Wall clock time and date at job start Tue Mar 31 2020 12:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 C 1.50695 * 109.47145 * 265.30936 * 8 7 6 10 10 O 1.21292 * 119.99919 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00283 * 179.97438 * 9 8 7 12 12 C 1.46509 * 120.00295 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.46724 * 90.00099 * 12 11 9 14 14 H 1.08000 * 120.00104 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99496 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00555 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99844 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47181 * 59.99417 * 17 15 13 19 19 H 1.48492 * 109.47299 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46835 * 299.99972 * 17 15 13 21 21 C 1.46498 * 120.00173 * 359.97438 * 11 9 8 22 22 C 1.50706 * 109.47332 * 89.99612 * 21 11 9 23 23 C 1.34516 * 125.78574 * 90.00276 * 22 21 11 24 24 C 1.41380 * 106.83656 * 180.02562 * 23 22 21 25 25 C 1.34513 * 106.84658 * 0.02562 * 24 23 22 26 26 O 1.34298 * 125.78873 * 269.70034 * 22 21 11 27 27 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 28 28 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 29 29 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 30 30 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 31 31 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 32 32 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 33 33 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 34 34 H 1.09003 * 109.47210 * 25.30474 * 8 7 6 35 35 H 1.09000 * 109.47322 * 145.30308 * 8 7 6 36 36 H 1.08995 * 109.47051 * 210.00235 * 12 11 9 37 37 H 1.08996 * 109.46557 * 330.00389 * 12 11 9 38 38 H 0.96993 * 119.99757 * 180.02562 * 16 15 13 39 39 H 1.08991 * 109.47624 * 210.00186 * 21 11 9 40 40 H 1.09003 * 109.46812 * 330.00391 * 21 11 9 41 41 H 1.08000 * 126.58060 * 359.96418 * 23 22 21 42 42 H 1.08000 * 126.57668 * 179.97438 * 24 23 22 43 43 H 1.07993 * 125.79555 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 6 1.5860 -3.0047 -1.4160 10 8 1.7532 -2.2301 -2.3343 11 7 1.1551 -4.2579 -1.6616 12 6 0.8883 -4.6844 -3.0375 13 6 2.1426 -5.2688 -3.6344 14 1 3.0478 -5.3180 -3.0474 15 6 2.1344 -5.7407 -4.9299 16 7 1.0320 -5.6813 -5.6445 17 14 3.6890 -6.4657 -5.6696 18 1 4.1213 -7.6360 -4.8641 19 1 3.4187 -6.8980 -7.0642 20 1 4.7629 -5.4400 -5.6681 21 6 0.9536 -5.1937 -0.5526 22 6 -0.4613 -5.0764 -0.0470 23 6 -1.5159 -5.7844 -0.4896 24 6 -2.6384 -5.3563 0.2558 25 6 -2.2027 -4.4119 1.1089 26 8 -0.8819 -4.2514 0.9257 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 5.0836 1.7155 1.0262 31 1 5.6089 0.9983 -0.5158 32 1 4.5560 2.4334 -0.5147 33 1 4.4892 -1.3485 -0.0129 34 1 2.6329 -3.2001 0.4332 35 1 0.9471 -2.6503 0.5891 36 1 0.1005 -5.4377 -3.0381 37 1 0.5704 -3.8257 -3.6288 38 1 1.0263 -6.0136 -6.5557 39 1 1.1325 -6.2115 -0.8989 40 1 1.6482 -4.9567 0.2534 41 1 -1.5071 -6.5350 -1.2661 42 1 -3.6515 -5.7175 0.1583 43 1 -2.8108 -3.8773 1.8235 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361695461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:00 Heat of formation + Delta-G solvation = 61.195728 kcal Electronic energy + Delta-G solvation = -26769.180407 eV Core-core repulsion = 23011.373989 eV Total energy + Delta-G solvation = -3757.806418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28915 -41.07456 -38.78012 -35.14100 -33.98759 -32.82228 -32.66399 -31.61954 -30.08802 -29.59365 -28.11176 -26.76146 -25.36184 -24.63536 -22.65517 -21.45182 -20.62378 -20.44147 -19.47907 -18.38388 -17.24506 -16.52262 -16.48743 -16.21540 -15.65075 -15.31685 -15.05243 -14.78193 -14.30174 -14.16294 -13.79501 -13.37761 -13.25003 -12.91657 -12.62395 -12.58554 -12.51866 -12.48952 -12.27922 -12.02981 -11.94828 -11.89320 -11.52345 -11.38922 -11.17125 -10.89210 -10.57305 -10.26804 -10.17140 -9.70551 -9.63410 -9.00068 -8.90134 -8.42942 -8.26904 -8.05542 -7.73192 -6.03461 -4.08314 1.93730 2.08354 2.67223 2.85778 2.96500 3.18275 3.31380 3.36456 3.38526 3.57079 4.12679 4.45762 4.58031 4.95130 4.96506 5.09310 5.13778 5.16936 5.28409 5.29413 5.33191 5.33683 5.44497 5.45929 5.59483 5.62026 5.81596 5.91481 5.96168 6.04597 6.10245 6.21964 6.22228 6.31750 6.36942 6.75030 6.89171 7.08237 7.20245 7.36010 7.48321 7.55606 7.92965 7.93772 8.24115 8.40347 8.91876 9.15046 9.56815 11.04618 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008563 B = 0.005350 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.116235 B = 5232.229046 C = 7840.622099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.093 3.907 3 N -0.305 5.305 4 N -0.382 5.382 5 C 0.107 3.893 6 C 0.064 3.936 7 C -0.206 4.206 8 C -0.066 4.066 9 C 0.510 3.490 10 O -0.525 6.525 11 N -0.597 5.597 12 C 0.248 3.752 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.191 3.809 22 C -0.025 4.025 23 C -0.195 4.195 24 C -0.213 4.213 25 C -0.051 4.051 26 O -0.177 6.177 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.170 0.830 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.032 0.968 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 5.213 16.896 17.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 N -0.128 5.128 4 N -0.164 5.164 5 C -0.035 4.035 6 C -0.081 4.081 7 C -0.217 4.217 8 C -0.107 4.107 9 C 0.296 3.704 10 O -0.401 6.401 11 N -0.330 5.330 12 C 0.129 3.871 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.203 1.203 21 C 0.066 3.934 22 C -0.076 4.076 23 C -0.215 4.215 24 C -0.232 4.232 25 C -0.119 4.119 26 O -0.073 6.073 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.188 0.812 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.102 0.898 41 H 0.167 0.833 42 H 0.161 0.839 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.264 7.168 16.333 17.838 hybrid contribution 0.629 -1.550 -0.686 1.808 sum 0.893 5.618 15.646 16.648 Atomic orbital electron populations 1.20157 0.87031 1.02608 1.03262 1.22101 0.96679 0.90211 0.98323 1.77211 0.86357 1.22713 1.26519 1.48181 1.05410 1.04618 1.58141 1.21758 0.83901 0.95022 1.02780 1.22200 0.99098 0.84820 1.02020 1.19359 0.91853 0.94950 1.15547 1.20040 1.02630 0.92158 0.95871 1.20432 0.77581 0.81792 0.90563 1.90680 1.50852 1.52215 1.46318 1.48326 1.65159 1.10913 1.08575 1.19273 0.96420 0.96039 0.75362 1.21394 0.96878 1.40005 0.98281 0.92452 1.24921 0.96311 0.95969 0.96789 1.69923 1.26755 1.46639 1.09939 0.86587 0.83476 0.79339 0.78168 1.20220 1.21227 1.20279 1.19876 0.86758 0.96873 0.89868 1.23336 0.98593 0.93821 0.91845 1.21697 0.91901 1.04488 1.03416 1.21817 1.00240 1.01241 0.99944 1.23919 0.81937 1.02297 1.03728 1.83998 1.23925 1.52632 1.46704 0.90305 0.90631 0.91306 0.91179 0.89682 0.89598 0.81240 0.89153 0.88536 0.94983 0.93908 0.92686 0.86762 0.89794 0.83327 0.83875 0.78599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.26 36.00 0.37 -0.65 16 2 C 0.09 1.57 7.22 -82.40 -0.59 0.98 16 3 N -0.30 -5.22 12.57 33.67 0.42 -4.79 16 4 N -0.38 -5.58 4.01 -68.16 -0.27 -5.86 16 5 C 0.11 1.00 11.47 59.85 0.69 1.69 16 6 C 0.06 0.95 11.40 -17.22 -0.20 0.75 16 7 C -0.21 -3.39 4.59 -105.05 -0.48 -3.87 16 8 C -0.07 -1.03 4.51 -29.04 -0.13 -1.16 16 9 C 0.51 10.63 7.66 -10.99 -0.08 10.55 16 10 O -0.53 -13.51 15.61 5.55 0.09 -13.42 16 11 N -0.60 -12.35 2.44 -176.43 -0.43 -12.78 16 12 C 0.25 6.37 5.16 -5.19 -0.03 6.34 16 13 C -0.53 -14.57 9.39 -34.44 -0.32 -14.90 16 14 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 17 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 C 0.19 3.02 5.74 -5.19 -0.03 2.99 16 22 C -0.02 -0.38 6.85 -35.62 -0.24 -0.62 16 23 C -0.19 -2.98 10.81 -39.70 -0.43 -3.41 16 24 C -0.21 -2.77 10.91 -39.70 -0.43 -3.20 16 25 C -0.05 -0.61 12.09 29.42 0.36 -0.25 16 26 O -0.18 -2.48 9.55 5.69 0.05 -2.43 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 0.97 7.37 -51.93 -0.38 0.59 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.17 1.97 8.06 -52.49 -0.42 1.54 16 34 H 0.09 1.18 7.40 -51.93 -0.38 0.79 16 35 H 0.10 1.39 6.20 -51.93 -0.32 1.07 16 36 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 37 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.11 1.77 8.07 -51.93 -0.42 1.35 16 40 H 0.08 1.08 6.44 -51.93 -0.33 0.74 16 41 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 42 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.20 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -36.68 371.89 -6.48 -43.16 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.00 Total: 2.70 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -1.66 Total: -3.10 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.46 Total: -49.06 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.14 Total: -15.85 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.68 -6.48 -43.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361695461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.352 kcal (2) G-P(sol) polarization free energy of solvation -36.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds