 9 O -0.528 6.528 10 N -0.574 5.574 11 C 0.071 3.929 12 C -0.122 4.122 13 C 0.046 3.954 14 C -0.511 4.511 15 H 0.054 0.946 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.121 4.121 23 C 0.108 3.892 24 C -0.254 4.254 25 C 0.141 3.859 26 N -0.578 5.578 27 H 0.419 0.581 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.155 0.845 32 H 0.115 0.885 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.033 0.967 36 H 0.028 0.972 37 H 0.260 0.740 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.151 0.849 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.282 -5.511 -4.691 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.040 3.960 3 C -0.219 4.219 4 C 0.161 3.839 5 N -0.353 5.353 6 C 0.282 3.718 7 O -0.369 6.369 8 C 0.274 3.726 9 O -0.405 6.405 10 N -0.307 5.307 11 C -0.050 4.050 12 C -0.161 4.161 13 C 0.028 3.972 14 C -0.549 4.549 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.160 4.160 23 C -0.014 4.014 24 C -0.281 4.281 25 C 0.010 3.990 26 N -0.181 5.181 27 H 0.256 0.744 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.172 0.828 32 H 0.132 0.868 33 H 0.078 0.922 34 H 0.123 0.877 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.169 0.831 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -24.098 -4.560 -4.905 25.011 hybrid contribution 1.128 -1.470 0.537 1.929 sum -22.970 -6.030 -4.368 24.147 Atomic orbital electron populations 1.21038 0.87420 1.05032 1.04377 1.20276 0.94984 0.85496 0.95228 1.20481 0.92300 0.97456 1.11694 1.18682 0.92831 0.87633 0.84800 1.68091 1.06865 1.24912 1.35462 1.21302 0.87637 0.76514 0.86371 1.90627 1.67821 1.39879 1.38561 1.20325 0.82825 0.82112 0.87298 1.90663 1.64525 1.42371 1.42967 1.48277 1.05884 1.43949 1.32638 1.22872 0.96343 0.92869 0.92880 1.21949 0.97376 0.97424 0.99346 1.18670 0.92074 0.93875 0.92608 1.21210 1.20986 1.19298 0.93391 0.92766 1.24970 0.96899 0.97275 0.94905 1.69856 1.36357 1.38822 1.07895 0.86625 0.79690 0.81473 0.80372 1.20835 1.21278 1.19996 1.21992 0.98188 0.97328 0.98447 1.21808 0.95270 0.94835 0.89525 1.21913 1.02293 0.91996 1.11890 1.21721 0.82160 1.00958 0.94177 1.40757 1.06344 1.08916 1.62086 0.74445 0.89180 0.90445 0.88541 0.82772 0.86753 0.92195 0.87742 0.94783 0.95423 0.93027 0.92074 0.93009 0.91798 0.90307 0.83138 0.80969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.17 10.06 36.01 0.36 0.19 16 2 C 0.15 0.81 6.79 -82.28 -0.56 0.25 16 3 C -0.19 -1.89 9.61 -39.46 -0.38 -2.27 16 4 C 0.32 4.56 6.60 -84.38 -0.56 4.00 16 5 N -0.62 -11.65 10.27 -10.81 -0.11 -11.76 16 6 C 0.50 10.32 6.05 -12.73 -0.08 10.25 16 7 O -0.49 -10.42 12.68 5.00 0.06 -10.35 16 8 C 0.49 10.91 7.72 -11.75 -0.09 10.81 16 9 O -0.53 -12.55 16.34 5.45 0.09 -12.46 16 10 N -0.57 -12.49 2.98 -173.68 -0.52 -13.01 16 11 C 0.07 1.56 5.94 -3.93 -0.02 1.54 16 12 C -0.12 -2.98 5.14 -26.84 -0.14 -3.12 16 13 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 14 C -0.51 -14.15 8.56 -34.44 -0.29 -14.44 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -25.35 11.30 55.43 0.63 -24.73 16 18 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.12 -2.69 5.30 -26.61 -0.14 -2.84 16 23 C 0.11 2.23 6.45 -3.71 -0.02 2.20 16 24 C -0.25 -3.11 9.05 -39.45 -0.36 -3.47 16 25 C 0.14 0.92 11.15 -17.24 -0.19 0.73 16 26 N -0.58 -2.23 5.18 -9.53 -0.05 -2.28 16 27 H 0.42 -0.11 8.74 -40.82 -0.36 -0.47 16 28 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.08 -0.03 8.13 -51.93 -0.42 -0.45 16 30 H 0.10 0.13 8.07 -51.93 -0.42 -0.28 16 31 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.12 2.48 4.32 -54.79 -0.24 2.25 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.10 2.78 6.03 -51.93 -0.31 2.47 16 35 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.08 1.59 7.00 -51.93 -0.36 1.23 16 42 H 0.15 2.21 6.39 -52.49 -0.34 1.88 16 43 H 0.17 0.53 8.06 -52.49 -0.42 0.10 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -38.05 353.25 -8.14 -46.20 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.79 Total: 0.34 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -2.75 Total: 6.41 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.05 Total: -51.77 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: 0.15 Total: -22.82 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -38.05 -8.14 -46.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354216340.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.227 kcal (2) G-P(sol) polarization free energy of solvation -38.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds